genome.fa.s148.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold148
Parameters: 2 7 7 80 10 50 1000
Length:  1464219

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1072 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1313514--1313664	75	2.0	75	96	1	275	43	2	23	30	1.67
1313673--1313708	16	2.3	15	90	4	54	80	0	0	19	0.71
1313678--1313708	13	2.5	12	90	10	53	80	0	0	19	0.71
1318452--1318558	10	10.4	10	69	16	67	25	28	9	37	1.87
1318470--1318526	22	2.6	22	100	0	114	26	24	12	36	1.91
1318452--1318558	22	5.2	20	86	5	108	25	28	9	37	1.87
1318560--1318602	22	2.0	22	100	0	86	27	23	13	34	1.93
1318644--1318698	20	2.8	20	100	0	110	34	10	14	40	1.81
1320679--1320722	21	2.1	21	91	0	70	61	0	18	20	1.35
1323235--1323297	32	1.9	33	87	3	92	25	15	19	39	1.91
1325525--1325563	13	3.0	13	100	0	78	38	15	15	30	1.88
1327645--1327675	15	2.1	15	93	0	53	12	22	16	48	1.80
1329475--1329523	21	2.3	23	82	13	68	22	12	6	59	1.55
1329479--1329523	22	2.1	21	88	8	65	22	13	6	57	1.59
1330913--1330938	13	2.0	13	100	0	52	30	15	15	38	1.88
1330893--1330956	32	2.0	33	90	3	103	28	14	18	39	1.90
1330893--1330963	19	4.0	18	72	25	62	26	12	21	39	1.89
1331979--1332019	21	2.0	21	90	0	64	36	4	29	29	1.78
1332909--1332951	22	2.0	22	95	0	77	27	20	13	37	1.91
1334223--1334248	13	2.0	13	100	0	52	30	15	15	38	1.88
1334203--1334267	33	2.0	33	87	6	96	27	13	16	41	1.87
1335057--1335081	5	5.0	5	100	0	50	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1338647--1338721	20	3.8	19	78	7	87	41	12	13	33	1.81
1338644--1338721	40	2.0	39	89	2	120	41	12	12	33	1.82
1339313--1340630	28	46.2	28	83	8	704	25	17	29	27	1.97
1339392--1339912	32	17.4	31	84	4	392	22	19	28	29	1.98
1339511--1340053	64	9.1	63	86	6	472	21	19	29	29	1.97
1339576--1340053	96	5.3	94	84	7	455	20	19	29	30	1.97
1339910--1340601	55	12.6	53	86	5	704	28	15	31	25	1.95
1340054--1340601	82	6.7	81	86	5	717	29	14	31	24	1.95
1339926--1340626	248	2.8	247	85	5	930	27	15	31	25	1.95
1341940--1341981	16	2.6	16	81	7	50	7	14	9	69	1.37
1349016--1349090	20	3.8	19	78	7	87	41	12	13	33	1.81
1349013--1349090	40	2.0	39	89	2	120	41	12	12	33	1.82
1349812--1349850	9	4.1	9	83	9	51	0	17	0	82	0.68
1349811--1349869	10	5.4	11	84	13	68	0	20	0	79	0.73
1349801--1349844	20	2.2	20	87	0	61	4	15	0	79	0.89
1349811--1349869	24	2.7	22	82	12	68	0	20	0	79	0.73
1349815--1349869	12	4.6	12	78	13	60	0	21	0	78	0.76
1353463--1353527	27	2.4	27	84	0	85	26	33	15	24	1.95
1354317--1354371	28	2.0	28	88	0	83	21	23	18	36	1.95
1354326--1354379	28	1.9	28	88	0	81	24	24	18	33	1.97
1360924--1360960	18	2.1	18	94	0	65	67	2	0	29	1.04
1362859--1362888	15	2.0	15	100	0	60	73	6	0	20	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1365748--1365782	18	1.9	18	94	0	61	54	11	8	25	1.64
1366598--1366630	17	2.0	17	88	5	50	57	6	3	33	1.38
1369866--1370192	78	4.2	79	83	7	380	28	26	13	31	1.94
1369866--1370192	156	2.1	158	86	5	450	28	26	13	31	1.94
1372381--1372537	20	7.8	20	70	25	100	27	16	14	41	1.87
1372468--1372499	13	2.5	13	94	0	55	28	21	15	34	1.94
1372448--1372517	33	2.1	33	94	0	122	27	18	14	40	1.89
1374810--1374939	51	2.5	51	80	2	136	29	25	10	34	1.90
1375093--1375259	51	3.3	51	78	5	187	31	23	10	34	1.88
1374967--1375157	106	1.8	106	86	2	276	26	22	15	35	1.94
1375199--1375347	79	1.9	79	83	2	192	28	24	11	36	1.90
1379205--1379245	16	2.6	16	96	0	73	82	0	4	12	0.81
1379202--1379246	14	3.1	14	84	12	63	75	0	6	17	1.01
1379320--1379387	19	3.9	19	74	21	76	36	11	13	38	1.81
1379322--1379384	32	2.0	32	93	0	108	36	12	14	36	1.84
1379427--1379452	13	2.0	13	100	0	52	30	15	15	38	1.88
1379407--1379473	33	2.0	33	88	0	98	25	14	16	43	1.86
1381918--1381990	27	2.7	27	87	6	94	23	34	21	20	1.97
1381973--1382143	51	3.3	51	79	4	198	29	26	11	32	1.92
1382126--1382207	28	2.9	28	82	7	96	24	31	17	26	1.97
1390216--1390271	10	5.7	10	91	8	89	80	19	0	0	0.71
1390206--1390281	10	7.4	10	84	11	82	82	15	1	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1391696--1391868	32	5.5	32	81	9	178	28	30	15	24	1.96
1391821--1391915	47	2.0	47	89	4	147	28	33	13	24	1.93
1391868--1392324	32	14.3	32	80	4	483	30	30	16	22	1.96
1391792--1391947	79	2.0	76	87	6	224	28	33	15	23	1.95
1392388--1392676	52	5.6	50	75	16	245	26	24	16	33	1.96
1392396--1392578	52	3.6	51	87	2	253	24	25	17	32	1.97
1392531--1392616	43	2.0	43	88	4	129	30	25	15	29	1.96
1392574--1392690	61	1.9	62	85	5	166	26	22	11	39	1.89
1407128--1407160	11	2.8	12	86	9	50	66	0	0	33	0.92
1409531--1409567	19	1.9	19	88	0	56	45	21	18	13	1.84
1411125--1411209	42	2.0	42	82	11	102	40	1	0	58	1.05
1411205--1411279	18	4.2	18	70	14	66	33	0	0	66	0.92
1411201--1411269	23	3.2	21	72	21	63	30	0	0	69	0.89
1411145--1411277	45	3.0	45	76	16	116	35	0	0	63	1.00
1413913--1413972	30	2.0	30	83	6	77	51	0	0	48	1.00
1414513--1414565	19	2.9	18	83	13	56	64	0	3	32	1.12
1416592--1416622	16	1.9	16	93	0	53	48	25	3	22	1.66
1417974--1418033	21	2.9	22	69	16	56	40	0	0	60	0.97
1418037--1418091	23	2.5	21	82	11	58	30	5	0	63	1.17
1421150--1421266	34	3.4	34	90	0	189	39	37	1	21	1.64
1425995--1426111	34	3.4	34	91	0	189	41	35	0	23	1.60
1427266--1427297	16	2.0	16	93	0	55	65	6	12	15	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1430817--1431025	50	4.2	50	90	2	330	28	20	22	28	1.99
1435407--1435565	50	3.2	49	90	3	255	28	18	22	29	1.98
1438514--1438554	16	2.6	16	92	0	64	48	24	7	19	1.74
1440775--1440966	78	2.5	77	79	8	192	35	13	22	27	1.92
1440796--1440966	78	2.2	78	81	8	204	34	14	23	27	1.94
1440952--1441255	79	3.9	78	82	4	326	33	13	24	28	1.93
1443910--1443993	34	2.5	34	86	0	123	40	13	28	17	1.87
1443979--1444084	43	2.5	42	80	10	119	46	10	24	18	1.81
1443996--1444084	43	2.1	43	87	4	126	43	12	22	21	1.85
1444016--1444112	43	2.2	43	85	1	122	38	14	26	20	1.91
1444097--1444484	183	2.1	183	83	4	471	29	18	25	27	1.98
1444095--1444484	61	6.4	61	80	5	423	29	18	25	26	1.98
1452129--1452173	22	2.0	23	82	4	56	48	15	17	17	1.81
1452528--1452568	11	3.5	11	81	12	55	78	0	19	2	0.87
1452559--1452594	17	2.1	17	100	0	72	77	0	11	11	0.99
1452857--1452885	10	3.0	10	95	5	51	0	0	6	93	0.36
1460362--1460419	30	1.9	31	89	3	91	24	27	15	32	1.95
1460387--1460643	54	5.0	46	88	6	176	22	34	13	29	1.92
1460439--1461886	27	53.0	27	93	1	2410	22	34	14	28	1.93
1460439--1461886	191	7.6	189	93	1	2410	22	34	14	28	1.93
1460439--1461901	218	6.7	217	93	2	2407	22	34	14	28	1.93
1461869--1463049	32	37.8	32	90	3	1758	30	33	18	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1461869--1463049	127	9.5	127	90	3	1748	30	33	18	17	1.94
1463873--1463901	1	29.0	1	100	0	58	100	0	0	0	0.00

Tables:   1   2   3   4   5   6   7   8   9

The End!