genome.fa.s148.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold148
Parameters: 2 7 7 80 10 50 1000
Length:  1464219

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 1072 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318542--318566	13	1.9	13	100	0	50	36	16	16	32	1.90
320114--320138	13	1.9	13	100	0	50	32	16	16	36	1.90
320094--320161	33	2.1	33	89	8	104	36	16	14	32	1.89
320597--320663	37	1.9	35	88	11	102	32	11	25	29	1.92
323967--324990	28	34.4	29	81	7	799	22	18	29	30	1.97
324024--325280	28	43.1	28	80	7	727	23	17	29	28	1.97
323967--324990	57	17.2	57	81	7	743	22	18	29	30	1.97
324570--324969	64	6.5	63	80	7	389	20	18	27	33	1.96
323966--324998	216	5.0	206	82	8	983	22	18	29	30	1.97
325001--325678	27	24.7	27	83	4	763	30	13	30	25	1.94
325001--325678	165	4.1	165	84	3	857	30	13	30	25	1.94
324959--325679	192	3.7	191	84	4	880	30	13	30	25	1.94
334082--334158	20	3.8	20	78	13	95	37	10	18	33	1.85
335319--336133	42	19.4	41	72	11	316	18	26	18	36	1.93
335319--335628	126	2.5	125	80	4	390	16	26	20	35	1.94
335319--336176	84	10.2	84	75	5	495	18	26	18	36	1.93
335319--336252	127	7.4	126	75	7	542	18	26	17	37	1.93
337518--337576	30	1.9	30	82	3	73	72	15	6	5	1.23
337690--337837	40	3.7	40	73	8	147	37	33	14	14	1.87
337691--337854	81	2.0	80	86	1	229	37	32	16	14	1.88
338063--338098	13	2.8	13	95	0	63	27	30	22	19	1.98
338239--338315	22	3.5	22	96	0	136	19	38	22	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338137--338328	71	2.6	73	80	6	208	23	38	18	19	1.94
338178--338348	93	1.8	94	87	1	254	22	38	19	19	1.93
338178--338369	94	2.1	93	85	3	251	22	39	18	19	1.92
338309--338378	19	3.5	19	71	17	61	25	42	14	17	1.86
343466--343498	16	2.1	16	94	0	57	54	18	6	21	1.64
345344--345651	28	11.0	28	79	4	300	28	30	16	24	1.97
346573--346631	31	1.9	31	89	0	91	25	15	11	47	1.79
347012--347087	40	1.9	40	94	0	134	28	34	10	26	1.90
354606--354649	15	2.9	15	82	0	61	43	34	0	22	1.54
359617--359642	13	2.0	13	100	0	52	30	15	15	38	1.88
359597--359660	33	2.0	32	87	9	94	28	14	20	37	1.91
359702--359754	20	2.6	21	82	8	65	28	16	16	37	1.91
360360--360391	16	2.0	16	93	0	55	40	18	6	34	1.76
362255--362279	13	1.9	13	100	0	50	36	16	16	32	1.90
368537--368589	20	2.6	21	82	8	65	28	16	16	37	1.91
368577--368601	13	1.9	13	100	0	50	36	16	16	32	1.90
457056--457120	13	5.1	12	72	18	51	33	16	16	32	1.92
457069--457127	25	2.3	27	82	14	79	30	20	16	32	1.95
457137--457544	28	14.6	28	86	1	505	28	30	16	24	1.97
458535--458582	20	2.4	20	96	0	87	33	6	8	52	1.57
460232--460298	37	1.9	35	88	11	102	29	25	11	32	1.92
460765--460793	13	2.2	13	100	0	58	34	24	13	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460826--460903	24	3.3	24	75	7	79	39	10	25	24	1.87
460937--460961	13	1.9	13	100	0	50	36	16	16	32	1.90
469618--469741	52	2.4	51	93	4	205	29	17	18	34	1.94
469750--469774	13	1.9	13	100	0	50	36	16	16	32	1.90
469815--469881	33	2.0	33	88	0	98	40	13	11	34	1.81
469837--469861	13	1.9	13	100	0	50	32	16	16	36	1.90
472700--472736	17	2.1	18	90	10	58	35	13	16	35	1.88
472718--472743	13	2.0	13	100	0	52	38	15	15	30	1.88
472700--472763	33	2.0	33	90	3	103	40	15	14	29	1.86
475552--475675	52	2.4	51	93	4	205	29	17	18	34	1.94
475552--475695	52	2.8	50	84	13	177	30	17	18	33	1.94
475684--475708	13	1.9	13	100	0	50	36	16	16	32	1.90
475749--475815	33	2.0	33	88	0	98	40	13	11	34	1.81
475771--475795	13	1.9	13	100	0	50	32	16	16	36	1.90
476605--476731	67	1.9	68	83	1	166	37	12	25	23	1.90
476734--477205	92	5.0	93	88	5	642	31	17	26	24	1.97
476744--477197	49	9.5	49	86	6	628	31	18	25	24	1.97
477210--477313	32	3.2	33	89	4	167	19	18	36	25	1.94
477316--477657	34	10.6	33	74	15	263	32	13	33	19	1.91
477385--477635	61	4.1	60	75	15	226	31	13	35	20	1.91
477349--477636	97	3.1	95	81	11	335	32	13	34	20	1.91
477578--477695	30	3.8	31	84	4	121	31	16	28	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485908--486031	52	2.4	51	93	4	205	29	17	18	34	1.94
486040--486064	13	1.9	13	100	0	50	36	16	16	32	1.90
486105--486171	33	2.0	33	88	0	98	40	13	11	34	1.81
486127--486151	13	1.9	13	100	0	50	32	16	16	36	1.90
488990--489026	17	2.1	18	90	10	58	35	13	16	35	1.88
489008--489033	13	2.0	13	100	0	52	38	15	15	30	1.88
488990--489053	33	2.0	33	90	3	103	40	15	14	29	1.86
498456--498480	1	25.0	1	100	0	50	0	0	100	0	0.00
498643--498684	20	2.1	20	86	0	57	26	2	47	23	1.64
498741--498780	20	2.1	19	85	4	53	57	0	0	42	0.98
498943--499053	46	2.4	46	90	0	168	45	3	2	47	1.34
499086--499159	31	2.4	31	77	11	80	50	1	0	48	1.09
499099--499165	15	4.3	15	77	7	62	49	1	0	49	1.10
501297--501321	2	12.5	2	100	0	50	48	0	0	52	1.00
501240--501358	62	1.9	62	100	0	238	36	5	16	41	1.71
505997--506044	24	2.0	23	84	4	60	45	6	0	47	1.27
506102--506160	15	3.9	15	78	20	52	61	0	0	38	0.96
506108--506160	8	7.0	8	75	25	53	62	0	0	37	0.96
506111--506160	15	3.4	14	79	17	57	64	0	0	36	0.94
506099--506182	29	2.8	29	80	14	89	55	2	0	41	1.12
506720--506774	15	3.9	14	79	9	58	54	1	3	40	1.28
506753--506797	16	2.6	18	80	20	60	62	4	2	31	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507222--507267	11	4.3	11	76	13	51	41	0	0	58	0.98
507212--507289	22	3.4	22	69	19	61	41	0	0	58	0.98
507193--507276	38	2.3	36	80	11	98	38	1	0	60	1.04
507198--507292	27	3.5	26	76	17	79	40	0	0	60	0.97
507458--507484	6	4.5	6	100	0	54	0	14	14	70	1.17
507551--507582	16	2.1	16	88	11	50	50	0	0	50	1.00
507546--507592	18	2.6	19	80	6	53	48	0	0	51	1.00
508652--508715	31	2.1	30	83	13	78	40	4	0	54	1.21
508701--508742	17	2.3	18	84	15	52	61	0	0	38	0.96
511401--511437	19	1.9	19	94	0	65	75	5	13	5	1.15
512212--512243	9	3.6	9	91	0	55	43	0	43	12	1.42
512215--512285	18	3.6	18	72	20	61	43	0	40	15	1.47
512199--512300	42	2.4	42	88	0	150	41	0	44	13	1.51
518863--518949	31	2.8	31	79	5	88	57	2	3	36	1.28
521632--521665	14	2.6	13	86	13	52	64	0	0	35	0.94
522152--522190	2	19.5	2	100	0	78	48	0	0	51	1.00
523318--523348	15	2.1	15	93	0	53	41	3	12	41	1.59
523474--523525	16	3.1	16	86	10	77	53	0	0	46	1.00
523474--523520	6	8.2	6	76	9	53	55	0	0	44	0.99
523474--523518	18	2.6	17	93	6	74	57	0	0	42	0.98
523810--523843	3	11.3	3	100	0	68	67	0	0	32	0.91
524806--524880	23	3.1	23	74	24	66	57	0	0	42	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524834--524899	33	2.0	34	81	3	80	59	0	1	39	1.07
528315--528346	14	2.1	16	88	11	50	46	0	6	46	1.27
528385--528426	15	2.7	16	78	14	52	61	0	2	35	1.09
528475--528512	17	2.2	17	100	0	76	44	0	15	39	1.47
531389--531428	2	20.0	2	89	0	62	0	45	5	50	1.23
531598--531635	2	19.0	2	88	0	58	55	0	0	44	0.99
539201--539271	25	3.0	23	73	16	72	53	1	4	40	1.29
541351--541388	10	3.9	10	83	16	53	26	0	0	73	0.83
542264--542329	30	2.2	32	81	13	77	10	22	0	66	1.22
542289--542329	15	2.6	16	88	3	66	12	19	0	68	1.21

Tables:   1   2   3   4   5   6   7   8   9