genome.fa.s168.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold168
Parameters: 2 7 7 80 10 50 1000
Length:  2098754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  6  of  16  ( 1854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607755--607795	3	13.7	3	100	0	82	31	0	0	68	0.90
608288--608345	19	3.2	18	79	11	57	53	3	0	43	1.17
608323--608357	16	2.2	16	90	5	54	45	2	0	51	1.16
608483--608512	9	3.3	9	100	0	60	36	0	0	63	0.95
608686--608835	34	4.6	33	74	21	115	58	0	2	39	1.09
608754--608843	20	4.9	19	70	20	75	56	0	1	42	1.06
608738--608787	15	3.3	15	76	17	59	58	0	0	42	0.98
608684--608834	29	5.1	29	75	18	109	58	0	1	39	1.10
609147--609221	21	3.7	20	75	18	57	33	0	2	64	1.08
609178--609252	11	6.9	11	78	11	66	32	0	2	65	1.07
609232--609291	28	2.1	28	82	11	70	30	1	5	63	1.25
609193--609275	34	2.5	33	78	5	85	31	0	3	65	1.10
609673--609721	24	2.0	24	84	11	64	61	2	0	36	1.08
610147--610179	16	2.0	17	94	5	59	42	0	0	57	0.98
610351--610387	3	12.3	3	100	0	74	32	0	0	67	0.91
610796--610845	22	2.3	24	74	22	56	48	0	0	52	1.00
610857--610895	19	2.2	17	86	9	51	41	0	0	58	0.98
611068--611137	26	2.6	27	80	13	83	50	0	2	47	1.16
611113--611153	19	2.2	19	91	4	66	46	0	2	51	1.14
611079--611148	28	2.5	27	76	13	79	52	0	1	45	1.09
611249--611326	41	1.9	41	84	5	104	53	0	1	44	1.08
611327--611370	14	2.8	16	86	10	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611436--611497	31	2.1	28	82	8	70	46	0	3	50	1.17
611480--611513	17	2.0	17	94	0	59	67	0	0	32	0.91
611520--611585	31	2.1	32	86	13	93	51	0	0	48	1.00
611547--611619	23	3.3	23	77	11	80	56	1	0	42	1.08
611528--611587	14	4.0	14	74	19	50	50	0	0	50	1.00
611520--611618	43	2.2	46	84	7	125	54	1	0	44	1.06
611470--611653	93	2.0	90	80	11	205	53	1	1	43	1.17
611915--611949	18	2.0	18	88	5	54	25	0	0	74	0.82
612261--612337	23	3.2	23	75	13	75	33	2	1	62	1.17
612280--612353	23	3.1	23	75	9	60	33	4	1	60	1.24
612261--612359	49	2.0	49	84	7	130	33	4	1	61	1.21
612270--612387	49	2.4	50	80	7	116	33	5	1	60	1.29
612391--612455	23	3.0	22	73	19	64	46	0	1	52	1.10
612975--613022	20	2.3	20	85	7	60	41	0	0	58	0.98
613021--613062	21	2.0	21	86	9	59	42	0	0	57	0.99
613577--613640	29	2.2	30	91	2	103	46	0	1	51	1.10
613598--613649	21	2.3	23	80	12	63	44	1	0	53	1.11
613608--613650	21	2.0	21	90	4	68	41	2	0	55	1.12
614651--614754	28	3.8	26	74	18	86	58	2	1	36	1.24
614715--614823	17	6.3	17	71	23	77	61	0	0	38	0.96
614715--614823	36	3.1	35	81	15	129	61	0	0	38	0.96
614755--614817	11	5.5	11	73	19	58	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
614719--614838	28	4.1	28	74	18	86	57	0	0	41	1.04
614775--614844	31	2.2	33	87	12	101	51	1	0	47	1.09
614836--614875	20	2.0	20	85	0	53	55	2	0	42	1.13
615087--615121	18	1.9	19	88	11	56	48	0	0	51	1.00
619703--619736	17	2.0	17	88	11	52	55	0	0	44	0.99
620845--620946	36	2.9	36	69	15	86	52	0	0	47	1.00
620876--620956	29	2.8	27	78	17	76	54	1	0	44	1.08
621337--621378	20	2.0	22	90	9	70	64	0	35	0	0.94
622560--622590	10	3.1	10	95	0	53	45	0	6	48	1.28
623628--623672	21	2.1	21	91	0	72	31	8	13	46	1.74
627870--627916	15	3.1	15	82	14	60	55	0	0	44	0.99
628259--628303	23	2.0	22	87	12	65	48	0	0	51	1.00
628493--628536	13	3.3	13	80	3	52	36	2	0	61	1.09
628935--628960	2	13.0	2	100	0	52	50	0	0	50	1.00
629645--629686	21	2.0	21	86	9	59	61	4	2	30	1.29
629645--629687	22	2.0	21	82	13	52	62	4	2	30	1.28
630327--630366	16	2.4	16	87	4	53	55	0	0	45	0.99
631111--631161	12	4.5	11	76	13	50	35	0	1	62	1.06
631121--631183	21	2.9	21	81	15	58	34	3	3	58	1.30
631853--631941	11	8.1	11	72	16	60	62	1	0	35	1.02
631870--631902	5	6.6	5	96	0	57	78	0	0	21	0.75
631924--631983	31	1.9	31	86	6	86	53	1	3	41	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
633905--633979	25	3.0	25	75	11	82	41	0	0	58	0.98
634053--634101	19	2.5	20	83	3	64	44	0	0	55	0.99
634077--634107	12	2.6	12	94	0	53	51	0	0	48	1.00
634798--634876	22	3.3	22	78	16	86	55	1	3	39	1.26
635064--635118	16	3.1	18	77	17	53	52	0	0	47	1.00
636508--636564	14	3.8	14	75	22	53	7	10	0	82	0.84
636520--636582	26	2.4	27	79	12	69	3	17	0	79	0.86
636509--636582	20	3.8	20	73	10	64	5	14	0	79	0.90
636520--636593	35	2.2	32	83	7	85	4	17	0	78	0.90
636507--636595	38	2.3	38	77	11	90	6	14	0	78	0.94
636779--636813	4	8.8	4	100	0	70	25	0	22	51	1.48
637683--637722	20	2.0	20	85	0	53	15	12	0	72	1.12
640592--640642	7	6.9	7	78	12	57	52	0	0	47	1.00
641075--641142	29	2.3	30	82	7	86	42	1	2	52	1.25
642617--642677	30	2.0	31	84	9	81	39	3	1	55	1.26
642858--642946	30	3.0	29	69	18	76	55	1	1	42	1.14
642922--642957	13	2.6	14	91	8	56	47	0	0	52	1.00
643078--643119	3	14.0	3	100	0	84	33	0	0	66	0.92
643418--643477	25	2.3	26	91	5	95	33	1	1	63	1.14
643646--643683	17	2.4	16	83	12	51	39	0	0	60	0.97
644023--644074	23	2.2	24	89	3	79	46	0	0	53	1.00
644330--644363	16	2.1	16	88	0	50	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644643--644677	14	2.5	14	86	13	54	40	0	0	60	0.97
644663--644727	33	1.9	33	81	9	78	49	0	0	50	1.00
646008--646033	2	13.0	2	100	0	52	50	0	0	50	1.00
647166--647236	27	2.6	27	77	18	76	45	0	0	54	0.99
648605--648630	2	13.0	2	100	0	52	50	0	0	50	1.00
649259--649309	2	25.5	2	91	0	84	49	3	0	47	1.20
653309--653383	18	4.1	18	76	13	64	61	0	4	34	1.15
653362--653441	28	2.9	28	92	5	128	48	0	8	42	1.34
653657--653699	22	2.0	22	90	9	70	41	0	0	58	0.98
654222--654256	18	1.9	18	94	0	61	54	0	14	31	1.40
654380--654425	23	2.0	22	83	4	56	52	4	0	43	1.21
655413--655468	27	2.1	27	83	3	69	46	0	0	53	1.00
655444--655485	16	2.4	18	84	11	52	54	0	0	45	0.99
655441--655496	19	2.9	19	78	5	60	51	0	0	48	1.00
655739--655805	26	2.6	25	77	15	66	49	0	1	49	1.10
655753--655805	26	2.0	27	85	10	74	47	0	1	50	1.12
661746--661792	2	23.5	2	95	0	85	51	0	2	46	1.13
665921--665947	12	2.2	12	100	0	54	37	33	11	18	1.86
668537--668581	17	2.8	15	78	15	54	40	0	0	60	0.97
669401--669431	14	2.3	14	94	5	55	54	0	3	41	1.16
669499--669549	14	3.6	14	81	5	57	35	0	1	62	1.06
669499--669562	29	2.1	31	88	5	96	39	0	1	59	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669499--669562	8	8.5	8	70	25	50	39	0	1	59	1.07
669499--669562	15	4.3	15	74	9	60	39	0	1	59	1.07
669785--669833	14	3.4	14	83	5	71	65	0	0	34	0.93
669773--669861	29	3.0	29	85	8	101	57	2	0	40	1.11
669785--669829	21	2.1	21	84	8	56	66	0	0	33	0.92
669871--669939	15	4.9	14	76	13	70	69	0	0	30	0.89
670629--670671	22	2.0	22	90	0	68	55	4	0	39	1.20
671176--671200	1	25.0	1	100	0	50	100	0	0	0	0.00
672609--672659	23	2.2	24	79	10	61	39	0	0	60	0.97
672916--672971	19	2.9	19	76	15	62	41	1	0	57	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16