genome.fa.s168.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold168
Parameters: 2 7 7 80 10 50 1000
Length:  2098754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  7  of  16  ( 1854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
673702--673733	15	2.0	17	88	11	50	53	0	6	40	1.26
674145--674232	32	2.8	32	72	10	81	53	5	6	34	1.51
674608--674640	15	2.1	16	88	5	50	66	0	0	33	0.92
679588--679649	1	62.0	1	83	0	70	0	4	4	90	0.56
687875--687986	7	16.9	7	66	25	57	46	0	0	52	1.06
687879--687967	20	4.8	20	70	24	61	49	0	0	50	1.00
687863--687955	37	2.6	35	80	9	100	46	0	0	53	1.00
687899--687980	33	2.5	33	82	11	96	47	1	0	51	1.08
687961--688018	18	3.4	18	72	20	61	34	3	0	62	1.12
689031--689060	13	2.2	14	94	5	53	6	10	0	83	0.81
690009--690083	23	3.3	23	67	20	57	41	0	0	58	0.98
690096--690137	22	1.9	22	90	9	68	73	0	0	26	0.83
690605--690651	23	2.1	22	92	7	78	40	0	4	55	1.19
690670--690705	12	3.0	13	84	15	51	30	0	5	63	1.17
690777--690877	7	14.1	7	70	17	57	54	0	0	45	0.99
690770--690853	21	3.8	24	74	16	83	53	0	0	46	1.00
690766--690894	41	3.2	40	72	15	113	51	0	0	48	1.00
690766--690895	21	6.4	20	70	20	76	51	0	0	48	1.00
691914--691952	21	1.9	21	94	5	71	56	0	2	41	1.13
692039--692075	19	2.0	18	89	5	56	54	0	0	45	1.00
692099--692180	22	3.7	22	67	19	55	43	0	0	56	0.99
692119--692252	11	13.0	11	69	17	58	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
692144--692226	31	2.9	26	72	27	71	48	0	0	51	1.00
692162--692231	33	2.2	33	84	5	90	47	0	0	52	1.00
692226--692267	16	2.6	17	85	11	61	38	0	0	61	0.96
692190--692271	27	3.0	27	70	13	69	40	0	0	59	0.97
693347--693402	25	2.3	25	81	3	60	32	0	3	64	1.11
693413--693446	12	2.6	14	86	13	54	50	0	2	47	1.16
693900--693966	24	2.8	24	73	13	66	58	0	4	37	1.19
693900--694081	15	12.1	15	65	24	55	54	0	1	43	1.09
693965--694050	32	2.6	33	78	17	97	51	0	0	48	1.00
694000--694095	27	3.5	27	80	10	97	56	0	0	43	0.99
694610--694697	42	2.1	41	81	8	97	43	0	1	55	1.07
694656--694743	27	3.3	27	74	13	76	39	1	0	59	1.05
694636--694752	8	13.1	9	66	21	52	41	0	0	58	1.04
694656--694766	26	4.2	26	69	16	77	41	0	0	57	1.05
694644--694754	16	6.5	17	68	20	63	40	0	0	58	1.04
694741--694799	13	5.0	12	72	17	52	47	0	1	50	1.11
698551--698595	24	2.0	22	90	4	63	20	4	28	46	1.69
703034--703070	19	1.9	19	94	0	65	13	13	35	37	1.84
703148--703192	24	2.0	22	90	4	63	20	4	28	46	1.69
704262--704322	14	4.4	14	76	15	56	59	1	1	37	1.17
704356--704380	13	1.9	13	100	0	50	44	0	0	56	0.99
704356--704422	20	3.5	19	74	22	52	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
707079--707143	13	5.3	13	72	22	52	47	0	0	52	1.00
707760--707793	3	11.3	3	100	0	68	32	0	0	67	0.91
708907--708966	10	5.8	10	78	7	66	73	1	0	25	0.93
708894--708966	21	3.4	21	77	5	76	72	1	0	26	0.93
708889--708962	37	2.0	37	86	5	105	68	1	0	29	0.97
708901--708966	11	6.1	11	77	8	55	74	1	0	24	0.91
714563--714625	34	1.9	33	84	9	85	44	3	1	50	1.27
715382--715435	26	2.1	26	100	0	108	50	3	14	31	1.61
715849--715879	2	15.5	2	100	0	62	51	0	0	48	1.00
719795--719853	22	2.8	22	82	10	70	50	0	0	49	1.00
721478--721517	19	2.1	19	85	4	53	37	5	17	40	1.72
726636--726700	17	3.8	17	73	15	62	53	1	0	44	1.09
726672--726708	12	3.0	12	92	4	56	56	0	0	43	0.99
728765--728798	16	2.1	16	100	0	68	20	47	5	26	1.73
730081--730130	17	2.9	17	80	14	59	40	0	0	60	0.97
730150--730209	25	2.5	25	83	5	70	43	0	3	53	1.17
730939--731079	36	3.9	36	67	20	89	56	0	0	43	1.04
730941--731095	69	2.2	70	77	16	160	56	0	0	43	1.04
731040--731082	19	2.4	17	88	7	59	58	0	0	41	0.98
731044--731091	19	2.5	19	75	18	55	58	0	0	41	0.98
731299--731418	9	13.9	9	74	15	76	40	0	0	60	0.97
731299--731410	17	6.5	17	74	17	81	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
731372--731418	16	2.9	16	90	3	67	38	0	0	61	0.96
731513--731578	15	4.5	15	75	14	66	42	3	0	54	1.15
736208--736236	2	14.5	2	100	0	58	48	51	0	0	1.00
737715--737775	12	5.6	11	79	16	65	65	0	0	34	0.93
737715--737749	10	3.4	10	92	4	52	71	0	0	28	0.86
737715--737777	21	3.0	21	79	11	83	66	0	0	33	0.92
737715--737777	33	1.9	33	84	12	85	66	0	0	33	0.92
738132--738175	17	2.6	17	85	0	52	59	2	0	38	1.10
738240--738297	28	2.0	29	90	3	91	56	0	0	43	0.99
738245--738308	15	4.4	15	81	13	80	56	0	0	43	0.99
740303--740330	2	14.0	2	100	0	56	50	0	0	50	1.00
740315--740366	24	2.1	26	82	13	65	55	0	1	42	1.10
740309--740399	31	2.9	31	80	8	76	56	0	2	41	1.12
743186--743231	12	3.9	11	83	11	56	65	0	0	34	0.93
743429--743475	25	1.9	25	87	12	71	57	0	0	42	0.98
743700--743737	16	2.5	15	87	8	51	31	0	0	68	0.90
743795--743928	11	12.1	11	66	26	61	50	0	0	48	1.06
743782--743928	35	4.2	36	70	21	107	49	0	0	49	1.05
743818--743881	27	2.5	25	85	14	78	48	0	0	51	1.00
744204--744261	16	3.4	17	81	13	66	50	1	1	46	1.22
745352--745399	16	3.0	16	87	0	69	35	6	0	58	1.23
746124--746173	27	2.0	26	85	14	70	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
746226--746264	20	2.0	20	84	0	51	30	2	10	56	1.46
746893--746935	22	2.0	23	86	9	63	41	16	2	39	1.61
748184--748269	21	3.8	23	73	11	70	40	0	0	59	0.97
748185--748273	18	5.4	18	69	24	63	40	0	0	59	0.97
748187--748278	15	6.1	15	67	27	52	41	0	0	58	0.98
748287--748333	11	4.6	11	75	20	57	38	2	0	59	1.09
748289--748336	18	2.7	17	84	9	60	39	2	0	58	1.10
748174--748360	29	6.8	26	67	20	98	40	1	0	58	1.05
749840--749924	30	2.6	31	78	10	91	60	0	0	40	0.97
749840--749917	15	4.9	17	68	16	60	57	0	0	42	0.98
749793--749932	57	2.3	58	77	17	135	59	0	2	37	1.15
751265--751318	23	2.3	23	90	3	81	55	0	0	44	0.99
752200--752254	25	2.2	25	83	0	65	49	3	3	43	1.37
752973--753007	2	17.0	2	88	5	52	45	2	0	51	1.16
754444--754468	2	12.5	2	100	0	50	52	0	0	48	1.00
754963--755010	16	3.1	15	76	8	51	50	2	2	45	1.25
756325--756363	2	19.5	2	89	0	60	46	0	0	53	1.00
756941--756966	6	4.3	6	100	0	52	84	0	0	15	0.62
757248--757279	2	16.0	2	100	0	64	50	0	0	50	1.00
763373--763433	22	2.8	22	79	0	68	31	6	22	39	1.80
763970--763996	2	13.5	2	100	0	54	48	0	0	51	1.00
765240--765271	13	2.5	13	95	5	57	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
765282--765328	21	2.4	19	82	10	60	31	0	0	68	0.90
765290--765324	14	2.6	14	86	4	54	25	0	0	74	0.82
765601--765639	17	2.3	17	90	0	60	41	0	0	58	0.98
768143--768173	2	15.5	2	100	0	62	51	48	0	0	1.00
770535--770591	29	2.0	29	83	13	73	47	1	0	50	1.11
776794--776832	20	1.9	21	89	5	62	64	2	2	30	1.21
777192--777349	68	2.3	67	78	14	164	45	1	1	50	1.23
777312--777351	21	1.9	21	85	10	55	37	0	2	60	1.11
781722--781771	27	1.9	26	88	8	75	32	2	0	66	1.03
782349--782395	18	2.6	19	78	21	57	44	0	0	55	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16