genome.fa.s168.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold168
Parameters: 2 7 7 80 10 50 1000
Length:  2098754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  9  of  16  ( 1854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
932631--932665	18	1.9	18	88	0	52	51	0	2	45	1.16
932719--932768	12	4.6	11	77	20	52	44	0	0	56	0.99
932720--932761	21	2.0	21	86	13	61	40	0	0	59	0.97
933489--933552	19	3.6	17	77	18	51	43	0	0	56	0.99
933790--933821	16	1.9	16	93	6	55	56	0	0	43	0.99
934033--934105	5	15.4	5	74	17	59	39	0	1	58	1.06
934028--934085	24	2.4	25	80	11	75	43	0	1	55	1.10
934046--934108	9	7.1	9	77	12	51	39	0	1	58	1.07
934028--934108	24	3.6	23	72	21	73	40	0	1	58	1.06
934033--934105	14	5.1	14	77	12	60	39	0	1	58	1.06
934937--934989	26	2.0	26	96	0	97	49	0	13	37	1.42
936017--936051	16	2.1	17	89	5	54	37	0	0	62	0.95
939945--939990	17	2.7	18	87	12	62	67	0	0	32	0.91
939943--940002	21	3.0	20	76	20	63	66	1	0	31	1.01
943141--943178	17	2.2	17	90	0	58	63	2	7	26	1.35
943954--944000	21	2.3	20	85	3	58	25	0	14	59	1.36
944248--944295	16	2.9	18	70	20	50	58	0	0	41	0.98
944265--944319	20	2.7	20	80	11	58	54	3	1	40	1.28
944641--944680	21	1.9	21	90	10	64	37	0	0	62	0.95
944668--944727	19	3.2	19	69	17	54	53	1	0	45	1.10
944667--944736	21	3.5	21	71	25	62	52	1	0	45	1.09
945150--945194	22	2.0	24	91	8	76	68	2	0	28	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
945328--945418	32	3.3	26	72	20	78	41	0	0	58	0.98
945348--945463	8	14.1	8	68	17	51	40	0	0	59	0.97
945304--945463	59	2.8	56	73	15	139	40	0	0	59	0.97
945350--945412	32	1.9	33	87	3	92	46	0	0	53	1.00
945406--945465	11	5.9	11	70	21	51	35	0	0	65	0.93
945395--945440	17	2.6	17	83	13	58	36	0	0	63	0.95
945400--945454	28	1.9	29	85	10	78	38	0	0	61	0.96
952098--952166	2	35.0	2	97	2	131	50	0	0	49	1.00
953063--953105	17	2.7	15	80	13	50	41	2	0	55	1.12
953446--953494	21	2.3	22	86	10	66	57	0	2	40	1.10
953446--953496	22	2.4	21	78	15	59	56	0	1	41	1.10
953464--953529	28	2.5	26	76	14	71	54	0	1	43	1.09
953765--953791	2	13.5	2	100	0	54	48	0	0	51	1.00
955269--955330	15	3.9	16	77	10	56	61	1	1	35	1.16
955500--955531	2	16.0	2	100	0	64	50	0	0	50	1.00
957223--957252	13	2.4	13	94	5	53	10	3	6	80	1.01
957317--957349	16	2.1	16	94	0	57	45	0	0	54	0.99
959715--959753	17	2.4	16	86	4	51	53	2	0	43	1.14
961211--961289	23	3.3	25	83	13	96	58	1	1	39	1.14
961679--961730	22	2.4	22	83	3	61	51	1	0	46	1.12
961646--961707	30	2.1	30	82	11	74	58	0	0	41	0.98
961694--961737	21	2.0	22	95	4	81	43	4	0	52	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
963931--963982	12	4.2	12	85	9	70	50	0	0	50	1.00
964136--964169	3	11.3	3	100	0	68	67	0	0	32	0.91
965365--965394	4	7.5	4	100	0	60	50	0	0	50	1.00
966279--966312	3	11.3	3	100	0	68	32	0	0	67	0.91
966828--966870	12	3.4	12	81	12	50	37	0	0	62	0.95
966825--966893	14	5.0	14	72	16	56	42	0	0	57	0.98
966818--966870	26	2.0	26	85	0	70	33	0	0	66	0.92
966852--966901	27	1.9	25	84	8	64	52	0	0	48	1.00
967105--967164	2	31.0	2	80	12	72	51	0	1	46	1.10
967113--967265	29	5.3	29	70	12	100	51	1	1	45	1.20
967424--967462	13	2.8	13	84	7	51	53	2	2	41	1.28
967486--967530	16	2.8	16	82	0	54	62	2	0	35	1.08
967486--967528	11	4.1	10	82	8	50	62	2	0	34	1.08
967689--967727	17	2.4	16	91	4	60	56	0	0	43	0.99
967690--967759	6	12.3	6	80	17	55	54	0	0	45	0.99
970780--970813	2	17.0	2	100	0	68	50	0	0	50	1.00
971139--971192	24	2.2	23	78	18	56	40	0	1	57	1.09
971395--971421	3	9.0	3	100	0	54	33	0	0	66	0.92
971588--971664	32	2.4	33	78	8	88	51	0	0	48	1.00
972245--972287	17	2.3	19	88	11	63	51	0	0	48	1.00
972851--972881	15	2.1	15	94	5	55	77	3	19	0	0.90
973916--973996	31	2.4	35	80	12	98	55	2	0	41	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
973984--974048	24	3.0	24	65	25	61	40	0	0	60	0.97
974296--974337	22	2.0	21	85	4	57	35	0	4	59	1.19
974523--974554	13	2.4	14	94	5	57	46	0	0	53	1.00
975341--975366	11	2.4	11	100	0	52	38	0	0	61	0.96
978152--978465	104	3.0	104	97	0	603	52	8	2	36	1.46
978946--978997	24	2.1	25	82	10	63	53	0	0	46	1.00
982424--982458	17	2.1	17	94	0	61	37	0	0	62	0.95
982998--983031	6	5.7	6	85	0	50	50	2	0	47	1.16
983405--983463	21	2.8	22	75	17	61	64	1	3	30	1.20
983422--983465	21	2.2	21	88	8	65	63	2	4	29	1.26
983584--983645	27	2.2	28	86	11	83	41	0	0	58	0.98
984279--984303	13	1.9	13	100	0	50	40	12	8	40	1.72
986449--986521	25	2.9	25	70	16	62	43	0	0	56	0.99
987499--987525	2	13.5	2	100	0	54	48	0	0	51	1.00
988568--988607	13	3.0	13	85	3	53	62	0	2	35	1.09
990684--990712	11	2.6	11	100	0	58	44	0	0	55	0.99
990684--990742	6	9.8	6	71	14	50	54	1	0	44	1.10
990678--990755	12	6.3	12	75	10	59	56	1	0	42	1.07
993629--993670	16	2.6	16	78	14	50	47	0	0	52	1.00
993668--993696	12	2.3	13	94	5	51	44	0	0	55	0.99
995084--995111	1	28.0	1	100	0	56	0	0	0	100	0.00
1001338--1001411	2	36.0	2	89	5	112	45	0	5	48	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1001338--1001427	20	4.3	22	88	2	80	46	0	7	45	1.32
1004232--1004256	12	2.1	12	100	0	50	16	12	16	56	1.68
1004497--1004561	31	2.2	29	78	13	69	63	0	0	36	0.95
1004707--1004773	32	2.0	35	85	8	95	59	0	0	40	0.97
1004733--1004809	26	3.0	25	80	14	77	62	1	0	36	1.04
1004733--1004782	25	2.0	26	88	4	75	64	0	0	36	0.94
1004750--1004801	20	2.4	22	75	18	56	63	0	0	36	0.95
1004753--1004801	13	3.6	14	74	20	50	63	0	0	36	0.95
1004746--1004803	21	2.9	20	87	10	75	62	0	0	37	0.96
1011119--1011157	13	3.1	13	88	3	62	38	0	0	61	0.96
1011393--1011453	27	2.3	26	86	8	79	37	0	1	60	1.07
1012132--1012161	15	2.0	15	93	0	51	36	0	3	60	1.14
1012707--1012746	3	13.7	3	84	5	55	35	2	0	62	1.09
1016471--1016524	19	2.8	19	77	8	56	57	0	1	40	1.09
1016480--1016551	32	2.2	33	90	2	110	56	1	0	41	1.07
1016883--1016907	2	12.5	2	100	0	50	48	0	0	52	1.00
1017034--1017114	18	4.4	19	77	14	73	65	2	0	32	1.06
1017102--1017136	15	2.2	16	90	5	54	62	5	5	25	1.40
1018044--1018102	18	3.3	18	72	11	59	40	0	0	59	0.97
1018067--1018112	23	2.0	24	86	4	67	45	0	0	54	0.99
1018061--1018113	23	2.3	23	80	6	63	47	0	0	52	1.00
1025503--1025550	18	2.5	20	80	10	55	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1025502--1025550	20	2.4	21	80	16	59	57	0	0	42	0.99
1025470--1025599	32	3.8	33	74	17	104	54	0	0	45	0.99
1025519--1025575	22	2.7	23	78	13	59	54	0	0	45	0.99
1025545--1025595	14	3.6	14	76	15	52	56	0	0	43	0.99
1025454--1025597	71	2.0	71	81	10	170	54	1	0	43	1.14
1025995--1026042	16	2.9	16	85	14	55	64	0	2	33	1.05
1026269--1026323	21	2.6	22	75	21	55	63	0	0	36	0.95
1026300--1026339	15	2.7	15	84	11	55	47	0	0	52	1.00
1026365--1026403	20	2.0	20	90	10	62	46	0	0	53	1.00
1026635--1026672	4	9.2	4	94	5	67	26	0	0	73	0.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16