Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold168
Parameters: 2 7 7 80 10 50 1000
Length:  2098754

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   

This is table  16  of  16  ( 1854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2058604--2058641
2
19.0
2
100
0
76
50
0
0
50
1.00
2059012--2059036
2
12.5
2
100
0
50
52
0
0
48
1.00
2065177--2065220
2
21.5
2
95
4
79
47
2
0
50
1.13
2065301--2065344
2
22.0
2
100
0
88
50
0
0
50
1.00
2065824--2065857
2
17.0
2
100
0
68
50
0
0
50
1.00
2066262--2066326
2
32.5
2
90
0
85
43
0
7
49
1.31
2066265--2066325
22
2.8
22
97
0
113
40
0
8
50
1.32
2076114--2076157
2
22.0
2
100
0
88
0
50
0
50
1.00
2079799--2079839
14
2.9
14
81
0
55
26
0
29
43
1.55
2079951--2080033
34
2.4
34
81
2
94
25
2
33
38
1.69
2080054--2080084
16
1.9
16
93
0
53
22
0
29
48
1.51
2081991--2082032
2
21.5
2
90
4
68
50
0
2
47
1.14
2083159--2083296
16
8.6
16
80
0
123
39
32
18
10
1.84
2083127--2083280
48
3.2
48
77
1
157
42
30
16
10
1.81
2083161--2083296
48
2.8
48
78
0
137
39
32
17
10
1.84
2083431--2083475
14
3.1
14
83
3
54
17
2
24
55
1.53
2083501--2083550
22
2.3
22
85
0
64
36
0
18
46
1.49
2083504--2083542
15
2.7
15
84
4
53
35
0
15
48
1.45
2083625--2083690
13
4.8
13
75
17
62
33
0
33
33
1.58
2083902--2083942
21
2.0
21
90
0
64
29
0
26
43
1.55
2083911--2083956
21
2.2
21
84
0
56
26
4
26
43
1.73
2083910--2083975
14
4.6
14
73
3
60
30
3
25
40
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2083927--2083992
29
2.3
29
82
7
73
28
4
24
42
1.74
2084046--2084106
32
1.9
32
93
0
104
18
0
50
31
1.47
2084209--2084429
83
2.6
82
76
9
219
54
4
14
26
1.60
2084517--2084557
2
20.5
2
100
0
82
48
0
0
51
1.00
2088744--2088792
19
2.6
19
84
12
57
28
6
2
63
1.30
2088746--2088816
25
2.9
24
76
17
74
28
4
1
66
1.19
2088927--2088981
14
3.9
14
82
0
74
10
0
47
41
1.39
2088894--2089001
49
2.2
49
85
4
139
15
0
41
42
1.47
2088952--2089043
21
4.4
21
76
4
96
8
3
42
45
1.51
2088929--2089009
28
2.9
28
80
10
69
12
1
43
43
1.50
2088964--2089096
41
3.2
40
76
12
117
9
7
40
42
1.66
2088970--2089037
28
2.5
28
80
9
77
8
4
39
47
1.55
2088971--2089038
14
4.9
14
78
10
68
8
4
39
47
1.55
2088926--2089043
14
8.4
14
71
6
60
10
2
44
43
1.51
2088993--2089075
14
6.1
14
73
9
73
7
7
39
45
1.59
2091696--2091738
16
2.8
16
89
6
63
4
16
41
37
1.69
2091675--2098576
22
313.2
21
73
20
4163
3
13
42
40
1.63
2091840--2091912
17
4.5
17
78
11
75
2
15
42
39
1.61
2091826--2092276
16
28.9
15
69
24
162
3
15
41
39
1.66
2092184--2092237
13
4.0
13
75
17
56
0
18
40
40
1.51
2092222--2092812
37
16.1
33
74
20
225
3
2
52
40
1.34
2092267--2092806
8
70.2
8
72
18
227
4
1
53
40
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2092836--2098576
15
391.3
14
74
20
4007
3
14
41
40
1.64
2093181--2093228
18
2.7
17
83
6
60
6
12
45
35
1.67
2093938--2093962
11
2.3
11
100
0
50
0
20
48
32
1.50
2095130--2095163
12
2.8
12
100
0
68
0
14
35
50
1.44
2089230--2098576
7
1286.0
7
76
18
4905
3
11
45
40
1.57
2098630--2098750
1
121.0
1
70
0
71
2
84
0
12
0.77
2098635--2098753
8
16.0
8
78
15
123
2
84
0
12
0.78
2098630--2098749
7
16.6
7
82
12
145
2
84
0
12
0.77
2098630--2098749
15
8.3
14
84
9
145
2
84
0
12
0.77
2098630--2098747
36
3.2
36
84
10
152
2
83
0
12
0.78

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16

The End!