genome.fa.s172.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold172
Parameters: 2 7 7 80 10 50 1000
Length:  1975206

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  7  of  11  ( 1205 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
887419--887444	13	2.0	13	100	0	52	38	15	15	30	1.88
888965--889022	19	3.0	20	85	7	84	34	15	17	32	1.91
889006--889030	13	1.9	13	100	0	50	32	16	16	36	1.90
888987--889051	33	2.0	32	88	8	96	38	15	15	30	1.88
893075--893155	28	2.9	29	78	8	80	60	7	17	14	1.56
899057--899108	20	2.5	20	81	3	59	38	13	17	30	1.88
899898--900677	390	2.0	390	96	0	1434	26	17	15	40	1.89
903272--903329	27	2.2	26	82	8	82	31	41	8	18	1.81
905948--906001	20	2.7	20	88	11	76	33	18	14	33	1.92
906070--906096	13	2.1	13	100	0	54	40	14	14	29	1.86
906812--907768	153	6.3	149	75	8	634	28	13	17	41	1.87
906812--907671	307	2.8	302	79	7	846	28	13	17	41	1.87
908226--908282	16	3.6	16	82	0	69	8	14	35	42	1.76
908480--908519	18	2.2	18	86	8	55	50	2	2	45	1.28
908875--908915	17	2.4	17	87	0	55	41	0	0	58	0.98
909192--909221	16	1.9	16	93	6	53	26	10	3	60	1.45
909758--909795	16	2.4	16	86	0	58	7	18	31	42	1.79
909787--909830	16	2.8	16	79	6	54	6	9	40	43	1.63
910842--910912	33	2.2	33	94	0	124	35	16	11	36	1.85
913272--913664	79	5.0	80	75	10	317	27	21	11	38	1.89
913272--913664	157	2.5	156	79	7	411	27	21	11	38	1.89
913272--913662	80	5.0	78	74	8	301	27	21	12	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
913622--913692	28	2.5	28	81	0	97	23	19	18	38	1.93
913543--913875	107	3.1	106	78	4	339	27	24	15	33	1.95
914884--914989	20	4.8	20	73	18	86	31	15	8	45	1.76
914874--914967	49	1.9	49	95	0	170	28	15	10	44	1.80
914872--914950	24	3.2	24	67	28	67	27	15	10	46	1.77
917912--918052	43	3.1	43	75	11	156	32	16	24	26	1.96
917817--918050	49	4.9	49	77	10	223	30	17	25	26	1.97
917861--918052	92	2.1	95	86	3	264	31	16	26	26	1.96
918047--918851	34	24.9	33	74	11	562	37	12	30	19	1.89
918047--918935	61	13.9	66	73	11	574	37	12	30	19	1.90
918448--918779	27	10.9	27	71	18	133	35	12	31	20	1.90
918475--918936	34	14.8	33	73	15	278	36	13	28	21	1.91
918078--918878	95	8.3	95	79	9	641	37	12	30	19	1.89
918729--918965	119	2.0	117	82	5	289	33	15	28	22	1.94
918763--919061	31	9.7	31	81	7	267	32	15	27	24	1.95
921416--921441	13	2.0	13	100	0	52	30	23	15	30	1.95
921524--921579	21	2.6	22	94	5	105	37	10	25	26	1.88
921567--921597	10	3.1	10	90	0	53	41	6	29	22	1.78
921784--921824	21	2.0	21	85	9	57	39	9	12	39	1.76
936038--936067	15	2.0	15	100	0	60	46	40	0	13	1.43
941791--941836	13	3.6	13	82	5	58	80	17	0	2	0.81
943124--943629	28	17.5	28	85	4	555	29	30	16	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
943124--943629	114	4.4	114	82	6	597	29	30	16	23	1.96
943121--943647	58	9.1	57	83	5	485	29	30	17	23	1.97
943382--943490	30	3.6	32	72	12	95	30	30	16	22	1.96
944542--944665	20	5.8	20	72	20	90	31	16	11	41	1.83
944591--944667	20	3.9	20	83	6	95	33	14	10	41	1.80
947787--947905	42	2.8	42	92	0	193	8	46	2	42	1.47
947820--947895	12	6.9	11	75	15	52	9	48	2	39	1.49
947811--947896	24	3.8	24	72	17	85	10	45	2	41	1.51
947802--947872	18	3.6	18	69	20	52	9	43	2	43	1.52
949224--949258	16	2.2	16	94	0	61	34	14	8	42	1.76
957439--957480	21	2.0	21	85	0	57	7	42	2	47	1.43
959430--959488	27	2.2	27	87	3	84	15	15	37	32	1.88
960450--960699	101	2.4	104	77	6	301	36	15	22	26	1.93
960455--960707	52	4.9	52	79	4	253	36	15	22	26	1.93
960834--961005	81	2.1	81	86	3	240	30	18	28	22	1.97
960834--961026	81	2.4	82	83	6	207	32	18	26	21	1.97
961012--961179	79	2.1	79	85	1	221	33	18	23	24	1.96
961431--961569	31	4.4	31	74	13	140	23	17	30	28	1.97
961323--961563	96	2.4	96	82	7	261	23	18	28	29	1.98
961607--962009	36	11.8	36	74	9	202	22	20	25	31	1.98
961848--961935	31	2.8	32	84	5	117	23	23	23	28	2.00
961591--961952	98	3.6	97	76	10	357	22	20	26	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
963074--963148	20	3.8	20	76	0	78	36	13	10	40	1.79
963074--963151	40	2.0	39	84	2	102	35	12	11	39	1.80
970066--970111	23	2.0	24	86	4	67	71	10	13	4	1.27
970396--970420	9	2.8	9	100	0	50	84	16	0	0	0.63
971469--971768	27	10.9	27	90	3	377	25	32	15	27	1.95
971469--971767	55	5.5	55	90	3	408	25	32	15	27	1.95
971469--971804	82	4.0	81	84	5	395	25	32	15	27	1.95
971473--973152	28	57.4	28	82	7	817	28	29	18	22	1.98
971697--972852	32	38.1	32	84	6	950	29	29	19	21	1.98
972859--972898	20	2.0	20	85	0	53	25	35	15	25	1.94
972781--973094	104	2.9	104	78	8	306	27	31	17	22	1.97
978185--978303	42	2.8	42	89	0	184	8	45	2	43	1.47
979958--980166	45	4.5	45	74	11	165	22	27	18	32	1.97
979992--980166	47	3.7	47	80	7	196	21	28	17	32	1.96
979958--980166	92	2.3	92	82	5	244	22	27	18	32	1.97
980545--980619	20	3.8	20	78	0	87	33	13	13	40	1.83
980545--980622	40	2.0	39	87	2	111	33	12	14	39	1.84
986716--986836	31	3.7	31	84	5	125	23	23	23	28	1.99
986778--986848	36	1.9	37	97	2	135	23	19	26	29	1.98
992944--993227	155	1.8	156	84	2	392	37	21	16	25	1.93
993362--993818	165	2.8	164	85	3	614	40	12	12	34	1.81
1000739--1000795	18	3.1	19	79	16	66	15	38	0	45	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1000754--1000794	9	4.6	9	87	0	55	14	36	0	48	1.44
1000735--1000804	30	2.3	31	80	11	83	14	42	0	42	1.45
1000761--1000796	9	4.0	9	92	0	63	13	41	0	44	1.44
1000778--1000817	13	3.2	13	82	7	55	12	47	0	40	1.41
1004062--1004184	42	2.9	42	89	2	176	43	2	44	8	1.48
1010364--1010438	20	3.7	19	78	8	69	44	10	16	29	1.81
1010717--1010897	89	2.0	89	100	0	362	35	14	25	24	1.93
1012340--1012410	12	6.5	11	76	15	51	39	2	47	9	1.51
1012336--1012443	42	2.6	42	93	0	189	40	2	47	9	1.50
1020425--1020495	18	3.6	18	69	20	52	9	42	2	45	1.52
1020409--1020528	42	2.8	42	88	1	177	9	45	2	42	1.49
1023529--1023710	90	2.0	89	98	1	355	35	14	25	24	1.93
1025607--1026073	234	2.0	233	88	1	693	27	19	14	38	1.91
1026822--1026878	28	2.0	28	100	0	114	47	10	14	28	1.76
1027658--1027692	12	2.9	12	84	16	54	40	0	48	11	1.39
1027679--1027725	9	5.2	9	86	0	67	46	0	38	14	1.45
1027682--1027725	18	2.4	18	96	0	79	47	0	36	15	1.46
1035004--1035068	28	2.3	28	84	7	87	15	15	9	60	1.59
1035014--1035085	28	2.6	28	82	6	76	13	18	8	59	1.58
1037337--1037412	12	6.9	11	75	15	52	39	2	48	9	1.49
1037336--1037421	24	3.8	24	72	17	85	41	2	45	10	1.51
1037327--1037445	42	2.8	42	92	0	193	42	2	46	8	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1052281--1053191	62	14.6	61	82	4	919	25	22	18	33	1.96
1052281--1053171	123	7.2	122	82	3	942	25	22	18	33	1.97
1053158--1053549	42	9.4	42	71	11	243	21	25	12	41	1.88
1053152--1053549	85	4.8	82	73	10	238	21	24	12	41	1.87
1053190--1053366	41	4.2	40	80	8	158	20	22	10	45	1.82
1056780--1057046	80	3.4	79	82	4	342	25	25	14	34	1.94
1056978--1057094	52	2.3	50	85	4	146	29	25	11	34	1.90
1056996--1057094	52	1.9	52	87	4	148	29	26	8	36	1.85
1057029--1057279	79	3.2	78	84	4	317	28	23	12	34	1.92
1056899--1057172	129	2.1	129	81	5	331	28	24	13	34	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11