genome.fa.s172.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold172
Parameters: 2 7 7 80 10 50 1000
Length:  1975206

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  10  of  11  ( 1205 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1844301--1845057	56	13.2	56	79	8	589	29	31	17	21	1.96
1844811--1845106	60	4.9	60	78	9	252	30	32	18	19	1.95
1849611--1849637	13	2.1	13	100	0	54	40	7	14	37	1.74
1849918--1849967	26	1.9	26	95	0	91	48	20	8	24	1.76
1858366--1858437	20	3.6	20	77	7	83	29	19	12	38	1.88
1858366--1858457	40	2.3	40	96	0	166	30	19	13	36	1.90
1858386--1858459	20	3.7	20	78	7	96	33	20	13	32	1.91
1858488--1858537	19	2.5	20	83	3	75	36	14	18	32	1.90
1858404--1858687	135	2.1	135	98	0	550	30	17	19	32	1.95
1858622--1858678	19	2.9	20	82	10	73	33	14	19	33	1.91
1859431--1860216	152	5.2	150	79	7	802	39	20	15	23	1.91
1859400--1860207	304	2.7	302	82	4	961	39	20	15	23	1.91
1860271--1860543	151	1.8	151	86	3	397	40	19	14	26	1.90
1859874--1860902	343	3.0	343	90	2	1511	40	19	14	25	1.90
1860558--1860893	151	2.2	150	82	5	390	41	19	13	25	1.89
1862242--1862283	22	1.9	22	85	9	59	9	14	14	61	1.55
1862505--1862680	89	2.0	89	84	6	232	10	19	17	52	1.73
1862686--1862787	53	1.9	53	84	7	136	18	17	14	49	1.80
1862727--1862982	101	2.5	101	88	5	374	18	21	16	43	1.88
1864590--1864620	5	6.0	5	92	7	53	19	0	0	80	0.71
1864590--1864620	11	2.9	11	95	4	55	19	0	0	80	0.71
1864594--1864627	16	2.1	16	88	0	50	20	0	2	76	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1866088--1866165	32	2.4	32	84	0	102	39	11	28	20	1.87
1867896--1867925	10	2.9	10	95	5	51	0	0	10	90	0.47
1867895--1867926	13	2.5	13	95	5	57	0	0	9	90	0.45
1869564--1869704	20	7.0	20	71	15	103	38	15	14	31	1.88
1869629--1869699	19	3.7	19	84	3	106	40	16	12	29	1.86
1869685--1869711	13	2.1	13	100	0	54	40	14	14	29	1.86
1877419--1877474	20	2.8	19	89	5	76	37	16	17	28	1.91
1877526--1877590	21	3.6	19	73	26	70	44	15	12	27	1.82
1877544--1877569	13	2.0	13	100	0	52	38	15	15	30	1.88
1877526--1877590	34	2.0	33	93	6	114	44	15	12	27	1.82
1879755--1879804	21	2.3	21	80	10	57	56	4	18	22	1.58
1883709--1883746	13	2.9	13	92	0	58	36	18	13	31	1.89
1883858--1883903	21	2.2	20	81	11	58	32	19	4	43	1.71
1889725--1890093	155	2.4	155	79	6	358	38	18	15	27	1.91
1890190--1890652	155	2.9	157	82	6	499	42	12	12	32	1.81
1896040--1896080	20	2.0	20	95	0	73	53	24	2	19	1.57
1900784--1900809	9	2.9	9	100	0	52	34	23	11	30	1.90
1903663--1904311	49	13.9	49	81	9	784	25	25	18	30	1.98
1903758--1904330	92	6.2	92	94	0	959	25	26	18	30	1.98
1903663--1904330	184	3.6	184	93	1	1086	25	25	18	30	1.98
1904352--1904409	20	3.0	20	84	2	73	29	10	13	46	1.77
1904463--1904609	52	2.8	53	83	4	149	35	18	14	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1908335--1908685	174	2.0	176	94	1	616	24	21	22	31	1.98
1909374--1909440	37	1.9	35	88	11	102	29	25	11	32	1.92
1909919--1909944	13	2.0	13	100	0	52	30	23	15	30	1.95
1910027--1910082	21	2.6	22	94	5	105	37	10	25	26	1.88
1910070--1910100	10	3.1	10	90	0	53	41	6	29	22	1.78
1913291--1913326	6	5.8	6	87	6	54	86	11	2	0	0.68
1913288--1913339	12	4.1	12	83	11	68	86	11	1	0	0.65
1913288--1913339	13	4.0	14	82	9	58	86	11	1	0	0.65
1913288--1913342	22	2.5	22	88	5	76	85	10	3	0	0.72
1914283--1914470	31	6.0	30	85	8	191	22	31	15	29	1.95
1914417--1914990	34	16.8	34	82	8	666	20	33	12	33	1.90
1914474--1914990	71	7.4	70	88	4	685	19	33	11	34	1.89
1914414--1915010	105	5.8	101	82	8	654	20	34	12	33	1.89
1914995--1915162	33	5.1	33	86	5	223	28	36	17	17	1.92
1914414--1915043	141	4.6	137	79	10	515	20	34	12	32	1.90
1915001--1915169	65	2.6	65	87	4	236	30	36	17	15	1.91
1915162--1916205	49	21.8	48	74	13	775	25	25	17	32	1.97
1915157--1915815	92	7.1	92	90	3	953	25	25	17	31	1.97
1915716--1916232	43	10.2	54	71	18	205	25	24	15	33	1.95
1915716--1915850	52	2.6	52	83	2	162	25	24	15	34	1.95
1915889--1916161	43	6.1	43	83	10	350	25	25	17	31	1.97
1915880--1916205	92	3.5	92	93	2	537	25	24	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1915487--1916333	399	2.1	400	96	0	1572	25	24	16	33	1.96
1916115--1916249	52	2.6	52	83	4	164	25	22	14	36	1.93
1917135--1917159	13	1.9	13	100	0	50	36	16	16	32	1.90
1917115--1917181	33	2.0	33	88	0	98	32	11	14	40	1.83
1917255--1917372	52	2.3	52	96	0	218	34	17	17	29	1.94
1920896--1921245	174	2.0	175	94	0	621	24	20	22	32	1.98
1923422--1923471	6	8.7	6	79	16	61	86	14	0	0	0.58
1923420--1923471	14	3.9	13	80	9	61	86	13	0	0	0.57
1923420--1923470	19	2.8	18	85	11	68	86	13	0	0	0.58
1923428--1923471	14	3.1	15	83	9	65	86	13	0	0	0.57
1924419--1924596	30	5.8	30	90	4	243	23	29	19	28	1.98
1924631--1925060	68	6.2	67	80	11	412	20	34	11	33	1.89
1925049--1925186	33	4.3	32	84	4	181	31	36	16	15	1.91
1925043--1925186	65	2.2	64	84	7	184	29	37	15	16	1.90
1925179--1926407	49	25.8	48	76	12	1001	25	25	17	31	1.97
1925174--1925832	92	7.1	92	90	3	989	25	26	17	30	1.97
1925174--1926416	184	6.5	184	86	7	1660	25	25	17	31	1.97
1925733--1926437	43	14.3	54	75	15	337	25	24	16	33	1.96
1925906--1926363	43	10.1	43	80	10	520	25	24	17	31	1.97
1925897--1926416	92	5.6	92	93	0	842	25	24	17	32	1.97
1926317--1926451	52	2.6	52	84	4	173	25	23	14	35	1.94
1925315--1926535	584	2.1	584	94	1	2165	25	25	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1927318--1927384	33	2.0	33	88	0	98	32	11	14	40	1.83
1927338--1927362	13	1.9	13	100	0	50	36	16	16	32	1.90
1927458--1927578	52	2.3	52	95	0	215	34	19	18	28	1.95
1941836--1941898	30	2.1	30	96	0	117	36	20	17	25	1.94
1941866--1941908	22	2.0	22	100	0	86	32	18	25	23	1.97
1942496--1943523	42	24.6	42	72	9	464	19	29	16	34	1.94
1942498--1943524	84	12.3	84	77	5	767	19	29	16	34	1.94
1942914--1943148	119	2.0	120	82	2	294	18	30	15	36	1.92
1944048--1944094	8	5.9	8	80	7	51	72	0	0	27	0.85
1944053--1944094	17	2.6	16	88	7	66	71	0	0	28	0.86
1944053--1944124	30	2.4	29	80	13	76	65	0	1	33	1.02
1944373--1944402	12	2.5	12	94	0	51	16	16	16	50	1.79
1944441--1944486	15	3.2	15	81	6	51	19	21	15	43	1.87
1944783--1944891	56	1.9	56	90	3	175	47	14	24	12	1.79
1945073--1945110	14	2.8	14	88	4	51	76	0	15	7	1.01
1945360--1945400	20	2.0	20	95	0	73	53	24	2	19	1.57
1948190--1948215	13	2.0	13	100	0	52	30	15	15	38	1.88
1948170--1948233	32	2.0	33	87	3	94	28	14	17	40	1.88
1948897--1948931	16	2.2	16	100	0	70	14	40	5	40	1.69
1948932--1948975	21	2.1	21	83	8	54	25	31	4	38	1.76
1950766--1950791	13	2.0	13	100	0	52	38	15	15	30	1.88
1950798--1950860	25	2.5	25	100	0	126	33	15	15	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1953817--1953842	13	2.0	13	100	0	52	38	15	15	30	1.88
1956073--1956105	16	2.1	16	88	5	50	30	12	3	54	1.52
1958159--1958184	13	2.0	13	100	0	52	30	15	15	38	1.88
1960685--1960938	128	2.0	129	90	2	404	42	0	4	52	1.26
1960720--1960914	65	3.0	65	70	13	186	40	1	4	54	1.28
1964354--1964408	21	2.5	21	78	21	60	34	0	1	63	1.05
1964659--1964725	29	2.4	28	82	5	89	61	1	4	32	1.25
1965803--1965860	22	2.7	22	78	7	66	55	0	3	41	1.17
1966710--1966738	2	14.5	2	100	0	58	0	0	48	51	1.00
1968920--1968965	24	1.9	24	86	0	65	41	28	6	23	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11