genome.fa.s172.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold172
Parameters: 2 7 7 80 10 50 1000
Length:  1975206

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1205 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344679--344741	32	2.0	32	96	0	117	36	15	12	34	1.86
344779--344856	21	3.7	21	89	1	111	37	16	11	34	1.85
347435--347480	21	2.2	20	82	14	58	21	17	19	41	1.90
360532--360584	10	5.3	10	86	8	72	86	13	0	0	0.56
360535--360590	29	2.0	28	92	3	94	83	16	0	0	0.64
361617--361701	37	2.3	37	97	0	161	24	15	16	43	1.86
362064--362270	28	7.4	27	77	10	177	32	29	19	18	1.95
362059--362229	56	3.1	56	86	3	211	30	29	19	20	1.97
362094--362270	83	2.1	84	81	6	207	32	29	18	18	1.95
367515--367564	20	2.5	20	100	0	100	50	12	16	22	1.77
368584--368645	15	4.1	15	76	12	54	75	3	1	19	1.02
368584--368629	22	2.1	22	84	8	58	78	2	2	17	0.96
368585--368635	24	2.1	24	85	0	66	76	1	1	19	0.98
378335--378487	52	2.9	52	81	5	175	36	14	22	26	1.93
378547--378730	32	5.7	31	85	5	224	20	20	28	31	1.97
378547--378739	97	2.0	98	84	7	259	21	19	28	30	1.97
378863--378932	28	2.5	28	88	2	97	31	20	22	25	1.98
380199--380530	79	4.2	79	85	0	423	33	14	25	27	1.94
380470--380631	51	3.2	50	83	3	180	34	12	24	29	1.91
382935--382973	20	2.0	20	94	0	69	41	10	15	33	1.81
382955--382982	13	2.2	13	100	0	56	42	14	14	28	1.84
383301--383437	52	2.6	52	85	0	184	34	17	23	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383602--383673	31	2.3	33	85	9	105	18	18	30	33	1.94
383857--383923	28	2.4	28	82	7	75	31	22	20	25	1.98
384273--384397	52	2.4	52	78	0	133	32	19	23	24	1.97
384575--384655	32	2.5	34	84	8	105	16	13	35	34	1.88
384843--384904	28	2.2	28	88	0	88	25	19	29	25	1.99
385224--385325	52	2.0	52	86	0	141	34	16	23	25	1.95
385440--385542	32	3.2	32	84	2	127	21	17	29	32	1.96
386003--386165	61	2.7	59	80	6	193	34	13	26	24	1.93
386197--386322	52	2.4	51	76	6	137	41	13	20	24	1.88
386439--386515	32	2.4	32	88	2	109	24	14	31	29	1.94
387066--387218	51	3.0	52	81	3	157	33	16	22	26	1.95
387103--387218	52	2.3	51	86	4	153	33	17	23	25	1.96
387129--387278	52	2.9	52	77	4	126	36	17	22	24	1.94
387378--387465	32	2.8	33	85	3	92	23	17	28	30	1.97
387404--387477	32	2.3	32	95	0	130	22	21	27	28	1.99
388049--388254	52	4.0	52	80	3	209	34	15	24	25	1.94
388049--388254	104	2.0	104	80	5	238	34	15	24	25	1.94
386689--389908	967	3.3	973	81	7	3738	29	16	25	28	1.96
388331--388457	32	3.8	33	79	16	136	18	16	33	31	1.93
388613--388696	28	3.0	28	80	1	89	26	17	29	26	1.98
389026--389158	52	2.6	52	84	2	160	32	18	26	23	1.97
389125--389229	52	2.0	51	83	1	129	39	14	22	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389563--389649	28	3.1	28	86	1	113	25	17	31	26	1.97
396982--397007	13	2.0	13	100	0	52	38	15	15	30	1.88
398724--398750	13	2.1	13	100	0	54	29	14	14	40	1.86
405760--405826	33	2.0	33	88	5	100	25	28	16	29	1.97
406129--406173	21	2.1	22	95	4	83	40	4	24	31	1.75
406701--406755	20	2.8	19	86	8	67	34	16	10	38	1.84
407829--407868	21	1.9	21	94	0	71	42	10	10	37	1.72
409873--409928	19	2.9	19	75	2	67	37	10	19	32	1.86
410466--410617	32	4.7	33	81	5	145	19	15	31	33	1.93
410789--410851	28	2.3	27	86	8	83	26	17	28	26	1.98
411420--411496	32	2.4	33	82	2	84	27	16	27	28	1.97
411687--411741	28	2.0	28	85	0	74	25	21	27	25	2.00
412077--412166	43	2.1	43	81	8	103	33	15	21	30	1.94
412153--412277	52	2.4	53	82	2	139	39	13	25	21	1.90
412396--412460	31	2.1	31	82	2	76	21	18	29	30	1.97
412642--412711	28	2.5	28	83	2	88	24	21	27	27	1.99
413134--413259	52	2.4	52	81	0	144	38	15	23	23	1.92
413381--413454	32	2.3	33	85	2	96	27	16	28	28	1.97
413625--413698	28	2.7	28	80	2	87	22	18	32	25	1.97
414034--414124	43	2.1	43	84	8	114	29	16	26	27	1.97
414099--414230	52	2.5	52	80	8	144	37	16	24	21	1.93
414353--414422	31	2.2	31	82	2	86	24	14	31	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415002--415152	52	2.9	52	76	10	164	31	16	26	25	1.97
415338--415400	32	2.0	32	90	0	99	19	17	33	30	1.95
411199--418096	980	7.0	982	84	4	8001	29	16	25	29	1.96
415982--416190	52	4.0	52	75	8	163	34	15	24	24	1.95
416272--416345	38	2.1	36	83	14	93	14	18	35	31	1.92
416590--416652	28	2.2	28	94	0	108	20	22	30	26	1.98
417068--417205	52	2.7	52	78	4	145	41	13	21	23	1.89
417275--417414	32	4.4	32	80	7	144	15	17	31	35	1.92
417294--417414	63	1.9	64	84	5	165	17	19	29	33	1.95
417275--417425	64	2.4	65	80	10	177	17	16	31	34	1.92
417596--417660	28	2.4	27	76	2	67	26	18	26	29	1.98
418173--418314	32	4.5	31	81	5	115	17	14	29	38	1.90
418173--418324	64	2.4	64	82	3	171	19	13	30	36	1.90
419665--419690	13	2.0	13	100	0	52	30	15	15	38	1.88
419645--419708	32	2.0	33	87	9	96	28	14	15	42	1.86
422237--422262	13	2.0	13	100	0	52	38	15	15	30	1.88
427695--427752	13	4.0	13	76	23	62	29	15	15	39	1.88
427675--427770	32	3.0	32	93	4	158	28	14	15	41	1.86
427708--427770	19	3.6	19	76	24	84	28	15	15	39	1.89
428411--428563	32	4.8	32	83	8	170	21	15	31	32	1.94
428411--428563	64	2.4	64	84	9	204	21	15	31	32	1.94
428735--428817	28	3.0	27	84	10	98	24	18	30	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437184--437216	17	2.0	17	88	5	50	36	0	24	39	1.56
443739--443777	20	2.0	20	100	0	78	38	10	15	35	1.81
444953--445199	97	2.5	98	76	10	229	27	28	12	31	1.93
445156--445223	27	2.5	27	100	0	136	26	39	16	17	1.90
451102--451168	33	2.0	33	91	0	107	25	26	16	31	1.96
451469--451520	22	2.3	23	90	6	79	50	5	21	23	1.70
452582--452646	30	2.2	30	81	13	82	26	10	23	40	1.87
455730--455818	32	2.8	32	81	5	90	20	13	30	35	1.91
455990--456052	28	2.3	27	86	2	81	28	19	26	25	1.98
456506--456578	20	3.6	20	81	3	101	35	13	19	31	1.91
456506--456600	41	2.3	42	96	1	174	40	12	17	29	1.87
456639--456664	13	2.0	13	100	0	52	38	15	15	30	1.88
457260--458010	370	2.0	373	95	2	1348	30	23	18	27	1.97
461104--461134	15	2.1	15	93	0	53	48	16	22	12	1.80
463149--463227	20	3.7	21	75	15	72	26	13	15	44	1.84
463214--463252	13	3.0	13	96	0	69	30	17	15	35	1.91
465030--465076	23	2.0	23	100	0	94	34	4	27	34	1.77
465708--465780	20	3.6	20	81	3	101	35	13	19	31	1.91
465708--465802	41	2.3	42	96	1	174	40	12	17	29	1.87
465841--465866	13	2.0	13	100	0	52	38	15	15	30	1.88
466642--466858	61	3.5	61	77	5	168	41	14	21	22	1.89
466978--467104	32	3.8	33	76	14	116	18	16	31	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467275--467348	28	2.7	28	83	6	89	24	17	33	24	1.96
467688--467772	43	2.0	43	81	4	100	27	17	23	31	1.97
467778--467880	52	2.0	52	82	3	127	38	17	23	20	1.93
468665--468859	52	3.8	51	79	2	210	34	16	24	24	1.96
468668--468859	104	1.8	104	85	4	271	34	16	25	24	1.95
468816--468927	60	1.9	59	84	1	152	34	13	25	26	1.93
466806--471042	981	4.3	982	85	3	5313	29	16	25	29	1.96
469648--469840	52	3.7	52	76	2	165	34	13	25	25	1.93
469966--470026	32	1.9	32	86	0	86	19	16	34	29	1.94
470238--470303	28	2.4	28	94	0	114	21	22	28	27	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11