genome.fa.s175.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold175
Parameters: 2 7 7 80 10 50 1000
Length:  1254584

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 923 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
976147--976217	35	2.0	35	91	0	115	28	25	12	33	1.92
979802--979842	21	2.0	21	85	0	55	19	24	0	56	1.42
981387--981784	156	2.5	156	77	6	396	38	18	16	26	1.92
984424--985185	28	27.0	27	84	5	758	31	28	17	23	1.97
984424--985184	84	9.0	84	84	4	849	31	28	17	23	1.97
985236--985298	29	2.2	28	82	2	72	31	23	15	28	1.96
984422--985747	28	45.6	27	79	9	703	30	28	16	23	1.96
985273--985996	62	11.6	62	76	6	493	29	30	16	23	1.96
985268--986021	32	24.2	31	79	5	544	29	30	16	23	1.96
985639--985779	30	4.7	28	77	11	111	31	34	14	19	1.92
985639--985810	29	5.6	29	77	10	123	30	33	13	22	1.93
986107--986197	47	1.9	48	93	2	157	23	25	12	39	1.89
986089--986240	47	3.0	50	76	12	150	23	21	13	40	1.89
986209--986585	61	6.3	61	75	8	247	22	25	15	36	1.93
986540--987018	51	9.3	52	78	5	434	25	26	14	33	1.95
986540--986998	103	4.4	103	83	5	509	25	26	15	32	1.95
987055--987449	44	9.2	43	70	9	225	15	30	14	38	1.88
987184--987448	85	3.1	85	83	5	327	14	29	15	40	1.87
987075--987320	130	1.9	130	87	0	357	15	31	15	38	1.88
988012--988138	63	2.0	63	90	3	202	40	15	17	26	1.90
990713--990898	96	1.9	97	81	7	227	29	20	11	38	1.88
992153--992344	63	3.0	63	97	0	357	26	18	16	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
992336--992407	9	8.1	9	86	7	78	19	0	6	73	1.05
992755--992809	20	2.8	20	94	0	92	40	14	10	34	1.81
994371--994901	164	3.2	164	83	4	626	50	8	9	31	1.65
995908--996353	85	5.3	84	81	2	455	45	15	21	17	1.84
996205--996353	42	3.5	40	70	18	106	47	14	21	16	1.82
996402--996478	36	2.2	36	80	2	84	46	16	18	18	1.84
996419--997148	35	20.7	35	76	9	491	39	10	25	24	1.87
996415--996805	168	2.3	168	79	8	414	39	9	25	24	1.86
996435--996825	203	1.9	204	82	4	486	39	9	25	25	1.86
996787--997013	117	1.9	117	81	1	267	39	9	26	24	1.85
996752--997036	152	1.9	152	80	1	338	38	9	27	23	1.87
996717--997087	187	2.0	187	81	2	431	38	9	27	24	1.86
996704--997122	222	1.9	222	82	2	527	39	9	26	24	1.86
999160--999204	21	2.1	22	84	12	58	11	20	2	66	1.33
1008097--1008334	83	2.9	83	77	3	246	42	13	26	18	1.87
1008681--1008735	20	2.8	20	88	2	76	32	14	18	34	1.91
1008765--1008802	20	1.9	20	88	0	58	31	13	15	39	1.86
1008764--1008830	33	2.0	33	88	5	100	32	13	14	38	1.86
1015940--1016140	52	3.9	52	95	1	341	29	17	19	33	1.95
1016129--1016153	13	1.9	13	100	0	50	36	16	16	32	1.90
1016216--1016240	13	1.9	13	100	0	50	32	16	16	36	1.90
1016298--1016339	21	2.0	21	90	0	66	35	14	14	35	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1019698--1019742	19	2.3	19	84	3	54	33	8	17	40	1.81
1019797--1019828	13	2.5	13	89	0	55	37	15	12	34	1.85
1020707--1020814	44	2.5	44	83	6	121	37	21	21	20	1.95
1021076--1021189	44	2.6	44	87	4	167	42	14	22	21	1.88
1020918--1021212	158	1.9	158	83	2	387	42	13	22	21	1.88
1021076--1021211	44	3.1	42	75	16	123	44	13	21	21	1.86
1021315--1021563	35	7.1	35	84	2	277	42	12	23	22	1.87
1021298--1021563	105	2.5	105	82	4	320	41	12	22	22	1.88
1021806--1021977	90	1.9	90	90	0	272	30	18	23	27	1.97
1023995--1024027	13	2.8	12	86	13	50	0	12	0	87	0.53
1023995--1024027	6	5.5	6	89	10	50	0	12	0	87	0.53
1029395--1029468	20	3.7	19	82	10	78	36	13	13	36	1.84
1030461--1031179	28	25.4	28	85	4	644	22	16	31	28	1.96
1030485--1031162	169	4.0	170	84	3	776	21	16	32	29	1.95
1031030--1031386	27	13.1	27	89	2	464	28	13	31	25	1.94
1030463--1031389	56	16.5	56	83	4	624	23	15	31	28	1.96
1039771--1039811	21	2.0	21	85	9	57	39	12	9	39	1.76
1039851--1039921	20	3.6	19	77	7	70	40	16	12	29	1.86
1039904--1040027	34	3.5	34	72	20	119	36	18	17	27	1.94
1039944--1039993	19	2.6	19	100	0	100	40	20	12	28	1.87
1039891--1040046	72	2.2	73	96	1	287	37	18	16	26	1.92
1040070--1040100	10	3.1	10	95	0	53	25	29	3	41	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1040088--1040148	21	2.8	22	87	5	88	27	24	9	37	1.87
1040191--1040229	13	3.0	13	92	0	69	30	15	17	35	1.91
1041992--1042044	20	2.7	20	91	5	81	30	20	13	35	1.91
1042114--1042140	13	2.1	13	100	0	54	40	14	14	29	1.86
1042095--1042159	33	2.0	32	90	3	103	40	16	18	24	1.91
1042678--1042764	39	2.2	40	91	2	140	34	26	3	35	1.74
1042693--1042753	20	3.1	20	70	13	63	27	27	4	39	1.77
1044597--1044639	13	3.3	13	93	0	77	37	13	16	32	1.88
1047645--1048100	225	2.0	225	93	0	770	32	18	14	33	1.92
1051020--1051050	13	2.4	13	94	0	53	35	12	16	35	1.87
1050998--1051066	33	2.1	33	91	5	113	33	20	13	33	1.91
1051116--1051180	33	2.0	32	84	3	85	43	16	15	24	1.87
1051467--1051552	20	4.3	20	83	1	102	37	13	13	34	1.85
1051576--1051630	20	2.8	20	82	0	65	41	14	9	34	1.77
1051505--1051641	71	1.9	71	92	0	229	41	14	13	29	1.85
1053347--1053784	153	2.8	153	77	7	447	40	21	14	24	1.90
1053443--1053896	153	2.9	156	78	8	425	41	19	14	25	1.89
1053321--1053902	153	3.8	153	74	10	369	40	19	14	25	1.90
1055864--1055903	20	2.0	21	90	5	64	72	5	5	17	1.21
1055420--1056124	164	4.3	166	79	6	693	51	7	9	31	1.64
1057363--1057388	13	2.0	13	100	0	52	30	15	15	38	1.88
1057343--1057406	33	2.0	32	87	9	94	28	14	20	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1057448--1057500	20	2.6	21	82	8	65	28	15	16	39	1.89
1057488--1057512	13	1.9	13	100	0	50	36	16	16	32	1.90
1057522--1057560	20	2.0	19	95	5	69	30	10	23	35	1.88
1063672--1063705	17	2.0	17	100	0	68	35	0	0	64	0.94
1066984--1067008	13	1.9	13	100	0	50	36	16	16	32	1.90
1066966--1067031	33	2.0	33	93	0	114	36	18	16	28	1.93
1067709--1067766	28	2.1	28	96	0	107	29	17	3	50	1.62
1069544--1069582	13	3.0	13	96	0	69	35	15	17	30	1.91
1073478--1073533	21	2.8	20	71	13	51	26	10	7	55	1.60
1075878--1075902	13	1.9	13	100	0	50	36	16	16	32	1.90
1075860--1075925	33	2.0	33	93	0	114	36	18	16	28	1.93
1076268--1076293	13	2.0	13	100	0	52	30	15	15	38	1.88
1076248--1076311	33	2.0	32	87	9	94	28	14	20	37	1.91
1076353--1076405	20	2.6	21	82	8	65	28	15	16	39	1.89
1076393--1076417	13	1.9	13	100	0	50	36	16	16	32	1.90
1076427--1076465	20	2.0	19	95	5	69	30	10	23	35	1.88
1078298--1078336	21	1.9	20	94	5	69	35	15	12	35	1.86
1078373--1078444	19	3.7	19	81	7	99	36	12	18	33	1.88
1078857--1078909	19	2.7	20	91	2	90	37	11	11	39	1.77
1078931--1078955	13	1.9	13	100	0	50	32	16	16	36	1.90
1078964--1079092	52	2.5	52	96	0	231	37	17	16	28	1.92
1082661--1082685	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1082726--1082792	33	2.0	33	88	0	98	40	14	11	32	1.83
1082748--1082772	13	1.9	13	100	0	50	32	16	16	36	1.90
1085845--1085896	19	2.6	21	90	6	81	38	13	15	32	1.86
1085926--1085983	21	2.8	21	100	0	116	34	10	17	37	1.84
1085970--1085995	13	2.0	13	100	0	52	30	15	15	38	1.88
1088329--1088497	51	3.3	51	82	6	191	28	26	11	32	1.92
1088485--1088771	76	3.8	75	88	1	412	25	25	16	32	1.96
1088485--1088814	76	4.3	75	86	2	390	24	24	16	33	1.95
1088480--1088814	152	2.2	154	85	5	446	25	24	16	33	1.95
1088791--1088891	28	3.6	28	80	7	98	19	28	22	28	1.98

Tables:   1   2   3   4   5   6   7   8