genome.fa.s175.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold175
Parameters: 2 7 7 80 10 50 1000
Length:  1254584

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 923 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1088875--1089043	51	3.3	51	91	0	266	31	25	10	32	1.90
1088977--1089129	79	1.9	79	85	2	209	27	26	14	32	1.95
1091189--1091219	4	7.8	4	92	0	53	25	0	0	74	0.82
1101502--1101537	18	1.9	19	88	5	56	86	11	2	0	0.68
1102536--1102930	55	7.0	55	90	5	542	26	27	21	25	1.99
1102648--1102788	27	5.1	27	60	3	75	26	24	21	26	1.99
1102675--1102758	28	3.0	28	61	3	71	26	26	21	26	1.99
1102914--1102996	42	2.0	42	85	0	112	21	24	13	40	1.89
1103750--1103801	19	2.6	21	90	6	81	38	13	15	32	1.86
1103854--1103913	13	5.0	13	76	19	76	33	13	15	38	1.86
1103833--1103913	34	2.4	34	100	0	162	34	12	14	38	1.84
1105941--1106109	51	3.3	51	79	4	164	29	26	10	33	1.90
1106093--1106381	76	3.8	76	89	2	415	25	25	15	32	1.96
1106398--1106452	28	2.0	28	88	0	83	18	25	21	34	1.96
1106415--1106496	28	2.9	28	88	0	119	18	26	23	31	1.97
1106485--1106652	51	3.3	50	86	7	232	31	24	10	33	1.90
1107764--1107801	20	1.9	20	94	0	67	36	13	7	42	1.73
1109926--1109951	13	2.0	13	100	0	52	38	15	15	30	1.88
1112166--1112210	21	2.1	21	84	8	56	53	4	20	22	1.63
1116079--1116103	13	1.9	13	100	0	50	32	16	16	36	1.90
1116224--1116269	21	2.2	20	81	11	58	32	19	4	43	1.71
1118648--1118673	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1123549--1123622	18	4.2	18	70	3	51	59	17	8	14	1.59
1124723--1124766	15	3.1	14	78	9	54	56	4	0	38	1.20
1125773--1125871	45	2.2	45	96	0	180	33	30	4	32	1.76
1127059--1127084	12	2.2	12	100	0	52	38	0	7	53	1.30
1130088--1131193	373	3.0	372	88	5	1613	25	13	20	40	1.89
1133260--1133303	23	1.9	23	100	0	88	15	27	0	56	1.40
1141286--1141322	19	1.9	19	88	0	56	48	0	0	51	1.00
1146597--1146626	16	1.9	16	93	6	53	0	3	10	86	0.67
1148001--1148038	19	2.0	19	100	0	76	21	15	21	42	1.89
1164174--1164202	15	1.9	15	100	0	58	34	13	34	17	1.89
1166276--1166338	2	31.5	2	96	0	117	47	0	1	50	1.10
1166984--1167023	2	20.0	2	100	0	80	50	0	0	50	1.00
1167615--1167657	20	2.2	20	87	4	61	48	2	0	48	1.14
1168186--1168219	2	17.0	2	93	0	59	50	2	0	47	1.16
1168880--1168925	18	2.6	17	82	3	56	56	4	2	36	1.31
1170462--1170494	16	2.1	16	100	0	66	36	24	12	27	1.91
1175215--1175729	42	12.2	42	77	6	351	33	17	31	18	1.94
1175357--1175561	85	2.4	85	81	0	230	35	19	28	17	1.94
1177375--1177550	79	2.2	79	82	4	203	30	17	25	26	1.97
1177484--1177601	51	2.3	51	88	0	173	30	11	27	30	1.92
1177535--1178019	79	6.2	78	80	5	503	32	12	25	29	1.92
1177979--1178048	28	2.5	28	88	0	95	30	18	25	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1177899--1178100	106	1.9	107	85	7	286	30	14	25	28	1.95
1180406--1180566	50	3.2	49	85	2	214	39	14	18	27	1.90
1182160--1182185	13	2.0	13	100	0	52	30	15	15	38	1.88
1182140--1182203	32	2.0	33	87	3	94	29	14	17	39	1.88
1184733--1184770	13	2.9	13	100	0	76	36	15	15	31	1.90
1185452--1185477	13	2.0	13	100	0	52	38	15	15	30	1.88
1185434--1185497	32	2.0	33	90	3	103	42	15	14	28	1.86
1188514--1188544	15	2.1	15	93	0	53	48	16	22	12	1.80
1190600--1190637	13	2.9	13	96	0	67	34	18	15	31	1.92
1190749--1190794	21	2.2	20	81	11	58	32	19	4	43	1.71
1191904--1191929	13	2.0	13	100	0	52	38	15	15	30	1.88
1198989--1199014	13	2.0	13	100	0	52	38	15	15	30	1.88
1199076--1199130	21	2.7	19	71	13	56	47	14	12	25	1.80
1204722--1204747	13	2.0	13	100	0	52	38	15	15	30	1.88
1204703--1204767	32	2.0	33	87	3	96	41	16	13	27	1.87
1206957--1207012	21	2.6	22	75	13	64	55	7	14	23	1.63
1208802--1208832	15	2.1	15	93	0	53	48	16	22	12	1.80
1210889--1210926	13	2.9	13	96	0	67	34	18	15	31	1.92
1211038--1211083	21	2.2	20	81	11	58	32	19	4	43	1.71
1212193--1212218	13	2.0	13	100	0	52	38	15	15	30	1.88
1219278--1219303	13	2.0	13	100	0	52	38	15	15	30	1.88
1219365--1219419	21	2.7	19	71	13	56	47	14	12	25	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1225012--1225037	13	2.0	13	100	0	52	38	15	15	30	1.88
1224993--1225057	32	2.0	33	87	3	96	41	16	13	27	1.87
1227247--1227302	21	2.6	22	75	13	64	55	7	14	23	1.63
1231178--1231216	13	2.9	14	92	3	62	33	20	15	30	1.94
1231328--1231373	21	2.2	20	81	11	58	32	19	4	43	1.71
1232483--1232508	13	2.0	13	100	0	52	38	15	15	30	1.88
1232465--1232531	32	2.1	33	88	2	100	41	13	14	29	1.85
1239564--1239589	13	2.0	13	100	0	52	38	15	15	30	1.88
1239651--1239705	21	2.7	19	71	13	56	47	14	12	25	1.80
1245297--1245322	13	2.0	13	100	0	52	38	15	15	30	1.88
1245278--1245342	32	2.0	33	87	3	96	41	16	13	27	1.87
1247532--1247587	21	2.6	22	75	13	64	55	7	14	23	1.63
1251469--1251535	20	3.7	20	74	25	85	23	14	11	49	1.77
1251488--1251546	13	5.0	13	73	23	67	27	15	13	44	1.84
1251469--1251546	33	2.4	33	100	0	156	25	15	12	46	1.81
1254110--1254135	13	2.0	13	100	0	52	38	15	15	30	1.88
1254091--1254155	32	2.0	33	87	3	96	41	16	13	27	1.87

Tables:   1   2   3   4   5   6   7   8

The End!