genome.fa.s1822.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1822
Parameters: 2 7 7 80 10 50 1000
Length:  1013428

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 722 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430279--430385	53	2.0	53	100	0	214	36	16	18	28	1.93
435305--435423	42	2.8	42	92	0	193	8	46	2	42	1.47
435338--435413	12	6.9	11	75	15	52	9	48	2	39	1.49
435329--435414	24	3.8	24	72	17	85	10	45	2	41	1.51
435320--435390	18	3.6	18	69	20	52	9	43	2	43	1.52
436395--437688	647	2.0	645	97	0	2428	34	23	14	27	1.94
441925--442027	42	2.5	42	90	0	161	9	46	3	39	1.55
446919--446949	16	1.9	16	93	0	53	6	9	6	77	1.12
447867--448079	106	2.0	107	88	2	322	14	30	15	40	1.86
450682--450756	12	6.8	11	76	15	50	42	0	42	14	1.45
450701--450761	9	7.1	9	76	10	65	45	0	40	13	1.43
450682--450789	42	2.6	42	86	5	155	44	0	41	13	1.44
450682--450771	24	4.1	23	70	18	75	44	0	41	14	1.45
450746--450795	18	2.8	18	77	17	50	48	0	42	10	1.37
462575--462693	42	2.8	42	92	0	193	8	46	2	42	1.47
462608--462683	12	6.9	11	75	15	52	9	48	2	39	1.49
462599--462684	24	3.8	24	72	17	85	10	45	2	41	1.51
462590--462660	18	3.6	18	69	20	52	9	43	2	43	1.52
467961--468079	42	2.8	42	90	0	184	9	46	1	42	1.46
467994--468069	12	6.9	11	78	15	61	10	48	1	39	1.46
467989--468049	9	7.1	9	72	10	56	11	44	1	42	1.50
472195--472283	38	2.3	38	98	0	169	17	12	20	49	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481342--481422	42	1.9	42	85	5	110	9	43	1	45	1.45
483687--483763	31	2.5	31	72	4	77	28	18	19	33	1.95
483745--483929	67	2.8	65	79	6	185	22	15	27	34	1.94
483815--484114	31	9.5	31	73	6	253	21	19	29	30	1.98
484091--484198	37	2.9	38	78	13	118	23	16	24	36	1.94
484355--484458	55	1.9	55	84	4	138	36	15	19	28	1.92
484448--484533	25	3.5	26	75	13	83	37	9	17	36	1.82
484448--484548	25	4.2	23	75	12	78	36	9	17	35	1.83
484448--484529	13	6.8	12	76	16	71	37	8	17	36	1.80
485880--485948	34	2.0	34	91	5	113	20	17	13	49	1.79
486092--487468	683	2.0	690	95	1	2491	27	15	23	34	1.94
488401--488546	42	3.5	42	92	0	238	43	2	43	10	1.52
493843--493914	12	6.5	11	80	16	71	40	0	45	13	1.44
493863--493894	9	3.6	9	91	0	55	43	0	43	12	1.42
493866--493927	18	3.6	18	73	20	60	45	0	41	12	1.42
493833--493924	42	2.2	42	90	0	148	45	0	42	11	1.41
493872--493942	33	2.2	33	92	0	115	42	1	45	11	1.48
493890--493943	15	3.4	15	73	14	54	40	1	48	9	1.46
501818--501936	42	2.8	42	92	0	193	8	46	2	42	1.47
501851--501926	12	6.9	11	75	15	52	9	48	2	39	1.49
501842--501927	24	3.8	24	72	17	85	10	45	2	41	1.51
501833--501903	18	3.6	18	69	20	52	9	43	2	43	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502901--503323	212	2.0	212	98	0	819	43	16	18	20	1.87
510773--510826	27	2.0	27	85	3	74	22	12	33	31	1.92
511458--511532	23	3.3	23	86	0	105	25	29	17	28	1.97
511529--511695	82	2.0	82	94	0	289	26	31	11	29	1.92
518561--518753	80	2.5	77	81	9	219	28	17	26	27	1.98
518636--518933	80	3.7	79	72	10	232	30	16	25	27	1.96
518690--518989	160	1.9	158	79	6	338	31	16	26	27	1.96
518876--519226	79	4.4	79	87	1	400	31	15	26	26	1.96
519740--519808	31	2.2	31	77	7	77	15	23	30	30	1.96
520799--521151	168	2.1	164	82	7	403	27	10	9	52	1.67
521931--521970	12	3.5	11	83	12	53	80	0	20	0	0.72
521931--521970	11	3.4	13	80	19	52	80	0	20	0	0.72
534801--534862	21	3.0	21	93	6	101	37	19	9	33	1.84
534956--534981	13	2.0	13	100	0	52	30	15	15	38	1.88
534936--535002	33	2.0	33	88	0	98	25	14	16	43	1.86
535496--535529	18	1.9	17	88	5	50	85	8	2	2	0.80
537329--537671	52	6.5	53	68	20	173	29	25	12	32	1.92
537446--537515	27	2.5	28	80	15	83	27	32	18	21	1.97
537332--537726	213	1.9	213	85	3	562	28	26	13	31	1.93
537658--537731	28	2.6	29	79	10	82	22	32	18	25	1.97
539853--540066	78	2.7	78	78	7	195	32	28	11	27	1.91
540538--540664	43	3.0	43	83	0	146	20	30	18	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
540676--541705	42	24.0	41	74	8	443	22	28	18	31	1.97
540553--540779	115	2.0	115	83	0	283	21	30	16	31	1.96
540912--541454	212	2.6	211	82	3	610	23	26	17	32	1.97
541415--541524	57	1.9	57	90	3	177	19	30	20	29	1.97
541369--541568	99	2.0	99	85	1	267	19	30	20	30	1.97
541489--541709	85	2.6	86	75	10	229	21	30	17	30	1.96
542902--543002	48	2.1	49	83	1	123	29	7	14	47	1.73
544553--544801	131	1.9	132	90	0	401	31	12	13	42	1.81
544681--544949	149	1.8	148	87	6	400	33	13	13	39	1.83
546088--546487	166	2.4	165	83	4	450	30	10	10	48	1.71
546137--546492	165	2.1	165	83	4	448	29	10	10	49	1.71
546137--546556	165	2.5	164	80	7	415	27	11	11	49	1.73
547783--548031	79	3.2	77	75	11	222	32	12	26	29	1.92
547966--548082	51	2.3	51	89	0	171	34	11	23	29	1.91
552733--552779	24	2.0	24	91	0	76	42	4	44	8	1.54
552733--552770	12	3.2	12	78	14	51	39	5	50	5	1.48
557354--558191	423	2.0	414	96	3	1527	23	15	19	41	1.90
559112--559230	42	2.8	42	90	0	184	42	2	45	9	1.49
559121--559206	24	3.8	24	72	17	76	41	2	44	11	1.53
564218--564717	61	8.2	61	87	1	637	28	18	26	26	1.98
564218--564715	123	4.1	121	86	2	665	28	18	26	26	1.98
573782--573818	18	2.0	19	94	5	67	27	27	21	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
574911--574963	27	2.0	27	85	10	74	26	18	30	24	1.98
577210--577336	20	5.7	20	73	21	110	43	11	14	31	1.80
578037--578214	48	3.8	48	87	1	234	34	17	26	20	1.95
578156--578223	21	3.0	22	66	14	57	33	14	27	23	1.94
578037--578248	48	4.5	46	86	2	221	34	18	26	20	1.96
578371--578653	28	9.8	29	80	7	258	21	16	31	30	1.96
578369--578653	85	3.3	87	82	6	337	21	16	31	30	1.96
578655--578838	32	5.8	32	88	2	271	17	17	29	35	1.93
578655--578838	96	1.9	96	92	4	309	17	17	29	35	1.93
578830--578950	27	4.5	27	91	0	179	27	14	33	24	1.95
578830--578950	54	2.2	54	94	0	206	27	14	33	24	1.95
589449--589486	4	9.5	4	94	0	58	71	0	5	23	1.07
591531--591901	79	4.7	79	77	6	261	35	12	23	28	1.92
595110--595134	11	2.3	11	100	0	50	16	20	16	48	1.82
595579--595895	174	1.8	173	93	0	544	37	8	12	41	1.73
596225--596276	3	17.3	3	100	0	104	67	0	0	32	0.91
599156--599200	22	2.0	22	95	0	81	4	6	4	84	0.87
604947--604993	12	3.9	12	83	10	69	40	2	48	8	1.45
604983--605032	18	2.8	18	81	6	57	44	0	46	10	1.37
611507--611625	42	2.8	42	92	0	193	8	46	2	42	1.47
611540--611615	12	6.9	11	75	15	52	9	48	2	39	1.49
611531--611616	24	3.8	24	72	17	85	10	45	2	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611522--611592	18	3.6	18	69	20	52	9	43	2	43	1.52
614657--614775	42	2.8	42	89	0	184	42	2	46	9	1.49
615864--615902	15	2.6	14	80	11	51	82	2	12	2	0.89
616649--616724	12	6.9	11	75	15	52	39	2	48	9	1.49
616639--616757	42	2.8	42	93	0	202	42	1	46	9	1.46
616714--616763	18	2.8	18	81	6	57	44	2	46	8	1.44
623143--623186	22	1.9	24	90	9	74	79	4	11	4	1.02
623938--624013	12	6.9	11	75	15	52	39	2	48	9	1.49
623937--624022	24	3.8	24	72	17	85	41	2	45	10	1.51
623928--624046	42	2.8	42	90	0	184	43	2	45	8	1.47

Tables:   1   2   3   4   5   6   7