genome.fa.s191.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold191
Parameters: 2 7 7 80 10 50 1000
Length:  842153

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 628 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297994--298236	80	3.1	78	84	5	294	33	11	25	29	1.90
302988--303054	33	2.0	33	85	0	89	40	14	13	31	1.85
303010--303034	13	1.9	13	100	0	50	32	16	16	36	1.90
304008--304081	32	2.3	32	97	0	139	27	22	18	31	1.98
304142--304208	33	2.0	33	88	0	98	40	14	11	32	1.83
304164--304188	13	1.9	13	100	0	50	32	16	16	36	1.90
305303--305361	21	2.8	22	82	12	63	32	16	13	37	1.88
308487--308705	79	2.8	78	86	6	298	33	14	24	28	1.94
308639--308807	51	3.3	50	85	3	221	32	13	24	30	1.93
308747--308989	79	3.1	77	80	9	242	31	13	26	27	1.94
308949--309017	28	2.5	27	90	9	104	27	14	30	27	1.95
309006--309120	50	2.3	51	81	6	135	31	12	26	30	1.92
309134--309250	51	2.3	51	83	2	146	30	13	26	29	1.94
308995--309329	130	2.6	130	86	2	469	32	12	25	28	1.93
309182--309389	79	2.6	78	88	3	290	33	12	24	29	1.92
311800--311876	20	3.8	20	91	0	127	45	14	14	25	1.82
312544--312715	42	4.0	43	75	10	145	43	12	24	19	1.85
312692--312763	37	1.9	37	88	0	108	43	13	33	9	1.77
312742--313291	61	9.1	61	84	5	663	29	18	27	25	1.98
312742--313312	123	4.8	122	83	6	695	28	18	27	25	1.98
312742--313291	184	3.0	182	83	6	713	29	18	27	25	1.98
315932--315978	21	2.3	21	76	23	55	42	4	19	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316099--316124	13	2.0	13	100	0	52	38	15	15	30	1.88
318196--318233	15	2.5	15	91	0	58	13	21	15	50	1.78
320037--320081	21	2.1	21	84	8	56	22	20	4	53	1.63
322297--322322	13	2.0	13	100	0	52	30	15	15	38	1.88
323181--323222	16	2.5	16	84	7	57	0	2	9	88	0.61
333512--333546	16	2.2	16	90	10	54	77	14	0	8	0.99
337429--337557	52	2.5	52	93	0	213	30	17	17	34	1.93
337599--337663	19	3.8	18	73	24	68	38	15	13	32	1.87
337594--337661	32	2.1	32	94	0	118	36	16	13	33	1.87
337618--337642	13	1.9	13	100	0	50	32	16	16	36	1.90
338301--338719	52	7.6	55	77	10	252	35	14	25	25	1.93
338328--339270	49	19.1	52	75	15	389	33	16	24	25	1.96
338399--338499	53	1.9	52	85	2	139	33	15	23	26	1.95
338438--338564	67	1.9	68	83	1	166	37	11	25	25	1.90
338258--338719	227	2.0	227	85	4	630	36	13	25	24	1.92
338621--339270	92	7.0	92	93	1	1068	31	17	24	26	1.97
339271--339438	32	5.1	32	84	4	219	22	17	32	28	1.96
339472--339756	32	9.1	32	81	11	258	32	15	29	22	1.95
339512--339756	62	4.0	61	83	7	257	32	16	28	22	1.96
342867--342995	52	2.5	52	96	0	231	29	17	17	34	1.94
342867--343015	52	2.9	52	85	7	205	30	17	18	33	1.94
343004--343028	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343742--343875	54	2.5	52	74	2	142	33	15	25	25	1.95
346008--346032	13	1.9	13	100	0	50	36	16	16	32	1.90
346075--346170	19	5.7	18	67	28	68	35	16	11	36	1.85
346070--346170	32	3.1	32	91	1	166	35	16	10	36	1.84
346094--346150	13	3.9	13	72	24	51	33	15	12	38	1.85
347726--348027	79	3.8	76	78	8	270	34	12	24	28	1.92
347807--348233	208	2.0	209	80	5	463	34	12	23	28	1.92
348012--348261	79	3.2	78	75	7	209	33	14	23	28	1.94
348222--348292	28	2.5	28	81	4	81	28	19	28	23	1.99
348274--348389	51	2.3	50	88	7	171	30	8	28	32	1.87
348266--348519	130	2.0	129	88	2	384	31	11	27	29	1.91
348402--348571	51	3.4	51	87	1	234	31	14	27	27	1.95
348272--348631	180	2.0	181	83	3	449	32	11	25	30	1.91
350719--350748	13	2.3	13	94	0	51	43	13	13	30	1.82
352235--352289	20	2.8	20	80	0	65	34	10	14	40	1.81
352306--352453	20	6.8	20	70	15	107	29	15	12	42	1.83
352224--352362	71	2.0	71	94	0	242	30	15	12	42	1.83
352274--352451	91	2.0	91	94	2	313	29	16	11	42	1.84
352329--352501	71	2.4	70	81	7	206	30	16	13	40	1.86
360975--361820	27	30.9	27	85	5	950	26	32	14	27	1.95
361528--362292	28	27.2	28	82	6	618	29	30	14	24	1.95
361528--362292	113	6.8	113	82	5	669	29	30	14	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363158--363374	20	9.8	20	66	21	78	32	15	11	40	1.84
363148--363356	71	3.0	71	88	2	305	31	16	11	40	1.84
363300--363375	20	3.9	19	84	3	89	34	17	13	35	1.88
368859--368903	21	2.1	21	84	8	56	53	4	20	22	1.63
370701--370730	15	2.0	15	93	0	51	50	13	23	13	1.77
372809--372834	13	2.0	13	100	0	52	30	15	15	38	1.88
372955--373000	21	2.2	20	81	11	58	32	19	4	43	1.71
375367--375418	19	2.7	20	84	6	70	40	17	13	28	1.87
379399--379539	54	2.5	55	75	11	126	34	29	17	19	1.94
379465--379539	28	2.7	28	82	0	105	34	29	18	17	1.94
379465--379706	28	8.7	28	70	11	104	30	28	18	21	1.97
379394--379698	110	2.8	110	78	4	299	31	28	17	21	1.96
379634--379727	28	3.4	28	83	0	107	26	28	19	25	1.98
379680--379734	28	2.0	28	85	0	74	27	30	16	25	1.96
379687--379811	56	2.2	56	80	5	146	34	25	16	24	1.95
380711--380759	11	4.4	11	84	5	53	77	0	22	0	0.77
380731--380800	24	3.0	23	70	24	65	78	2	18	0	0.87
383242--383395	78	2.0	77	84	6	204	33	16	17	32	1.92
386110--386146	7	5.1	7	90	6	56	56	0	0	43	0.99
386076--386127	25	2.0	26	85	3	70	57	0	0	42	0.98
386076--386130	26	2.1	26	83	6	67	56	0	0	43	0.99
386109--386141	15	2.2	15	100	0	66	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391895--391944	21	2.3	21	80	10	57	56	4	18	22	1.58
393742--393772	15	2.1	15	93	0	53	48	16	22	12	1.80
395856--395893	13	2.9	13	96	0	67	34	18	15	31	1.92
396005--396050	21	2.2	20	81	11	58	32	19	4	43	1.71
398420--398484	21	3.6	19	73	26	70	44	15	12	27	1.82
398438--398463	13	2.0	13	100	0	52	38	15	15	30	1.88
398420--398484	34	2.0	33	93	6	114	44	15	12	27	1.82
401922--401956	18	1.9	18	88	0	52	25	0	0	74	0.82
402614--402655	13	3.2	13	83	6	57	33	2	0	64	1.07
402617--402663	14	3.5	13	78	18	51	36	2	2	59	1.21
403093--403156	5	13.2	5	73	18	55	53	0	0	46	1.00
403100--403162	29	2.2	28	86	10	85	50	0	0	49	1.00
404203--404242	18	2.2	18	95	0	71	42	7	22	27	1.80
404483--404525	22	2.0	22	85	0	59	58	4	0	37	1.19
404716--404791	11	6.7	11	73	11	55	59	0	1	39	1.06
404739--404777	20	1.9	21	89	5	62	71	0	0	28	0.86
404763--404864	27	3.5	28	74	15	93	56	0	0	42	1.05
404763--404863	30	3.5	29	73	17	86	57	0	0	41	1.05
405508--405539	13	2.4	14	85	15	50	62	0	0	37	0.95
405481--405548	19	3.3	21	70	15	61	52	1	0	45	1.09
406176--406218	18	2.4	17	81	11	50	62	2	0	34	1.08
406359--406406	21	2.2	23	85	14	66	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406529--406598	25	3.0	22	79	10	68	60	1	0	38	1.06
406584--406619	18	1.9	19	88	5	56	58	2	0	38	1.13
407028--407082	19	2.8	21	79	15	64	27	0	5	67	1.12
407274--407308	11	3.1	11	91	4	52	48	0	5	45	1.26
408019--408054	18	2.1	17	94	5	63	38	0	5	55	1.23
410055--410092	3	12.7	3	94	0	67	28	0	2	68	1.03
411778--411824	19	2.6	18	83	10	60	48	0	0	51	1.00
411815--411857	18	2.5	18	88	7	63	32	0	0	67	0.91
411815--411863	18	2.9	16	82	11	62	30	0	2	67	1.02
412453--412491	13	3.0	13	84	0	51	84	2	0	12	0.72

Tables:   1   2   3   4   5   6