genome.fa.s191.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold191
Parameters: 2 7 7 80 10 50 1000
Length:  842153

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 628 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413070--413125	11	4.7	11	77	18	51	42	0	3	53	1.18
414610--414685	31	2.5	31	88	0	116	53	13	3	28	1.57
418063--418090	2	14.0	2	100	0	56	50	0	0	50	1.00
418366--418406	2	20.5	2	100	0	82	48	0	0	51	1.00
418962--418989	2	14.0	2	100	0	56	50	0	0	50	1.00
419019--419081	31	2.0	31	90	0	99	14	7	20	57	1.62
420022--420061	15	2.6	16	80	11	57	35	10	40	15	1.80
422696--423386	79	8.7	79	85	0	857	27	25	14	32	1.94
424783--424807	13	1.9	13	100	0	50	36	16	16	32	1.90
424763--424829	33	2.0	33	88	0	98	32	11	14	40	1.83
424870--424894	13	1.9	13	100	0	50	32	16	16	36	1.90
424883--425031	52	2.9	51	91	4	244	32	19	17	30	1.95
429748--429822	20	3.8	20	78	0	87	34	13	12	40	1.81
429748--429825	40	2.0	39	87	2	111	34	12	12	39	1.82
430735--430789	22	2.5	22	96	0	101	20	10	9	60	1.57
443805--443859	12	4.6	12	84	8	67	85	7	3	3	0.82
443806--443859	13	4.2	13	83	4	65	87	5	3	3	0.76
443806--443849	1	44.0	1	81	0	52	90	4	2	2	0.58
445079--446087	28	35.0	28	85	7	1199	27	32	18	21	1.97
445077--446041	145	6.7	140	87	6	1276	27	32	18	21	1.96
446650--446700	20	2.5	20	83	0	66	35	11	13	39	1.82
447604--447658	22	2.5	22	100	0	110	18	10	9	61	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447604--447665	22	2.9	21	90	4	63	20	11	9	58	1.61
453495--453544	21	2.4	21	96	0	91	40	10	36	14	1.79
457680--457705	13	2.0	13	100	0	52	30	15	15	38	1.88
457744--457819	21	3.7	21	82	3	109	28	18	11	40	1.86
457764--457837	20	3.7	20	81	3	103	31	20	13	35	1.91
457744--457837	41	2.3	41	100	0	188	29	19	12	38	1.89
460287--460325	13	3.0	13	96	0	69	35	15	17	30	1.91
460311--460389	20	3.7	20	78	15	77	44	15	15	25	1.85
464238--464282	21	2.1	21	84	8	56	22	20	4	53	1.63
466496--466521	13	2.0	13	100	0	52	30	15	15	38	1.88
466560--466676	21	5.7	21	79	4	148	29	18	11	40	1.87
466580--466694	20	5.7	20	79	4	140	30	20	13	36	1.90
466560--466694	41	3.3	41	100	0	270	29	19	12	38	1.88
469809--469881	14	5.3	13	74	11	65	82	5	10	1	0.90
470841--471272	61	7.0	61	84	4	512	26	26	17	29	1.98
471272--471405	42	3.2	41	82	9	137	20	27	13	38	1.90
471381--471473	34	2.7	34	86	4	134	19	24	16	39	1.91
474483--474746	79	3.4	79	86	1	377	26	26	15	31	1.95
474701--474773	28	2.6	28	93	0	119	21	27	23	27	1.99
474625--474853	107	2.1	107	88	3	336	25	27	17	29	1.97
474729--475229	79	6.3	79	85	3	591	28	23	14	33	1.94
474544--474922	186	2.0	184	87	4	548	27	25	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474729--475183	157	2.9	157	88	2	637	29	23	14	32	1.94
474487--475007	264	2.0	263	87	3	753	27	25	15	31	1.96
479096--479136	20	2.0	20	85	0	55	39	14	12	34	1.84
479196--479260	33	2.0	33	87	0	94	30	18	15	35	1.92
479178--479278	53	1.9	53	83	4	132	33	17	14	33	1.91
479194--479278	20	4.6	20	72	19	76	31	17	15	35	1.91
479331--479406	21	3.7	20	78	18	75	40	13	11	34	1.81
479347--479403	20	2.8	19	84	12	62	40	14	14	31	1.85
485290--485397	48	2.2	49	85	1	137	30	15	17	36	1.91
487219--487258	16	2.5	16	91	0	62	35	5	12	47	1.63
487937--488002	32	2.0	33	88	2	98	30	18	13	37	1.89
489066--489290	58	3.9	58	76	5	168	48	18	8	25	1.76
492727--493229	155	3.3	153	81	4	546	37	20	18	24	1.94
493518--494462	162	5.8	161	88	3	1321	41	13	11	33	1.81
493518--494462	323	2.9	322	87	3	1355	41	13	11	33	1.81
495252--495295	11	4.0	11	80	19	56	6	22	0	70	1.11
495259--495301	21	2.0	21	86	8	61	4	25	0	69	1.07
495947--496391	164	2.7	164	82	7	490	52	7	10	29	1.63
498899--498944	22	2.1	22	100	0	92	39	13	13	34	1.83
499469--499493	13	1.9	13	100	0	50	32	16	16	36	1.90
499449--499513	33	2.0	33	85	11	89	33	18	13	33	1.90
499564--499628	32	2.0	33	87	3	96	41	15	13	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499979--500031	18	2.9	18	81	13	65	50	5	0	43	1.25
501389--501435	23	1.9	24	87	12	69	48	6	19	25	1.72
501936--501960	13	1.9	13	100	0	50	36	16	16	32	1.90
506864--507454	298	2.0	296	84	2	763	35	18	12	33	1.89
508827--509201	161	2.3	162	81	5	420	29	10	9	50	1.67
509177--509221	21	2.1	21	95	0	81	33	2	0	64	1.06
509218--509518	164	1.8	165	81	10	375	27	11	8	53	1.65
510016--510064	24	2.0	24	88	0	71	75	0	22	2	0.90
510028--510065	20	1.9	20	88	0	58	78	0	21	0	0.74
510117--510144	11	2.5	11	100	0	56	7	17	7	67	1.37
555621--555690	12	5.8	13	69	16	51	32	1	0	65	1.01
555622--555685	24	2.7	24	77	15	71	31	1	0	67	1.00
555756--555799	21	2.0	21	83	12	54	34	0	0	65	0.93
558380--558405	11	2.4	11	100	0	52	30	0	0	69	0.89
564185--564223	3	13.0	3	94	0	69	64	0	2	33	1.08
565740--565765	2	13.0	2	100	0	52	50	0	0	50	1.00
571148--571189	15	2.6	16	77	11	50	47	0	0	52	1.00
571163--571222	27	2.2	27	77	16	70	48	0	0	51	1.00
571979--572013	2	17.5	2	93	0	61	51	0	0	48	1.00
572603--572634	2	16.0	2	100	0	64	50	0	0	50	1.00
577674--577706	2	16.5	2	100	0	66	51	0	0	48	1.00
583129--583155	12	2.2	12	100	0	54	59	7	7	25	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585088--585119	2	16.0	2	100	0	64	50	0	0	50	1.00
586302--586387	43	2.0	43	90	0	136	32	4	22	40	1.74
593048--593242	107	1.8	108	88	3	304	34	17	6	41	1.76
593048--593257	108	2.0	107	86	2	296	34	19	6	39	1.78
599007--599059	20	2.7	20	100	0	106	26	15	15	43	1.85
612139--612171	4	8.5	4	90	6	50	81	18	0	0	0.68
612136--612171	11	3.2	11	88	7	54	83	16	0	0	0.65
613444--613642	29	6.9	29	85	5	242	28	31	18	21	1.97
613435--613682	57	4.3	58	81	4	274	30	32	16	20	1.95
613435--613682	29	8.7	28	79	7	218	30	32	16	20	1.95
613722--613789	21	3.2	21	63	19	50	25	25	17	32	1.97
613704--614053	43	7.9	43	83	9	425	25	24	18	32	1.97
613691--614053	135	2.7	135	92	1	588	24	24	18	32	1.97
613855--614111	92	2.9	91	87	3	353	24	21	18	35	1.96
619693--619728	17	2.1	17	89	0	54	83	0	16	0	0.65
620092--620122	2	15.5	2	93	0	53	45	0	3	51	1.17
626146--626217	36	2.2	35	79	20	84	69	11	12	6	1.36
626491--626520	15	2.0	15	100	0	60	86	13	0	0	0.57
627572--628390	27	29.9	27	91	2	1253	23	33	14	29	1.93
627572--628390	55	15.0	54	92	2	1253	23	33	14	29	1.93
627572--628390	82	10.0	81	91	2	1253	23	33	14	29	1.93
628376--628818	32	13.8	32	93	0	735	31	33	18	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
630063--630097	12	2.7	13	91	8	54	85	0	14	0	0.59
635268--635294	13	2.1	13	100	0	54	40	14	14	29	1.86
635332--635389	13	4.0	13	74	23	53	32	17	15	34	1.91
635333--635398	32	2.1	32	94	0	114	34	16	15	33	1.90
636108--636829	49	15.6	48	69	13	286	30	18	25	25	1.98
636340--637049	49	15.9	48	71	15	413	29	18	25	26	1.98
636203--636542	136	2.5	136	88	0	484	29	18	25	26	1.98
636253--636773	223	2.3	224	85	1	715	29	18	25	26	1.98
636389--636868	87	5.4	88	72	15	319	29	18	24	26	1.98
636659--636992	39	7.9	39	73	15	202	27	18	26	27	1.98

Tables:   1   2   3   4   5   6