genome.fa.s207.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold207
Parameters: 2 7 7 80 10 50 1000
Length:  1047254

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 713 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
313871--313904	2	17.0	2	93	0	59	50	2	0	47	1.16
319170--319209	21	1.9	21	90	10	64	40	0	0	60	0.97
326258--326295	16	2.6	15	84	15	53	57	0	0	42	0.98
326573--326609	19	1.9	19	88	0	56	59	2	0	37	1.12
326706--326750	14	3.4	14	78	9	58	44	0	2	53	1.13
326734--326819	39	2.3	37	84	6	111	39	4	5	50	1.47
326857--326904	17	2.8	17	93	3	78	41	0	2	56	1.11
327025--327050	13	2.0	13	100	0	52	61	0	0	38	0.96
326991--327095	51	2.1	51	81	3	122	55	4	0	39	1.28
327149--327193	18	2.5	19	85	7	58	40	2	0	57	1.11
329487--329520	15	2.3	15	90	10	52	17	11	17	52	1.73
330514--330682	77	2.2	76	88	3	241	29	13	19	37	1.89
330558--330824	36	7.4	34	75	12	171	27	11	18	41	1.86
330615--330824	36	5.9	36	82	3	205	25	12	19	42	1.86
334609--334667	28	2.1	29	87	6	86	30	8	8	52	1.61
335944--335968	13	1.9	13	100	0	50	52	0	0	48	1.00
336068--336103	15	2.3	16	90	4	56	50	2	0	47	1.15
342696--342741	24	1.9	24	100	0	92	28	13	19	39	1.89
344620--344799	82	2.2	82	88	1	261	30	15	18	36	1.91
347522--347546	8	3.1	8	100	0	50	84	0	0	16	0.63
347603--347891	138	2.1	138	90	0	454	50	13	21	14	1.77
354042--354078	12	3.2	12	88	7	58	72	0	5	21	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355560--355592	14	2.4	14	90	10	50	18	0	3	78	0.87
358597--358730	51	2.7	50	89	1	196	43	13	14	28	1.84
364125--364173	6	8.0	6	93	2	71	36	0	63	0	0.95
364826--364877	15	3.6	14	75	15	52	51	0	0	48	1.00
364823--364919	28	3.2	30	84	11	101	45	0	0	54	0.99
364866--364913	8	5.8	9	78	14	50	45	0	0	54	0.99
368412--368442	2	15.0	2	93	6	53	48	3	0	48	1.17
368893--368930	20	1.9	20	84	10	51	55	0	2	42	1.14
370014--370039	13	2.0	13	100	0	52	30	15	15	38	1.88
371899--372224	163	2.0	163	100	0	652	41	9	18	30	1.82
374683--374734	20	2.5	21	84	3	70	34	11	13	40	1.81
377705--377739	2	17.5	2	88	11	54	51	2	0	45	1.16
377990--378053	32	2.0	31	90	3	101	50	1	6	42	1.37
378162--378212	24	2.3	23	80	19	63	45	0	0	54	0.99
378613--378661	22	2.2	22	85	7	64	71	0	16	12	1.14
380314--380348	2	17.5	2	100	0	70	51	0	0	48	1.00
386819--386929	51	2.2	51	90	1	168	27	16	14	41	1.87
390076--390103	13	2.2	13	100	0	56	39	17	14	28	1.89
390148--390231	13	5.5	13	71	28	60	35	17	13	33	1.89
390156--390252	19	5.8	18	72	27	97	37	17	12	32	1.87
390148--390250	32	3.2	32	98	0	197	35	18	12	33	1.89
392819--392855	3	12.3	3	94	0	56	37	0	35	27	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393043--393102	24	2.5	24	91	0	93	56	6	23	13	1.60
396330--396400	20	3.6	19	90	5	99	30	15	16	36	1.90
396389--396413	13	1.9	13	100	0	50	32	20	16	32	1.94
404486--404528	21	2.0	22	86	4	61	34	4	20	39	1.74
405107--405178	20	3.7	19	87	5	99	31	18	15	34	1.92
405167--405191	13	1.9	13	100	0	50	36	16	16	32	1.90
409914--409938	13	1.9	13	100	0	50	24	20	16	40	1.91
410009--410272	125	2.1	125	97	0	492	34	14	16	34	1.89
410374--411513	572	2.0	569	84	5	1471	29	16	17	36	1.92
413405--413557	79	1.9	81	83	2	202	32	29	9	28	1.89
413516--413583	28	2.4	28	90	4	102	32	30	11	25	1.91
413464--413664	109	1.9	109	85	2	280	29	27	11	30	1.92
413543--413728	81	2.3	79	87	3	257	29	24	12	33	1.92
413543--413772	79	2.9	78	84	6	266	31	22	10	34	1.89
419020--419096	11	6.5	12	73	20	56	64	1	2	31	1.15
419027--419079	18	3.0	18	71	13	56	67	1	0	30	1.01
419281--419325	16	2.6	17	82	6	56	20	20	13	46	1.83
419213--419343	60	2.2	59	83	8	174	22	19	12	46	1.82
419917--419958	22	1.9	22	85	9	59	71	11	11	4	1.29
419878--419955	38	2.0	39	85	7	106	74	6	12	6	1.21
426176--426580	90	4.5	89	85	3	465	29	24	16	30	1.96
426176--426580	180	2.3	179	88	1	587	29	24	16	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
426726--426927	47	4.4	47	80	6	218	21	21	16	39	1.92
427039--428107	42	25.4	42	73	9	517	17	28	18	36	1.93
427029--427910	295	3.0	293	81	4	968	18	28	17	36	1.93
427039--428012	126	7.7	126	73	5	579	17	28	17	36	1.93
427029--428107	84	12.8	84	76	6	585	17	28	17	36	1.93
428642--428697	11	4.9	11	74	22	53	73	1	0	25	0.93
428640--428694	27	2.2	26	84	15	71	74	1	0	23	0.91
429117--429192	25	3.1	25	72	9	75	56	9	21	13	1.64
429485--429544	25	2.6	23	75	12	59	75	5	16	3	1.12
429524--429564	15	2.8	15	81	3	57	73	9	12	4	1.24
429619--429664	21	2.1	22	92	8	76	60	23	10	4	1.47
429652--429739	25	3.2	31	61	29	79	57	18	13	10	1.63
429668--429758	25	3.6	25	70	16	87	59	18	13	8	1.59
429652--429764	52	2.2	52	95	0	208	58	19	12	9	1.61
429683--429768	25	3.2	28	67	12	81	60	20	10	8	1.55
429652--429789	52	2.7	52	86	4	145	58	19	13	7	1.60
438057--438111	20	2.8	20	80	0	65	36	14	7	41	1.74
438865--439002	51	2.6	53	70	6	129	25	21	18	35	1.95
443484--443538	20	2.7	21	85	2	67	23	14	14	47	1.81
443505--443641	51	2.7	51	88	2	186	27	16	14	41	1.87
445986--446386	79	5.1	79	79	7	391	28	23	12	35	1.91
445986--446377	158	2.5	157	81	5	448	29	23	12	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459730--460129	61	6.6	61	79	6	350	26	25	17	30	1.97
459732--460114	120	3.2	120	80	3	396	27	24	18	29	1.98
460065--460216	70	2.2	70	88	3	227	26	26	15	30	1.96
460734--460758	13	1.9	13	100	0	50	40	12	16	32	1.84
460850--460984	50	2.7	51	84	2	173	25	14	14	45	1.84
463341--463726	79	4.9	78	80	5	402	27	20	13	37	1.91
465841--465901	22	2.7	23	82	10	81	19	1	0	78	0.83
465839--465891	15	3.3	15	85	12	70	18	0	0	81	0.70
466751--466800	13	3.8	13	80	17	50	0	24	2	74	0.93
467399--467713	165	1.9	165	83	3	411	48	7	12	30	1.69
474916--474997	38	2.2	38	100	0	164	39	24	9	26	1.86
476265--476316	20	2.6	20	96	0	95	30	9	19	40	1.83
476459--476484	13	2.0	13	100	0	52	38	15	15	30	1.88
476441--476505	32	2.0	32	87	6	94	43	15	13	27	1.85
477385--477439	19	2.8	20	88	5	76	34	14	18	32	1.91
483685--483723	13	3.0	13	84	0	60	33	17	12	35	1.88
485566--485657	43	2.1	44	97	2	177	34	2	29	33	1.70
485577--485652	22	3.5	22	68	10	75	38	1	35	25	1.64
486199--486225	13	2.1	13	100	0	54	29	14	14	40	1.86
486211--486266	19	2.8	21	86	8	80	33	14	17	33	1.90
486295--486362	33	2.0	34	86	8	95	33	14	17	33	1.91
486232--486425	97	2.0	97	96	0	361	32	17	18	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486393--486445	20	2.7	19	88	11	72	37	13	18	30	1.89
494939--494963	13	1.9	13	100	0	50	36	16	16	32	1.90
495054--495078	13	1.9	13	100	0	50	36	16	16	32	1.90
495694--495759	32	2.1	32	97	0	123	28	21	3	46	1.66
497536--497560	13	1.9	13	100	0	50	36	16	16	32	1.90
503695--503719	13	1.9	13	100	0	50	36	16	16	32	1.90
503810--503834	13	1.9	13	100	0	50	36	16	16	32	1.90
503792--503855	33	1.9	32	84	12	85	31	17	18	32	1.94
504075--504134	21	2.8	21	92	2	93	30	6	10	53	1.60
514151--514180	13	2.3	13	94	0	51	33	13	13	40	1.83

Tables:   1   2   3   4   5   6