genome.fa.s207.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold207
Parameters: 2 7 7 80 10 50 1000
Length:  1047254

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 713 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514352--514420	32	2.1	33	97	2	131	34	18	11	34	1.87
514376--514400	13	1.9	13	100	0	50	32	16	16	36	1.90
514458--514573	52	2.2	52	92	3	189	28	17	18	35	1.94
514474--514593	52	2.3	52	88	2	170	30	17	20	32	1.95
514582--514606	13	1.9	13	100	0	50	36	16	16	32	1.90
514649--514746	19	5.8	18	69	28	81	36	16	12	34	1.86
514668--514724	13	3.9	13	72	24	51	33	15	14	36	1.88
514648--514744	32	3.0	32	93	1	167	35	16	12	36	1.86
515067--515114	20	2.5	20	86	10	64	25	14	16	43	1.86
515184--515214	13	2.4	13	94	0	53	32	19	9	38	1.84
522154--522209	19	2.8	20	81	8	69	37	17	12	32	1.88
524644--524669	13	2.0	13	100	0	52	30	15	15	38	1.88
524624--524687	32	2.0	33	90	3	103	28	14	15	42	1.86
527236--527273	13	2.9	13	96	0	67	34	15	18	31	1.92
529317--529347	15	2.1	15	93	0	53	12	22	16	48	1.80
532780--532831	19	2.7	20	87	6	79	28	13	15	42	1.85
534375--534445	20	3.5	20	74	14	67	32	22	14	30	1.93
535526--536237	52	13.8	51	72	9	183	35	21	18	24	1.95
535532--536268	51	14.3	52	76	4	411	35	21	18	24	1.95
541387--541436	21	2.5	21	80	6	59	36	28	12	24	1.91
541772--541815	19	2.5	17	85	10	54	22	18	9	50	1.75
541781--541819	19	2.1	19	100	0	78	20	23	15	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544098--544137	20	2.0	20	90	0	62	50	5	15	30	1.65
546478--547406	79	11.8	79	77	6	690	28	23	12	36	1.91
546477--547397	158	5.9	157	78	5	794	28	23	12	36	1.90
546477--547397	237	3.9	236	80	5	873	28	23	12	36	1.90
557341--557383	3	14.3	3	90	0	68	30	30	0	39	1.57
559093--559117	13	1.9	13	100	0	50	36	16	16	32	1.90
559235--559298	22	3.0	20	80	14	74	37	10	4	46	1.60
559237--559279	23	2.0	22	90	9	70	37	9	6	46	1.63
560839--560891	17	3.4	16	87	7	65	11	0	5	83	0.81
561564--561789	114	2.0	114	95	0	407	35	24	13	26	1.92
564337--564381	4	11.0	4	90	4	72	28	0	22	48	1.50
569240--569840	79	7.6	79	85	4	766	33	13	25	27	1.93
569243--569840	237	2.5	236	91	3	959	33	13	25	27	1.93
569776--569957	51	3.6	50	88	3	256	31	12	26	29	1.92
572312--572337	13	2.0	13	100	0	52	38	15	15	30	1.88
572392--572484	19	5.5	19	67	27	75	37	19	13	29	1.90
572382--572483	32	3.2	32	98	0	195	36	18	14	30	1.91
574220--574264	23	2.0	23	86	0	63	11	13	4	71	1.29
574443--574493	24	2.1	24	85	7	68	66	9	1	21	1.31
574443--574493	13	4.2	12	81	16	61	66	9	1	21	1.31
576811--576851	20	2.0	21	95	4	75	34	9	14	41	1.79
576886--576949	32	2.0	33	90	3	103	29	12	14	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577001--577056	20	2.8	20	89	5	78	28	17	16	37	1.91
579544--579581	16	2.3	17	86	9	60	31	31	2	34	1.72
583885--584772	442	2.0	442	99	0	1749	32	17	15	33	1.92
592032--592136	28	3.8	27	76	5	84	20	8	9	61	1.52
595787--595906	51	2.4	50	81	2	123	35	10	22	30	1.89
595919--596031	51	2.2	50	81	9	131	30	12	28	29	1.93
595968--596149	79	2.3	79	84	4	226	32	13	24	28	1.94
595872--596118	130	2.0	121	79	10	257	32	13	25	28	1.93
598482--598512	13	2.4	13	94	0	53	38	12	16	32	1.86
598463--598530	33	2.1	33	91	0	109	42	11	16	29	1.83
599264--599418	42	3.6	42	80	6	184	38	14	25	21	1.91
599394--599572	61	2.9	62	84	4	247	29	19	25	25	1.98
599394--599597	61	3.5	58	80	8	191	29	19	24	25	1.98
599519--599784	94	2.8	94	88	0	397	25	18	28	27	1.98
599707--599890	55	3.4	54	82	2	219	23	21	26	28	1.99
599970--600164	55	3.4	55	86	7	257	26	19	26	28	1.99
599906--600164	116	2.2	112	84	8	315	27	18	26	27	1.98
613386--613602	51	4.3	50	77	10	212	32	10	25	31	1.90
613378--613602	99	2.2	99	83	6	267	33	10	24	31	1.89
613539--613711	79	2.2	79	90	0	265	30	15	27	27	1.96
616007--616100	20	4.7	20	81	5	93	41	13	17	27	1.87
616116--616142	13	2.1	13	100	0	54	40	7	14	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616129--616183	20	2.8	20	94	0	92	43	12	16	27	1.84
619577--619650	20	3.6	20	75	14	53	32	14	12	40	1.83
621636--621679	23	1.9	23	81	9	54	36	18	9	36	1.82
622340--622384	20	2.1	22	88	8	67	35	8	6	48	1.61
622599--622746	73	2.0	73	96	0	269	33	11	10	43	1.76
623078--623141	31	2.1	31	96	0	119	39	20	0	40	1.52
625386--625432	25	1.9	24	87	12	69	61	4	8	25	1.43
625383--625439	24	2.4	24	82	11	73	59	7	7	26	1.49
629154--629235	28	2.9	28	80	7	96	26	17	31	24	1.97
629218--629388	51	3.3	51	79	4	198	32	11	26	29	1.92
629371--629446	27	2.8	28	88	6	102	21	21	34	23	1.97
631913--631938	13	2.0	13	100	0	52	38	15	15	30	1.88
631892--631958	33	2.0	33	88	0	98	43	16	14	25	1.86
631978--632045	19	3.9	18	76	23	83	38	14	11	35	1.83
632000--632024	13	1.9	13	100	0	50	32	16	16	36	1.90
631981--632043	32	2.0	32	96	0	117	36	15	12	34	1.86
632676--633584	55	16.4	55	89	4	1294	21	20	30	28	1.98
632722--632811	26	3.3	26	66	19	67	20	18	33	27	1.96
633225--633365	28	5.1	27	62	15	65	21	19	31	28	1.97
633393--633533	26	5.2	26	65	21	92	17	19	34	29	1.95
634563--634627	14	4.8	13	80	10	67	0	6	9	84	0.77
634573--634626	15	3.7	15	87	5	74	0	5	7	87	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
634563--634626	17	4.1	16	80	19	73	0	6	7	85	0.73
715591--715690	28	3.6	28	93	0	155	23	20	35	22	1.96
715679--716014	51	6.4	52	68	17	194	31	12	25	30	1.93
715623--716016	212	1.9	212	89	3	616	31	13	26	28	1.94
718379--718404	13	2.0	13	100	0	52	38	15	15	30	1.88
718358--718424	33	2.0	33	88	0	98	43	16	14	25	1.86
718444--718543	19	5.9	18	71	26	94	37	15	12	36	1.84
718447--718541	32	3.0	32	95	0	172	35	15	12	35	1.86
718498--718522	13	1.9	13	100	0	50	32	16	16	36	1.90
718599--718655	21	2.7	21	97	0	105	36	19	10	33	1.86
718659--718700	13	2.9	15	82	10	61	23	0	0	76	0.79
718659--718700	14	3.0	14	80	13	59	23	0	0	76	0.79
719351--721182	55	32.5	56	82	9	1957	24	21	28	26	1.99
719423--719511	29	3.2	29	64	20	80	21	20	31	26	1.98
719351--721088	225	7.7	219	88	5	2123	24	21	28	26	1.99
719374--721146	505	3.5	505	93	2	2892	24	21	28	26	1.99
720974--721063	26	3.3	26	71	14	92	21	17	32	28	1.96
725915--725980	33	2.0	33	82	5	80	34	18	10	36	1.85
726009--726062	19	2.7	20	82	5	74	35	12	18	33	1.89
731946--731984	10	3.7	10	90	10	60	0	10	2	87	0.65
731945--731984	11	3.6	11	83	10	55	0	10	2	87	0.63
731944--731975	17	1.9	16	93	6	55	0	9	0	90	0.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
731945--731984	21	1.9	21	89	0	62	0	10	2	87	0.63
735697--735880	79	2.3	78	78	6	208	38	11	21	28	1.89
735832--735948	48	2.4	47	84	7	144	34	13	23	28	1.93
735883--736182	79	3.9	77	82	6	356	32	14	25	27	1.94
735753--736027	127	2.1	128	86	3	374	35	14	22	27	1.93
735725--736106	206	1.9	206	89	2	597	34	14	23	27	1.93
738530--738574	21	2.1	21	87	0	63	40	13	17	28	1.88
739406--739507	42	2.4	43	83	6	127	44	13	27	14	1.83
739523--739756	61	3.9	60	81	7	285	26	20	27	24	1.99
739524--739773	122	2.1	119	84	5	328	26	21	26	25	2.00

Tables:   1   2   3   4   5   6