genome.fa.s21.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold21
Parameters: 2 7 7 80 10 50 1000
Length:  2821038

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  15  of  15  ( 1753 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2633855--2633898	19	2.3	19	88	7	63	61	2	0	36	1.09
2637412--2637483	2	36.0	2	74	0	54	43	5	8	43	1.58
2641941--2641965	2	12.5	2	100	0	50	0	48	0	52	1.00
2641965--2642003	2	19.5	2	100	0	78	48	0	0	51	1.00
2645613--2645918	69	4.4	69	79	3	267	24	23	20	31	1.98
2654208--2654253	12	3.6	12	81	16	56	45	2	13	39	1.55
2654209--2654265	27	2.1	27	86	0	78	42	3	19	35	1.68
2656267--2656292	2	13.0	2	100	0	52	50	0	0	50	1.00
2660945--2660971	1	27.0	1	100	0	54	0	0	0	100	0.00
2662051--2662187	31	4.4	31	75	3	114	29	13	21	35	1.91
2666638--2666673	17	2.1	17	90	10	56	38	0	16	44	1.48
2671425--2671457	2	16.5	2	100	0	66	48	0	0	51	1.00
2672674--2672718	2	23.0	2	90	4	74	46	0	2	51	1.13
2672888--2672969	42	2.0	42	100	0	164	46	12	4	36	1.63
2673862--2673898	2	18.5	2	100	0	74	51	0	48	0	1.00
2678421--2678471	19	2.7	19	87	3	68	41	1	1	54	1.22
2683866--2683914	2	24.5	2	91	0	80	44	0	0	55	0.99
2690937--2691037	41	2.4	41	86	1	130	34	13	26	24	1.93
2694538--2694703	59	2.8	59	87	1	244	17	18	31	32	1.94
2701237--2701357	41	3.0	40	79	4	125	33	16	25	24	1.96
2703726--2703751	2	13.0	2	100	0	52	50	0	0	50	1.00
2703974--2704023	22	2.3	21	75	18	50	66	0	2	32	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2707704--2707763	16	3.9	16	77	14	54	48	1	0	50	1.11
2708539--2708571	2	17.0	2	93	6	59	48	0	0	51	1.00
2710662--2710688	2	13.5	2	100	0	54	51	0	0	48	1.00
2716693--2716720	2	14.0	2	100	0	56	50	0	0	50	1.00
2716965--2716994	2	15.0	2	92	0	51	46	0	3	50	1.18
2718504--2718535	12	2.8	12	90	9	50	53	0	0	46	1.00
2718614--2718652	7	5.6	7	93	0	60	28	23	20	28	1.99
2718614--2718660	7	6.7	7	92	0	58	29	21	23	25	1.99
2718614--2718652	14	2.8	14	92	0	69	28	23	20	28	1.99
2720496--2720526	2	15.5	2	93	0	53	51	3	0	45	1.17
2733047--2733128	17	4.6	17	73	16	60	54	1	3	40	1.26
2733833--2733867	17	1.9	19	88	11	56	57	8	14	20	1.63
2736232--2736296	6	10.5	6	86	6	76	18	29	16	35	1.93
2736254--2736304	12	4.2	12	85	9	50	21	33	15	29	1.94
2738329--2738384	16	3.6	16	75	4	60	44	21	12	21	1.85
2738573--2738616	20	2.2	18	84	15	52	40	0	0	59	0.98
2739365--2739432	16	4.2	16	77	7	66	54	17	1	26	1.52
2739387--2739444	16	3.6	16	78	2	62	56	12	0	31	1.35
2740116--2740145	2	15.0	2	100	0	60	0	50	0	50	1.00
2740145--2740170	2	13.0	2	100	0	52	50	0	0	50	1.00
2741068--2741096	15	2.0	15	93	6	51	13	44	27	13	1.82
2741159--2741197	4	10.0	4	94	5	71	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2742710--2742796	43	2.0	43	86	6	122	60	13	4	20	1.50
2744392--2744437	21	2.2	21	100	0	92	43	15	4	36	1.66
2747112--2747138	2	13.5	2	100	0	54	51	0	48	0	1.00
2751114--2751154	22	1.9	22	85	5	57	48	0	14	36	1.44
2753748--2753786	16	2.4	16	82	0	51	35	17	2	43	1.63
2756995--2757034	2	20.0	2	100	0	80	0	50	0	50	1.00
2757034--2757067	2	17.0	2	100	0	68	50	0	0	50	1.00
2765677--2765757	38	2.2	38	97	2	155	45	9	27	17	1.79
2784584--2784673	47	1.9	47	95	0	162	47	4	7	40	1.52
2790620--2790659	2	20.5	2	89	5	64	50	2	0	47	1.14
2792536--2792579	16	2.8	17	86	10	58	59	22	0	18	1.38
2793566--2793925	79	4.6	79	73	12	206	38	10	20	30	1.86
2793569--2793940	158	2.4	158	78	6	362	38	10	20	30	1.87
2793798--2794053	130	2.0	130	83	7	333	38	10	21	29	1.87
2793985--2794131	78	1.9	78	85	5	208	42	12	16	27	1.85
2796564--2796696	59	2.3	59	95	0	239	25	11	18	45	1.82
2801749--2801796	24	2.0	25	84	12	64	68	10	8	12	1.39
2806309--2806361	7	7.6	7	83	8	63	13	0	39	47	1.43
2806343--2806506	7	22.7	7	75	10	89	15	1	40	42	1.55
2806388--2806471	37	2.3	37	85	0	114	19	1	35	44	1.58
2806675--2807506	31	28.4	28	77	16	509	3	1	53	41	1.29
2806448--2807760	7	173.9	7	78	15	1032	6	2	51	39	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2807409--2807460	24	2.2	24	82	6	61	1	9	53	34	1.45
2807640--2807731	41	2.2	40	81	14	100	7	5	46	40	1.55
2807651--2807714	24	2.5	25	85	12	78	7	6	48	37	1.57
2807640--2807825	17	11.2	16	71	21	77	6	8	46	38	1.61
2808526--2808581	9	6.0	9	76	19	53	12	12	32	42	1.80
2808923--2821028	7	1687.3	7	80	14	12378	2	14	43	39	1.59
2821001--2821034	13	2.6	13	90	0	50	5	8	44	41	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15

The End!