genome.fa.s21.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold21
Parameters: 2 7 7 80 10 50 1000
Length:  2821038

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  2  of  15  ( 1753 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100530--100563	18	1.9	17	88	5	50	44	0	0	55	0.99
100949--100986	19	2.0	20	89	5	60	39	0	23	36	1.55
101075--101121	21	2.2	21	77	7	51	36	2	0	61	1.08
101190--101244	20	2.9	18	77	15	58	56	0	0	43	0.99
101778--101821	18	2.2	20	88	11	65	59	0	4	36	1.18
102786--102858	31	2.3	32	79	13	80	41	0	0	58	0.98
102880--102928	19	2.4	21	90	10	75	51	0	0	48	1.00
102785--102944	82	1.9	82	81	12	193	47	0	0	52	1.00
104441--104494	20	2.7	19	77	8	54	57	0	7	35	1.27
104563--104616	20	2.7	20	82	2	54	44	1	0	53	1.11
105375--105400	3	8.7	3	100	0	52	65	0	0	34	0.93
106012--106053	21	2.0	21	86	4	59	69	0	21	9	1.17
106419--106458	15	2.5	16	88	8	55	57	0	0	42	0.98
106419--106461	16	2.6	17	85	10	63	55	0	0	44	0.99
107207--107275	31	2.2	31	78	0	75	33	1	2	62	1.19
108053--108100	24	2.0	23	84	4	60	43	0	0	56	0.99
118232--118300	34	2.0	34	97	0	129	33	14	14	37	1.87
123708--123749	18	2.3	18	80	8	50	45	0	0	54	0.99
123870--123915	3	15.3	3	100	0	92	67	0	0	32	0.91
126172--126209	18	2.2	17	95	4	67	34	5	18	42	1.73
126449--126488	20	2.0	20	100	0	80	40	10	0	50	1.36
128341--128365	12	2.1	12	100	0	50	68	0	8	24	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
133038--133089	19	2.8	18	77	11	59	50	7	1	40	1.42
133184--133694	231	2.2	229	82	6	597	45	6	6	41	1.55
133776--133820	20	2.2	20	84	7	56	57	6	0	35	1.25
134434--134471	20	2.0	20	85	10	53	55	0	5	39	1.23
137078--137111	13	2.6	13	82	17	52	35	0	0	64	0.94
137399--137434	19	1.9	19	88	5	56	50	0	0	50	1.00
138305--138363	31	1.9	31	83	13	77	50	1	0	47	1.11
140095--140127	2	16.5	2	100	0	66	51	0	0	48	1.00
149966--150004	15	2.6	14	84	11	51	38	2	0	58	1.12
152688--152729	21	2.0	21	85	4	57	47	4	2	45	1.36
153535--153585	21	2.4	21	84	15	61	66	3	0	29	1.09
153535--153576	21	2.0	22	86	13	63	69	4	0	26	1.08
153952--153994	16	2.7	15	86	10	59	41	0	0	58	0.98
154895--154971	33	2.3	32	81	14	86	57	0	1	41	1.07
157265--157354	30	3.0	30	73	15	87	37	4	5	52	1.45
157470--157530	22	2.8	22	85	9	72	39	0	1	59	1.08
157647--157734	27	3.2	26	84	11	104	61	1	1	36	1.11
161248--161297	20	2.5	19	84	9	64	48	0	0	52	1.00
162443--162517	17	4.2	18	77	15	77	49	0	0	50	1.00
162443--162515	37	2.0	37	84	10	96	50	0	0	49	1.00
162510--162567	14	4.1	14	78	12	57	53	0	8	37	1.32
162510--162567	29	2.0	29	87	9	84	53	0	8	37	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162493--162615	65	1.9	66	81	11	155	55	0	4	39	1.25
163201--163227	2	13.5	2	100	0	54	51	0	0	48	1.00
163744--163781	18	2.1	18	85	9	51	28	0	7	63	1.23
163744--163780	19	2.0	18	89	5	56	27	0	8	64	1.21
173952--173995	23	1.9	22	82	17	54	18	38	2	40	1.63
175336--175413	23	3.3	23	72	18	72	55	0	0	44	0.99
175348--175404	29	1.9	30	85	3	80	56	0	0	43	0.99
175775--175826	14	3.8	13	78	12	50	30	0	3	65	1.10
175794--175827	16	2.2	16	89	5	52	32	0	2	64	1.08
175789--175848	28	2.1	29	81	9	70	36	1	1	60	1.17
176173--176211	10	3.8	10	80	6	51	58	2	2	35	1.25
176768--176809	20	2.2	18	91	8	66	33	0	2	64	1.07
176768--176809	9	4.4	9	88	11	66	33	0	2	64	1.07
177997--178045	22	2.2	22	80	16	57	59	4	2	34	1.28
179753--179917	83	2.0	82	84	5	217	33	10	23	32	1.89
182567--182601	15	2.4	15	90	4	54	48	2	0	48	1.16
185897--185921	2	12.5	2	100	0	50	48	0	0	52	1.00
186064--186107	21	2.1	21	87	8	63	54	0	2	43	1.12
186160--186195	19	1.9	19	88	5	56	52	8	0	38	1.32
187714--187800	15	5.5	15	69	16	52	58	0	0	41	0.98
187689--187770	9	9.7	9	75	17	61	60	0	0	39	0.96
188187--188249	21	2.8	21	80	9	72	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188938--188990	22	2.3	24	84	9	67	49	0	3	47	1.19
188976--189019	17	2.6	17	82	7	54	43	2	2	52	1.26
189000--189029	14	2.1	15	93	6	53	50	0	0	50	1.00
190108--190148	2	20.5	2	94	0	73	48	0	2	48	1.14
192976--193005	9	3.2	9	95	4	51	73	0	0	26	0.84
193128--193166	6	6.5	6	85	11	53	12	17	0	69	1.19
193983--194031	21	2.4	22	76	13	59	44	0	0	55	0.99
194166--194200	3	11.7	3	100	0	70	65	0	0	34	0.93
194464--194538	33	2.3	34	80	13	86	44	0	0	56	0.99
194522--194563	22	1.9	22	85	9	59	45	0	0	54	0.99
194466--194582	40	2.9	40	74	14	107	45	0	0	54	0.99
194796--194825	16	1.9	15	93	6	51	53	0	6	40	1.27
194835--194876	13	3.1	14	80	10	52	35	2	4	57	1.33
195424--195462	16	2.5	15	87	4	60	28	0	2	69	1.02
195613--195637	7	3.6	7	100	0	50	28	0	0	72	0.86
195654--195691	19	2.0	19	85	10	51	60	0	0	39	0.97
195718--195749	16	2.0	16	93	0	55	43	3	0	53	1.16
197942--197976	2	17.5	2	93	0	61	2	51	0	45	1.16
201229--201283	24	2.3	24	81	9	60	50	1	0	47	1.11
201691--201758	29	2.6	25	84	11	75	45	1	0	52	1.09
201891--201928	16	2.3	17	86	9	60	47	2	0	50	1.15
202621--202681	30	2.0	29	87	6	86	42	4	14	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208222--208351	8	16.4	8	67	24	55	39	0	0	60	0.97
208217--208276	22	2.7	23	76	5	68	35	0	1	63	1.05
208245--208340	33	2.8	35	80	15	112	42	0	0	57	0.98
208280--208343	18	3.8	17	74	12	60	39	0	0	60	0.97
208322--208360	13	2.9	13	85	14	53	28	2	0	69	1.02
208222--208340	33	3.4	34	77	12	109	40	0	0	59	0.97
212097--212281	34	5.5	34	86	3	248	40	25	7	26	1.82
212091--212277	102	1.9	100	91	2	311	40	25	7	26	1.82
216696--216878	34	5.4	34	86	3	244	39	26	7	26	1.83
216690--216876	102	1.9	100	91	2	311	40	25	7	26	1.82
217707--217740	4	8.5	4	93	0	50	26	17	23	32	1.97
222330--222406	35	2.2	35	82	13	88	59	0	5	35	1.20
226596--226653	30	1.9	30	89	0	89	44	6	18	29	1.76
226985--227038	28	1.9	28	81	7	65	44	3	1	50	1.30
233762--233798	18	2.1	18	94	0	65	13	10	29	45	1.77
234375--234477	34	3.0	34	95	0	188	44	4	2	47	1.39
234981--235026	24	2.0	24	86	4	67	54	2	6	36	1.39
235783--235847	29	2.2	30	81	8	80	35	0	0	64	0.94
235788--235840	24	2.2	24	84	15	67	32	0	0	67	0.91
235752--235833	5	17.4	5	70	20	52	41	0	1	57	1.06
235769--235840	14	5.0	14	72	11	56	37	0	0	62	0.95
236394--236460	24	2.6	27	82	17	81	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236408--236460	27	1.9	28	88	11	83	47	0	0	52	1.00
236451--236485	16	2.2	16	89	0	52	40	0	5	54	1.24
236673--236733	24	2.6	24	80	10	65	54	4	0	40	1.22
236856--236920	23	2.7	23	74	21	62	44	0	3	52	1.16
236857--236949	33	2.7	37	79	17	110	40	0	3	55	1.16
236873--236949	30	2.4	32	81	10	86	38	0	2	58	1.12
236872--236949	5	16.0	5	70	14	56	39	0	2	57	1.12
237406--237433	2	14.0	2	100	0	56	50	0	0	50	1.00
238092--238141	10	5.0	10	95	0	64	54	2	0	44	1.11
238091--238138	8	6.0	8	90	7	53	56	2	0	41	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15