genome.fa.s21.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold21
Parameters: 2 7 7 80 10 50 1000
Length:  2821038

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  3  of  15  ( 1753 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238100--238141	2	21.0	2	95	0	75	52	0	0	47	1.00
243725--243753	13	2.2	13	100	0	58	55	6	0	37	1.27
247470--247512	9	4.6	9	83	11	59	69	0	0	30	0.88
247470--247512	10	4.4	10	80	13	54	69	0	0	30	0.88
247470--247517	20	2.5	20	89	3	71	66	2	0	31	1.03
250699--250729	16	1.9	16	100	0	62	32	19	19	29	1.96
252026--252083	27	2.2	27	84	9	75	68	0	0	31	0.89
252019--252084	20	3.3	20	77	12	73	66	0	0	33	0.92
252178--252211	15	2.3	15	89	0	50	32	0	0	67	0.91
252511--252547	18	2.1	18	94	0	65	56	0	0	43	0.99
252523--252586	24	2.7	22	75	20	58	59	0	0	40	0.97
252538--252584	22	2.1	22	88	7	69	59	0	0	40	0.97
252921--252958	20	2.0	20	89	5	60	78	7	0	13	0.94
253425--253475	23	2.3	23	80	12	63	37	0	0	62	0.95
258831--258884	19	2.9	19	83	8	67	53	0	0	46	1.00
258831--258887	20	2.9	20	79	10	64	54	0	0	45	0.99
258871--258916	20	2.2	21	88	3	67	67	2	0	30	1.03
260663--260722	14	4.6	13	70	14	52	61	0	1	36	1.06
260757--260798	19	2.3	19	88	8	61	40	0	0	59	0.97
263296--263342	17	2.5	20	76	20	55	40	0	0	59	0.97
263937--263999	20	3.2	20	80	6	76	53	0	1	44	1.10
264010--264108	40	2.5	41	77	9	98	49	2	2	46	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264642--264692	24	2.1	25	85	3	68	35	1	0	62	1.06
264642--264701	12	4.8	13	73	15	56	36	1	0	61	1.06
265331--265386	18	2.9	19	84	7	69	32	0	1	66	1.03
265389--265421	17	2.0	17	88	5	50	42	0	3	54	1.15
265459--265491	17	1.9	17	88	11	50	33	0	3	63	1.10
265412--265491	39	2.1	39	81	13	94	35	1	2	61	1.18
272371--272415	22	2.0	22	83	8	56	53	0	2	44	1.13
272372--272415	23	2.0	22	81	4	52	54	0	2	43	1.12
272672--272703	5	6.4	5	96	0	55	78	0	21	0	0.76
272985--273033	17	2.8	17	82	17	64	59	0	0	40	0.98
272992--273056	28	2.2	30	84	10	82	60	0	0	40	0.97
273007--273055	23	2.2	21	82	7	53	61	0	0	38	0.96
273288--273329	17	2.4	18	80	7	52	26	0	0	73	0.83
273795--273851	15	3.9	15	77	8	55	52	1	1	43	1.21
274074--274150	4	19.0	4	76	7	66	66	3	2	27	1.22
274049--274183	45	2.8	49	88	8	233	60	8	4	27	1.45
274135--274197	33	1.9	33	100	0	126	53	11	6	28	1.60
274190--274221	16	2.0	16	100	0	64	18	18	31	31	1.95
274406--274450	24	1.9	23	81	4	54	53	0	0	46	1.00
274508--274552	16	2.6	16	80	13	54	35	4	0	60	1.17
274707--274739	15	2.1	17	88	11	52	69	0	0	30	0.88
277461--277496	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280767--280823	22	2.6	22	78	10	64	66	0	0	33	0.92
285275--285332	27	2.2	26	84	12	73	65	0	1	32	1.03
285280--285337	28	2.0	28	87	9	82	63	0	1	34	1.04
286016--286067	23	2.3	24	83	12	74	51	0	0	48	1.00
286054--286116	6	10.3	6	73	19	51	33	0	1	65	1.03
286062--286141	15	5.2	15	69	21	67	33	1	1	63	1.10
286056--286111	29	2.0	28	86	10	78	32	0	1	66	1.03
286125--286212	32	2.8	32	83	10	101	51	2	0	46	1.13
286180--286233	12	4.3	13	73	15	51	55	0	0	44	0.99
286165--286215	17	3.1	17	75	8	52	52	0	0	47	1.00
286210--286246	6	5.4	7	90	9	51	59	0	0	40	0.97
286202--286245	13	3.4	13	81	9	54	56	0	0	43	0.99
286846--286909	17	3.6	17	73	23	53	25	0	4	70	1.06
286862--286909	9	5.3	9	80	16	55	25	0	4	70	1.04
286855--286902	9	5.6	9	80	7	55	20	0	2	77	0.88
286846--286902	26	2.2	27	90	6	91	22	0	3	73	0.98
287081--287224	5	29.2	5	66	18	70	40	1	0	57	1.07
287081--287146	29	2.3	30	85	12	86	39	1	0	59	1.07
287081--287228	40	3.7	39	69	20	101	40	1	0	58	1.07
287130--287207	32	2.4	33	84	6	104	43	0	0	56	0.99
287091--287229	16	8.8	16	67	17	76	41	0	0	58	1.03
287156--287207	24	2.2	24	82	6	61	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287131--287234	40	2.5	40	80	14	115	43	0	0	55	1.06
287570--287600	12	2.7	12	95	5	55	64	0	0	35	0.94
287578--287618	17	2.4	16	84	8	55	63	0	2	34	1.08
287998--288031	14	2.4	14	85	0	50	11	5	0	82	0.83
289196--289242	20	2.4	19	79	6	58	46	2	0	51	1.13
289669--289728	11	5.6	12	74	21	53	40	0	0	60	0.97
289683--289734	16	3.2	16	81	10	61	38	0	0	61	0.96
289689--289755	24	2.7	23	76	15	64	35	0	1	62	1.04
289653--289755	40	2.6	41	79	13	117	38	0	0	60	1.04
289895--289958	23	2.9	21	73	13	56	37	0	0	62	0.95
289919--289977	28	2.1	29	84	9	77	30	0	0	69	0.89
289930--289979	15	3.5	15	76	18	52	34	0	0	66	0.92
289915--289977	29	2.2	29	86	11	85	31	0	0	68	0.90
291953--292029	30	2.5	31	83	8	79	37	0	5	57	1.21
292564--292596	2	16.5	2	100	0	66	51	0	0	48	1.00
365194--365246	18	2.9	18	78	10	54	37	0	1	60	1.08
365295--365328	17	1.9	18	94	5	61	41	0	0	58	0.98
365528--365591	18	3.8	16	82	13	83	25	0	0	75	0.81
365540--365607	32	2.0	35	83	8	88	27	1	0	70	0.96
366892--366929	8	4.8	8	83	9	51	0	13	2	84	0.73
372392--372698	158	1.9	159	84	7	412	32	13	21	33	1.91
374849--374889	20	2.0	20	86	9	57	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377338--377409	32	2.3	31	87	4	99	38	0	0	61	0.96
377338--377407	24	3.0	24	87	4	90	38	0	0	61	0.96
377564--377627	23	2.9	21	73	13	56	37	0	0	62	0.95
377588--377646	28	2.1	29	84	9	77	30	0	0	69	0.89
377599--377648	15	3.5	15	76	18	52	34	0	0	66	0.92
377584--377646	29	2.2	29	86	11	85	31	0	0	68	0.90
379631--379702	30	2.4	31	81	9	78	37	0	5	56	1.22
380234--380268	2	17.5	2	100	0	70	51	0	0	48	1.00
384158--384208	18	2.9	18	82	8	61	35	0	0	64	0.94
386687--386712	13	2.0	13	100	0	52	30	15	15	38	1.88
386751--386826	21	3.7	21	80	3	100	28	17	11	42	1.84
386772--386844	20	3.6	20	81	3	101	31	19	13	35	1.91
386751--386844	41	2.3	41	98	0	179	29	18	12	39	1.88
387458--387522	31	2.1	31	100	0	130	43	24	3	29	1.69
389313--389351	13	3.0	13	96	0	69	35	15	17	30	1.91
389337--389415	20	3.7	20	75	18	70	45	15	13	25	1.83
391430--391460	15	2.1	15	93	0	53	12	22	16	48	1.80
395516--395541	13	2.0	13	100	0	52	30	15	15	38	1.88
395580--395655	21	3.7	21	80	3	100	28	17	11	42	1.84
395601--395673	20	3.6	20	81	3	101	31	19	13	35	1.91
395580--395673	41	2.3	41	98	0	179	29	18	12	39	1.88
396103--396264	50	3.2	50	81	0	189	33	10	16	39	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404179--404213	2	17.5	2	100	0	70	51	0	0	48	1.00
405286--405564	36	8.0	36	87	5	274	11	24	39	25	1.88
405297--405531	105	2.2	105	81	4	278	11	23	39	25	1.88
405486--405564	33	2.4	33	97	0	149	5	27	43	24	1.75
414597--414650	2	27.0	2	96	0	99	50	1	48	0	1.11
418406--418472	16	4.2	16	74	22	61	52	0	0	47	1.00
427109--427184	37	2.1	37	82	4	93	46	0	1	52	1.08
428224--428307	27	3.2	27	78	8	86	54	0	1	44	1.07
428212--428405	6	33.0	6	66	22	58	51	0	0	47	1.04
428223--428282	20	3.1	20	79	11	72	56	0	0	43	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15