genome.fa.s256.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold256
Parameters: 2 7 7 80 10 50 1000
Length:  1244454

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 886 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564092--564155	32	2.0	33	87	3	94	32	17	14	35	1.89
564444--564472	8	3.6	8	100	0	58	51	13	20	13	1.75
567735--567759	13	1.9	13	100	0	50	36	16	16	32	1.90
567717--567780	33	2.0	32	87	3	92	39	15	14	31	1.87
568422--568489	25	2.9	24	79	18	81	33	29	1	35	1.67
570647--570671	13	1.9	13	100	0	50	36	16	16	32	1.90
570627--570693	33	2.0	33	88	0	98	32	11	14	40	1.83
570734--570758	13	1.9	13	100	0	50	32	16	16	36	1.90
570767--570895	52	2.5	52	96	0	231	34	18	17	29	1.94
575031--575057	10	2.7	10	100	0	54	0	0	22	77	0.76
584744--584821	1	78.0	1	75	0	66	87	11	1	0	0.61
584744--584821	18	4.3	18	81	14	97	87	11	1	0	0.61
584746--584821	31	2.4	31	87	12	102	86	11	1	0	0.62
584744--584821	37	2.1	36	88	11	115	87	11	1	0	0.61
586258--586370	27	4.0	27	79	6	100	30	30	17	20	1.96
586264--586622	30	12.0	30	75	10	204	28	30	16	25	1.96
586450--586618	85	2.0	86	82	6	209	30	30	18	20	1.96
586609--586767	52	3.2	52	75	17	185	24	24	16	34	1.95
586624--586713	43	2.1	43	91	0	144	26	23	17	32	1.97
587581--587605	13	1.9	13	100	0	50	36	16	16	32	1.90
587561--587627	33	2.0	33	88	0	98	32	11	14	40	1.83
587668--587692	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587701--587829	52	2.5	52	94	0	222	34	17	17	30	1.94
590920--590956	13	2.8	14	88	8	51	32	18	16	32	1.93
591906--591930	12	2.1	12	100	0	50	20	16	8	56	1.65
592517--594074	780	2.0	780	99	0	3098	28	20	14	36	1.92
596230--596269	3	13.3	3	94	0	71	30	32	0	37	1.58
598276--598660	154	2.5	154	81	5	427	23	15	19	41	1.89
598276--598733	155	3.0	154	79	6	471	24	15	18	41	1.89
600190--600245	19	2.9	19	86	2	76	32	14	16	37	1.88
600291--600321	13	2.4	13	94	0	53	35	16	9	38	1.81
600275--600343	33	2.1	33	86	5	95	31	11	17	39	1.85
602456--602506	19	2.7	19	96	0	93	31	11	17	39	1.86
602559--602583	13	1.9	13	100	0	50	32	16	16	36	1.90
616506--616613	18	6.1	17	82	12	110	84	12	1	0	0.76
616508--616614	44	2.4	45	85	11	134	84	12	2	0	0.79
616526--616613	26	3.3	25	83	13	106	86	11	2	0	0.66
616526--616604	1	79.0	1	74	0	68	87	10	2	0	0.64
616506--616613	17	6.4	16	79	11	94	84	12	1	0	0.76
618022--618255	30	8.1	28	79	15	255	32	31	15	20	1.94
618025--618259	27	8.2	28	79	13	241	33	31	15	20	1.93
618030--618259	57	4.1	57	89	0	354	33	31	15	19	1.93
618226--618306	28	2.8	28	78	12	76	34	24	18	22	1.96
618030--618296	114	2.3	113	85	5	333	34	30	15	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618313--618721	49	8.1	49	84	5	514	22	25	16	35	1.95
618313--618721	99	4.1	99	92	1	629	22	25	16	35	1.95
619606--619731	52	2.4	52	89	5	209	36	17	19	26	1.94
629642--629668	13	2.1	13	100	0	54	29	14	14	40	1.86
629698--629751	20	2.7	20	88	5	74	33	12	16	37	1.87
631015--631234	77	2.8	77	89	3	343	47	17	11	23	1.80
632567--633302	379	1.9	377	81	2	868	28	14	16	41	1.87
633727--634179	106	4.3	104	79	7	377	30	22	10	37	1.88
636849--637069	86	2.6	86	78	5	223	33	8	24	33	1.86
636874--637196	86	3.7	85	75	9	260	35	7	23	32	1.84
637035--637288	87	2.9	85	79	6	278	37	8	24	30	1.85
638808--638864	13	3.9	13	76	24	60	35	14	17	33	1.90
638788--638883	32	3.0	32	98	1	183	34	12	18	34	1.89
638786--638902	19	6.8	18	75	25	119	33	12	17	35	1.88
638957--639105	52	2.9	52	84	2	201	34	18	15	30	1.92
642895--643037	51	2.8	51	91	0	232	25	19	12	41	1.87
648027--648990	74	13.1	74	81	5	980	37	14	21	25	1.92
648028--648995	220	4.4	221	80	5	1022	37	14	21	25	1.92
649559--649675	20	5.7	20	78	6	117	29	17	14	37	1.90
652869--653067	74	2.7	74	77	10	210	36	13	21	28	1.92
653018--653116	51	1.9	51	85	4	137	36	12	21	30	1.90
652954--653191	125	1.9	126	84	4	320	36	13	22	27	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653069--653523	148	3.1	148	88	1	635	37	13	22	26	1.92
653069--653526	74	6.2	74	86	3	573	37	13	22	25	1.91
654080--654135	21	2.7	21	100	0	112	35	14	14	35	1.86
654230--654284	20	2.8	20	88	5	76	32	14	12	40	1.84
660631--660801	47	3.6	46	69	23	122	52	0	1	45	1.15
661089--661138	24	2.1	24	85	10	68	32	2	2	64	1.16
660791--661143	195	1.8	192	85	4	451	41	2	5	50	1.38
661154--661207	24	2.3	24	80	3	65	55	0	0	44	0.99
667176--667369	49	4.1	49	76	7	188	33	18	25	23	1.96
667220--667369	45	3.2	45	77	7	174	32	17	25	24	1.97
667162--667376	94	2.3	94	86	0	295	32	19	25	23	1.97
667421--667978	121	4.8	115	82	8	562	22	17	30	29	1.96
667434--667973	28	18.5	28	79	10	469	22	17	30	30	1.96
668032--668069	14	2.7	14	91	0	58	31	21	7	39	1.82
669256--669287	7	4.9	7	85	14	50	0	0	9	90	0.45
669257--669288	12	2.6	12	95	5	55	0	0	9	90	0.45
676503--676527	13	1.9	13	100	0	50	36	16	16	32	1.90
676483--676549	33	2.0	33	88	0	98	32	11	14	40	1.83
676590--676614	13	1.9	13	100	0	50	32	16	16	36	1.90
676623--676751	52	2.5	52	96	0	231	34	18	17	29	1.94
682388--682749	52	6.9	52	72	8	252	32	11	27	28	1.92
682365--682582	52	4.3	51	81	5	215	32	11	26	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682457--682582	51	2.5	50	88	1	171	34	15	25	25	1.95
682255--682748	261	1.9	261	93	0	853	30	13	28	27	1.94
682567--682638	28	2.6	28	84	8	85	25	18	34	22	1.96
685131--685172	21	2.0	21	100	0	84	28	19	9	42	1.82
685197--685274	17	4.7	17	76	17	83	38	15	10	35	1.81
685189--685253	30	2.2	30	97	0	121	35	16	12	35	1.87
685189--685238	13	3.5	13	75	19	55	36	18	12	34	1.87
686132--686802	61	11.4	59	83	5	687	25	20	27	25	1.99
686315--686771	55	8.0	55	82	9	511	24	20	28	26	1.99
687778--687849	1	72.0	1	77	0	72	1	2	6	88	0.65
687781--687849	18	3.8	17	87	12	93	1	2	7	88	0.67
687778--687850	26	2.9	25	84	8	94	1	2	8	87	0.69
695970--696150	79	2.3	79	84	3	222	32	17	25	24	1.97
696165--696289	52	2.4	51	89	4	196	29	11	28	31	1.91
698654--698694	21	2.0	21	100	0	82	26	19	9	43	1.82
698719--698847	19	6.7	19	74	12	113	40	14	11	33	1.82
698720--698850	58	2.3	58	93	1	228	40	14	11	33	1.82
701473--701498	13	2.0	13	100	0	52	38	15	15	30	1.88
701455--701518	32	2.0	33	90	3	103	42	15	14	28	1.86
702376--702401	13	2.0	13	100	0	52	30	15	15	38	1.88
702440--702515	21	3.7	21	82	3	109	28	18	11	40	1.86
702460--702533	20	3.7	20	81	3	103	31	20	13	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
702440--702533	41	2.3	41	100	0	188	29	19	12	38	1.89
704971--705009	13	3.0	13	96	0	69	35	15	17	30	1.91
704995--705073	20	3.7	20	78	15	77	44	15	15	25	1.85
708906--708950	21	2.1	21	84	8	56	22	20	4	53	1.63
711165--711190	13	2.0	13	100	0	52	30	15	15	38	1.88
711229--711304	21	3.7	21	82	3	109	28	18	11	40	1.86
711249--711322	20	3.7	20	80	3	94	31	20	12	36	1.89
711229--711322	41	2.3	41	98	0	179	29	19	11	39	1.87
717027--717052	13	2.0	13	100	0	52	38	15	15	30	1.88
717011--717072	32	1.9	33	86	3	90	43	14	14	27	1.84

Tables:   1   2   3   4   5   6   7   8