genome.fa.s256.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold256
Parameters: 2 7 7 80 10 50 1000
Length:  1244454

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 886 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1223214--1223673	92	5.0	92	92	2	726	31	18	24	25	1.97
1223668--1223904	33	7.2	33	91	5	401	18	17	35	28	1.94
1223661--1223904	65	3.8	65	91	5	397	18	17	35	28	1.94
1223886--1224502	67	9.2	66	82	9	619	33	12	33	20	1.90
1223906--1224501	200	3.0	199	88	5	812	34	12	33	19	1.90
1224482--1224527	23	2.0	23	91	0	74	17	19	32	30	1.95
1224553--1224621	35	1.9	36	88	2	104	39	8	33	18	1.82
1224598--1224773	27	6.0	27	72	20	104	32	12	32	22	1.91
1224594--1224899	34	10.0	32	72	18	181	32	13	31	22	1.92
1224309--1224807	61	8.0	61	77	13	416	31	13	33	21	1.92
1224503--1225031	30	16.9	31	69	17	229	31	14	30	22	1.94
1224594--1224847	122	2.1	121	83	7	325	33	12	32	21	1.91
1224594--1225026	61	7.0	63	83	6	234	31	14	31	22	1.94
1224747--1225032	95	3.0	95	81	7	312	30	15	30	23	1.95
1225985--1226018	17	2.0	17	88	0	50	0	8	8	82	0.85
1225967--1226014	22	2.2	22	81	7	53	0	16	4	79	0.89
1227813--1228032	79	2.8	79	83	1	289	29	27	12	31	1.93
1227970--1228085	51	2.3	50	89	4	178	31	28	10	29	1.90
1228067--1228143	28	2.7	29	86	4	104	25	31	16	25	1.97
1227941--1228272	158	2.1	158	83	3	400	28	28	14	29	1.95
1228129--1228245	51	2.3	50	83	5	137	27	29	14	28	1.95
1228177--1228378	79	2.6	79	83	3	210	27	26	14	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1228198--1228402	79	2.6	79	81	3	243	28	26	11	33	1.91
1228337--1228448	51	2.2	51	86	0	161	30	25	10	33	1.90
1233060--1233570	43	11.7	43	79	10	511	19	25	12	42	1.87
1233060--1233570	88	5.8	87	82	8	531	19	25	12	42	1.87
1233032--1233571	131	4.1	131	86	4	691	20	25	12	41	1.87
1234254--1234283	13	2.3	13	94	0	51	33	16	10	40	1.82
1236582--1236800	79	2.8	79	85	4	300	27	27	14	30	1.95
1236741--1236856	51	2.3	51	90	0	196	30	27	12	30	1.92
1236839--1236914	28	2.7	28	88	8	102	25	31	17	26	1.97
1236941--1237165	79	2.8	79	80	6	233	29	26	12	32	1.93
1237108--1237209	52	2.0	52	92	1	170	28	25	13	32	1.94
1237108--1237243	52	2.6	52	83	4	114	28	24	12	34	1.92
1238777--1238807	7	4.4	7	100	0	62	12	12	0	74	1.08
1239101--1239154	26	2.1	25	86	3	72	46	0	1	51	1.11
1239142--1239198	20	2.8	21	82	17	75	57	3	0	38	1.16
1241873--1241911	14	2.9	14	92	3	62	74	0	2	23	0.94
1241983--1242025	6	7.3	6	89	7	54	48	0	2	48	1.14
1242049--1242156	49	2.2	48	80	16	109	49	0	0	50	1.07
1242104--1242165	21	2.9	21	75	15	56	51	1	0	46	1.10
1242126--1242194	27	2.7	24	74	22	61	49	1	0	49	1.09
1242819--1242861	8	5.0	8	78	15	50	41	0	0	58	0.98
1242817--1242863	9	5.2	9	85	10	51	42	0	0	57	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1243925--1243955	16	1.9	16	93	0	53	22	0	3	74	0.96
1244024--1244074	18	3.0	16	76	20	50	60	0	0	39	0.97

Tables:   1   2   3   4   5   6   7   8

The End!