genome.fa.s256.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold256
Parameters: 2 7 7 80 10 50 1000
Length:  1244454

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 886 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1091593--1091666	28	2.6	30	89	8	111	27	20	29	22	1.98
1091646--1091765	51	2.4	51	83	5	170	34	10	23	31	1.89
1091705--1091877	79	2.2	79	81	8	226	30	13	26	30	1.94
1091827--1091899	28	2.6	28	86	4	94	26	21	28	23	1.99
1091883--1092003	51	2.4	52	79	6	149	31	11	25	31	1.91
1091548--1092061	237	2.2	237	85	2	685	33	12	24	29	1.92
1095194--1095631	45	10.1	45	74	16	331	41	11	27	19	1.86
1095199--1095630	129	3.3	129	86	6	586	42	11	27	19	1.85
1095708--1095868	46	3.6	44	75	18	118	45	9	24	19	1.80
1095696--1095888	45	4.3	44	77	11	169	40	12	24	21	1.88
1095453--1096218	239	3.2	237	88	3	1076	37	13	27	21	1.91
1095935--1096127	45	4.3	45	80	9	232	38	12	29	19	1.89
1095935--1096100	46	3.8	44	80	14	182	40	11	29	18	1.86
1096069--1096291	104	2.1	105	88	2	324	33	16	28	21	1.95
1096213--1096976	61	12.4	61	82	4	788	30	18	25	25	1.98
1096213--1096976	62	12.4	61	83	5	842	30	18	25	25	1.98
1096213--1096976	123	6.2	122	82	4	874	30	18	25	25	1.98
1103150--1103338	79	2.4	78	80	5	204	34	14	22	28	1.93
1103437--1103552	51	2.3	50	85	8	155	30	13	25	30	1.94
1103567--1103733	51	3.3	51	89	0	244	31	12	25	30	1.93
1103396--1103682	130	2.2	129	86	3	380	32	12	26	28	1.93
1103435--1103793	181	2.0	180	88	1	531	32	12	26	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1106167--1106195	13	2.2	13	100	0	58	41	13	13	31	1.84
1108060--1108110	23	2.3	23	89	3	77	47	0	23	29	1.52
1108041--1108272	116	2.0	116	90	1	367	44	0	23	31	1.59
1113024--1113106	19	4.7	19	80	17	106	32	10	18	38	1.85
1113043--1113114	32	2.2	32	90	0	117	31	11	18	38	1.85
1113138--1113204	34	2.0	33	88	2	98	25	14	13	46	1.82
1115579--1115655	27	2.8	27	88	5	102	23	35	19	22	1.96
1115608--1115787	80	2.3	79	84	4	238	25	28	16	30	1.96
1115719--1115888	52	3.3	51	82	2	196	28	27	12	31	1.93
1115505--1116076	290	2.0	285	86	3	808	26	27	13	32	1.94
1119697--1119789	20	4.7	19	89	5	89	30	18	16	35	1.92
1122004--1122030	13	2.1	13	100	0	54	29	14	14	40	1.86
1122014--1122070	19	2.9	19	86	2	78	31	17	15	35	1.92
1122099--1122167	33	2.1	33	86	5	95	30	13	20	36	1.90
1129266--1129291	13	2.0	13	100	0	52	38	15	15	30	1.88
1131510--1131554	21	2.1	21	84	8	56	53	4	20	22	1.63
1133359--1133389	15	2.1	15	93	0	53	48	16	22	12	1.80
1134913--1134938	13	2.0	13	100	0	52	30	15	15	38	1.88
1137481--1137519	13	3.0	13	96	0	69	35	15	17	30	1.91
1137505--1137583	20	3.7	20	78	15	77	44	13	15	26	1.84
1139597--1139627	15	2.1	15	93	0	53	12	22	16	48	1.80
1141431--1141475	21	2.1	21	84	8	56	22	20	4	53	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1143689--1143714	13	2.0	13	100	0	52	30	15	15	38	1.88
1145402--1145427	13	2.0	13	100	0	52	30	15	15	38	1.88
1145548--1145594	21	2.3	20	82	10	60	31	19	4	44	1.70
1147993--1148018	13	2.0	13	100	0	52	38	15	15	30	1.88
1150093--1150155	22	2.9	22	81	9	74	38	4	31	25	1.77
1150681--1150734	19	2.8	20	91	2	83	29	14	18	37	1.91
1150763--1150831	33	2.1	33	86	5	95	33	11	17	37	1.86
1159187--1159553	181	2.0	181	93	0	626	22	24	14	39	1.91
1163267--1163337	28	2.6	28	86	2	90	25	19	30	23	1.98
1163377--1163816	79	5.6	79	84	3	503	35	12	24	27	1.92
1163374--1163816	237	1.9	237	85	1	611	34	12	25	27	1.92
1166950--1167077	52	2.5	52	94	3	224	30	17	17	33	1.94
1167086--1167110	13	1.9	13	100	0	50	36	16	16	32	1.90
1167151--1167217	33	2.0	33	88	0	98	40	13	11	34	1.81
1167173--1167197	13	1.9	13	100	0	50	32	16	16	36	1.90
1168023--1168418	171	2.3	172	92	1	668	37	13	24	24	1.92
1168264--1168558	52	5.8	52	79	10	301	33	15	24	26	1.95
1168372--1168509	43	3.1	43	85	10	195	30	17	25	26	1.97
1168318--1168509	91	2.0	95	90	5	302	32	16	25	26	1.96
1168563--1168655	33	2.8	33	93	6	163	15	19	36	29	1.92
1168662--1168898	34	6.9	34	86	10	322	34	12	33	20	1.90
1168660--1168936	33	8.1	33	82	11	301	35	12	32	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1168857--1169022	62	2.7	63	84	10	200	26	16	31	24	1.97
1168878--1169022	31	4.7	31	83	10	172	24	18	31	25	1.98
1169020--1169082	1	63.0	1	80	0	63	4	4	1	88	0.66
1169017--1169072	19	3.0	19	87	7	80	5	7	3	83	0.88
1177238--1177365	52	2.5	52	93	3	215	29	18	17	33	1.95
1177238--1177385	52	2.9	50	85	12	185	31	18	18	32	1.95
1177374--1177398	13	1.9	13	100	0	50	36	16	16	32	1.90
1177439--1177505	33	2.0	33	88	0	98	40	13	11	34	1.81
1177461--1177485	13	1.9	13	100	0	50	32	16	16	36	1.90
1180135--1180188	20	2.6	20	94	5	90	42	5	12	38	1.67
1180237--1180291	20	2.7	20	88	8	76	30	20	10	38	1.87
1181579--1181622	20	2.2	20	84	12	54	81	0	15	2	0.78
1181579--1181620	22	2.0	21	85	4	57	80	0	16	2	0.81
1182142--1182271	39	3.4	39	87	8	187	27	3	22	46	1.69
1182156--1182266	35	3.0	36	90	5	161	24	2	24	48	1.64
1182761--1182790	15	2.0	15	100	0	60	26	0	0	73	0.84
1182761--1182790	7	4.1	7	91	8	51	26	0	0	73	0.84
1182762--1182799	15	2.5	15	87	8	51	26	0	2	71	1.00
1190159--1190199	21	2.0	21	100	0	82	19	29	9	41	1.83
1191788--1191820	14	2.3	15	89	5	50	36	0	3	60	1.12
1193531--1193563	12	2.8	12	86	4	50	27	0	3	69	1.03
1193883--1193972	30	3.3	27	71	17	78	41	1	0	57	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1195701--1195825	20	5.7	20	72	18	106	30	16	12	41	1.84
1203021--1203046	8	3.2	8	100	0	52	15	0	23	61	1.33
1203703--1203743	20	2.0	21	90	9	66	19	43	29	7	1.78
1205689--1205713	13	1.9	13	100	0	50	32	16	16	36	1.90
1205701--1205753	21	2.6	21	84	3	72	39	15	15	30	1.87
1205795--1205846	20	2.7	20	90	3	79	38	21	13	26	1.90
1207545--1207572	13	2.2	13	100	0	56	28	14	14	42	1.84
1208614--1209225	306	2.0	306	99	0	1206	31	13	20	34	1.91
1211591--1211739	52	2.9	52	88	0	217	32	17	16	33	1.92
1211708--1211773	20	3.7	20	69	26	74	39	13	18	28	1.89
1211711--1211785	33	2.3	33	97	0	141	40	14	17	28	1.89
1211761--1211785	13	1.9	13	100	0	50	36	16	16	32	1.90
1212575--1212697	49	2.5	49	97	0	228	33	16	27	22	1.95
1212818--1213230	43	9.0	43	79	11	439	31	18	24	25	1.98
1212430--1212917	218	2.2	217	82	7	555	35	16	25	22	1.94
1212775--1213235	92	5.0	92	93	2	753	31	18	25	25	1.97
1213230--1213466	33	7.2	33	91	5	392	19	17	34	28	1.95
1213502--1213766	67	4.0	65	83	5	318	35	13	32	19	1.90
1213569--1213936	168	2.2	168	85	4	494	35	12	32	19	1.89
1213473--1214112	61	9.9	64	82	10	520	33	12	32	20	1.90
1213903--1214074	27	5.9	27	73	20	123	31	11	34	22	1.90
1214066--1214331	30	8.5	30	76	13	200	29	15	30	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1213991--1214330	157	2.2	154	79	10	336	30	15	30	23	1.95
1214124--1214331	61	3.3	64	82	10	211	29	16	29	25	1.97
1214052--1214337	95	3.0	94	81	8	321	30	15	30	24	1.95
1215308--1215341	17	2.0	17	88	0	50	0	8	8	82	0.85
1215595--1215632	17	2.4	16	84	16	53	0	0	13	86	0.56
1222187--1222211	13	1.9	13	100	0	50	36	16	16	32	1.90
1222274--1222298	13	1.9	13	100	0	50	32	16	16	36	1.90
1223014--1223132	49	2.4	49	98	0	229	33	16	26	23	1.96
1223191--1223662	49	10.0	52	75	16	205	33	17	24	25	1.97
1223308--1223668	49	7.7	49	80	11	436	31	18	25	25	1.98

Tables:   1   2   3   4   5   6   7   8