genome.fa.s256.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold256
Parameters: 2 7 7 80 10 50 1000
Length:  1244454

Tables:   1   2   3   4   5   6   7   8   

This is table  6  of  8  ( 886 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
878865--878946	37	2.2	36	85	8	103	1	1	13	84	0.75
884939--884969	13	2.4	13	94	0	53	35	16	12	35	1.87
884923--884989	33	2.0	33	86	11	93	37	13	16	32	1.88
888304--888339	18	2.0	18	100	0	72	33	11	33	22	1.89
893031--893083	19	2.5	22	76	17	67	37	1	37	22	1.65
893545--893602	19	2.9	19	87	5	80	32	15	17	34	1.91
893647--893677	13	2.4	13	94	0	53	35	16	12	35	1.87
893631--893697	33	2.0	32	88	11	100	35	13	17	32	1.89
904242--904686	79	5.6	78	76	4	340	29	23	10	36	1.89
914196--914269	13	5.5	13	93	3	112	33	17	16	32	1.92
914347--914475	52	2.5	52	96	0	240	33	19	19	27	1.96
918607--918706	29	3.4	29	95	0	182	33	34	13	20	1.90
947244--947286	14	2.9	14	77	12	50	13	11	25	48	1.77
949093--949139	24	2.0	23	84	15	62	42	4	2	51	1.33
951769--952072	154	2.0	155	79	3	335	27	15	17	39	1.89
953879--953906	11	2.5	11	100	0	56	0	0	7	92	0.37
955849--955874	13	2.0	13	100	0	52	38	15	15	30	1.88
955831--955893	32	2.0	32	87	6	92	39	17	14	28	1.89
959266--959383	30	3.9	30	81	8	141	24	27	14	33	1.94
959269--959383	61	1.9	61	90	0	185	25	26	14	33	1.95
959490--960298	62	13.2	62	81	4	809	24	20	19	35	1.96
959466--960289	123	6.7	122	79	7	732	24	20	20	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
960796--960842	19	2.4	20	92	3	78	36	14	10	38	1.81
962529--962559	3	10.3	3	92	0	53	35	0	35	29	1.58
969264--969289	13	2.0	13	100	0	52	30	15	15	38	1.88
969274--969330	19	2.9	19	82	10	71	35	15	14	35	1.88
969412--969436	13	1.9	13	100	0	50	36	16	16	32	1.90
969366--969456	33	2.8	33	86	6	114	38	15	17	28	1.90
970497--970621	51	2.5	51	81	7	130	33	14	25	26	1.94
970555--970700	79	1.8	79	85	2	204	28	14	30	26	1.95
970635--970753	51	2.3	51	86	2	159	29	12	28	29	1.93
970546--970911	131	2.8	129	87	2	493	31	13	27	27	1.94
970510--970965	130	3.5	130	83	4	519	32	13	26	28	1.93
970769--970882	51	2.2	52	84	4	142	28	10	27	33	1.90
972722--972751	13	2.3	13	94	0	51	40	13	13	33	1.83
972673--972801	62	2.1	63	89	1	197	40	16	16	27	1.89
974465--974515	20	2.5	21	90	3	77	41	9	17	31	1.82
975275--975326	19	2.7	20	84	6	70	28	13	17	40	1.87
975275--975332	19	3.0	18	82	12	62	25	13	20	39	1.90
984118--984147	15	2.0	15	100	0	60	26	13	20	40	1.89
985425--985450	13	2.0	13	100	0	52	30	15	15	38	1.88
985571--985616	21	2.2	20	81	11	58	32	19	4	43	1.71
988003--988028	13	2.0	13	100	0	52	38	15	15	30	1.88
987985--988048	32	2.0	33	87	3	94	40	17	14	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
988808--988858	20	2.5	21	90	3	77	31	17	9	41	1.82
990575--990604	13	2.3	13	94	0	51	26	16	16	40	1.90
990525--990653	62	2.1	63	91	1	206	24	17	17	40	1.91
993005--993357	130	2.7	129	86	4	471	28	28	13	30	1.94
993162--993280	50	2.4	51	85	4	161	28	28	13	29	1.94
993213--993440	79	2.9	77	79	7	244	26	28	14	30	1.95
994507--994531	13	1.9	13	100	0	50	32	16	16	36	1.90
994487--994584	33	3.0	33	82	5	110	30	18	13	37	1.89
994613--994668	19	2.8	20	79	12	71	35	14	14	35	1.86
994654--994679	13	2.0	13	100	0	52	38	15	15	30	1.88
1003359--1003447	36	2.4	36	79	1	115	33	20	24	21	1.97
1003359--1003465	36	2.9	36	75	6	108	37	16	25	20	1.93
1003461--1004243	62	12.7	62	80	4	778	35	19	20	24	1.95
1003491--1004243	123	6.1	123	78	8	705	35	19	20	24	1.96
1009577--1009842	81	3.4	79	78	3	275	40	12	18	28	1.86
1014849--1015038	105	1.8	104	89	1	299	38	7	21	31	1.82
1014924--1015361	195	2.2	198	83	6	530	35	10	22	31	1.88
1017975--1018026	20	2.7	20	90	3	79	26	13	21	38	1.90
1020103--1020147	20	2.1	21	84	12	56	8	28	44	17	1.79
1020796--1020821	8	3.2	8	100	0	52	61	23	0	15	1.33
1029229--1029328	51	2.0	50	82	9	123	40	8	22	30	1.82
1029280--1029696	79	5.3	78	74	9	206	37	12	21	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1029322--1029772	79	5.7	79	73	8	312	37	12	21	29	1.90
1029350--1029696	157	2.2	156	80	3	383	38	12	20	28	1.89
1032159--1032199	20	2.0	20	90	0	64	29	17	7	46	1.74
1032219--1032274	20	2.7	22	75	13	64	33	14	10	41	1.80
1032239--1032292	20	2.6	21	82	2	65	33	16	11	38	1.84
1032219--1032292	21	3.6	21	76	7	71	32	14	12	40	1.83
1035514--1035539	13	2.0	13	100	0	52	30	15	15	38	1.88
1035525--1035579	19	2.8	19	91	2	83	29	21	12	36	1.91
1036439--1036790	30	11.7	30	74	14	167	29	28	16	25	1.97
1036435--1036810	28	12.6	30	76	9	238	30	28	16	25	1.96
1036435--1036810	59	6.3	59	73	12	232	30	28	16	25	1.96
1036654--1036836	28	6.3	29	86	5	196	34	26	16	21	1.95
1036654--1036836	87	2.1	86	81	9	203	34	26	16	21	1.95
1036858--1037142	52	5.9	50	77	14	310	23	27	18	30	1.98
1036859--1037141	95	3.0	95	93	2	471	23	27	18	29	1.98
1037998--1038022	13	1.9	13	100	0	50	36	16	16	32	1.90
1037978--1038044	33	2.0	33	88	0	98	32	11	14	40	1.83
1045889--1046056	79	2.1	79	85	2	221	32	14	24	27	1.95
1046013--1046084	28	2.6	29	91	6	121	26	20	30	22	1.98
1046040--1046482	79	5.6	79	88	1	638	31	15	27	25	1.96
1046434--1046509	27	2.7	29	86	6	104	22	19	32	25	1.97
1046489--1046675	51	3.7	50	85	6	259	32	12	26	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1048981--1049030	13	4.3	13	72	27	58	40	12	18	30	1.86
1048981--1049050	33	2.1	33	94	0	122	41	12	17	28	1.86
1048961--1049100	53	2.6	52	84	6	192	41	12	15	30	1.84
1049001--1049030	13	2.3	13	100	0	60	40	13	16	30	1.87
1049054--1049078	13	1.9	13	100	0	50	40	8	16	36	1.77
1048961--1049100	20	7.7	19	72	23	106	41	12	15	30	1.84
1052675--1052866	61	3.1	61	84	3	242	37	10	26	25	1.89
1052801--1052990	52	3.6	52	78	5	188	35	15	24	24	1.94
1053067--1053157	32	2.9	32	88	3	132	24	17	29	28	1.97
1053158--1053456	27	10.2	27	76	15	192	33	11	31	23	1.90
1053183--1053502	59	5.3	61	79	9	259	34	12	30	22	1.91
1053142--1053429	89	3.2	89	78	12	300	33	11	32	22	1.89
1053245--1053502	59	4.3	59	81	8	306	34	12	30	23	1.91
1053142--1053475	32	11.1	32	78	13	300	33	11	32	23	1.90
1053485--1053532	24	2.1	23	85	11	71	39	16	27	16	1.90
1053507--1053648	30	4.5	30	76	10	149	37	15	25	21	1.93
1053507--1053665	30	5.1	30	75	10	140	36	15	25	22	1.93
1059363--1059442	38	2.0	40	83	4	101	35	25	5	35	1.78
1059447--1059490	21	2.1	21	83	8	54	25	31	4	38	1.76
1061295--1061333	13	3.0	13	100	0	78	38	15	15	30	1.88
1065240--1065284	21	2.1	21	84	8	56	22	20	4	53	1.63
1067503--1067528	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1073278--1073319	21	2.0	21	85	0	57	64	0	2	33	1.07
1073277--1073325	15	3.3	15	80	11	57	65	0	2	32	1.04
1077018--1077060	22	2.0	22	81	9	52	20	13	2	62	1.42
1078777--1078874	42	2.4	42	87	5	137	14	25	21	38	1.91
1080550--1080603	13	4.2	13	88	4	83	70	25	1	1	1.07
1080549--1080603	25	2.2	25	93	0	92	69	27	1	1	1.09
1084781--1084805	13	1.9	13	100	0	50	36	24	16	24	1.94
1091336--1091520	79	2.3	79	84	7	250	36	14	21	27	1.93
1091491--1091607	51	2.3	51	86	2	155	29	15	28	27	1.96
1091464--1091793	158	2.1	159	82	5	400	32	13	25	28	1.94

Tables:   1   2   3   4   5   6   7   8