genome.fa.s265.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold265
Parameters: 2 7 7 80 10 50 1000
Length:  864291

Tables:   1   2   3   4   5   6   

This is table  1  of  6  ( 713 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1418--1452	9	3.9	9	88	0	52	20	2	0	77	0.90
1507--1537	16	1.9	16	93	0	53	51	3	0	45	1.17
2151--2186	2	18.5	2	88	5	56	0	50	2	47	1.15
6353--6393	22	1.9	21	90	5	64	39	0	0	60	0.96
6574--6627	3	18.0	3	92	7	92	66	0	1	31	1.02
6898--6945	21	2.3	21	78	7	53	60	8	0	31	1.26
7156--7227	34	2.1	34	97	0	135	18	15	23	43	1.88
10582--10615	17	2.1	17	89	10	54	41	5	0	52	1.25
10973--11015	22	2.0	22	90	9	70	39	0	0	60	0.97
11181--11211	3	10.3	3	100	0	62	67	0	0	32	0.91
16177--16215	21	1.9	21	85	15	55	20	5	2	71	1.17
17522--17650	70	1.9	68	87	7	190	41	13	13	31	1.84
22766--22804	19	2.0	20	85	14	55	53	2	0	43	1.14
24113--24159	2	23.5	2	100	0	94	51	0	0	48	1.00
24938--24985	2	24.0	2	100	0	96	50	0	0	50	1.00
25825--25867	2	21.5	2	100	0	86	0	48	0	51	1.00
31788--31812	1	25.0	1	100	0	50	0	0	0	100	0.00
33370--33411	14	2.8	16	79	17	54	38	4	9	47	1.57
33408--33478	31	2.3	31	85	4	90	26	5	21	46	1.73
33526--33573	16	2.9	16	87	3	69	33	4	8	54	1.50
33934--34087	76	2.0	76	98	0	299	41	14	10	33	1.80
38287--38323	15	2.4	16	86	8	51	8	29	2	59	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38453--38489	16	2.3	16	100	0	74	37	5	24	32	1.78
39318--39369	12	4.4	12	75	22	56	55	0	1	42	1.10
39321--39384	17	3.7	17	75	8	58	56	0	1	42	1.09
41244--41305	20	3.2	19	78	15	63	46	0	0	53	1.00
41286--41320	13	2.6	14	82	17	56	42	0	0	57	0.99
41889--41950	16	3.9	16	86	0	97	33	1	3	61	1.22
42455--42513	15	3.8	16	80	6	77	33	1	3	61	1.23
42404--42512	46	2.4	47	77	9	118	33	2	8	55	1.44
41742--42871	563	2.0	567	97	2	2129	36	6	11	45	1.67
43090--43144	16	3.2	16	82	7	65	56	0	0	43	0.99
43097--43150	17	3.2	16	81	5	63	64	0	0	35	0.94
43412--43496	11	7.7	11	76	10	50	54	0	0	45	1.00
43472--43507	5	7.6	5	87	12	58	38	0	0	61	0.96
43472--43518	15	3.3	13	88	11	58	38	0	0	61	0.96
43533--43592	20	3.2	20	74	13	63	50	0	1	48	1.11
43518--43569	25	2.0	26	82	10	63	53	0	0	46	1.00
44794--44823	14	2.1	14	93	0	51	30	26	10	33	1.89
49495--49530	12	2.9	12	91	4	54	0	8	2	88	0.59
49493--49530	14	2.6	14	91	4	58	0	7	2	89	0.57
62169--62253	32	2.6	33	80	14	106	47	1	1	50	1.16
62233--62287	25	2.2	25	84	12	69	32	1	0	65	1.03
62239--62293	25	2.1	27	83	9	80	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62253--62305	27	2.0	25	82	13	63	32	0	1	66	1.03
62640--62684	18	2.5	18	85	7	56	33	2	2	62	1.20
62910--63007	10	10.1	9	71	16	63	58	1	0	40	1.05
63651--63686	13	2.8	13	95	4	65	58	0	27	13	1.36
64088--64144	17	3.4	17	76	7	55	70	3	7	19	1.26
67962--68008	2	23.5	2	100	0	94	51	0	0	48	1.00
70346--70399	19	2.8	20	75	11	58	62	12	3	20	1.45
70451--70516	6	11.0	6	90	0	78	36	0	3	60	1.12
70451--70516	18	3.7	18	85	0	87	36	0	3	60	1.12
70829--70863	17	2.0	18	88	5	54	65	0	0	34	0.93
70834--71091	138	1.9	137	85	1	356	53	8	6	31	1.57
71786--71823	13	2.9	13	96	0	67	68	0	0	31	0.90
72086--72123	14	2.8	14	80	19	53	44	0	0	55	0.99
74300--74361	15	4.1	15	85	4	88	58	3	1	37	1.24
74846--74883	20	1.9	20	88	0	58	47	2	0	50	1.15
75537--75582	8	5.8	8	80	14	51	23	0	2	73	0.94
75538--75587	16	3.2	16	86	8	68	28	0	2	70	0.99
75618--75669	9	6.3	9	72	20	51	57	0	0	42	0.98
78134--78188	23	2.4	24	79	14	62	49	9	1	40	1.45
79148--79182	15	2.3	15	90	9	54	42	2	0	54	1.15
80668--80749	28	2.9	28	80	7	96	26	17	31	24	1.97
80732--80902	51	3.3	51	79	4	198	32	11	26	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80885--80988	28	3.8	28	92	3	158	23	20	33	23	1.97
83403--83428	13	2.0	13	100	0	52	38	15	15	30	1.88
83382--83448	33	2.0	33	88	0	98	43	16	14	25	1.86
83468--83535	19	3.9	18	76	23	83	38	14	11	35	1.83
83490--83514	13	1.9	13	100	0	50	32	16	16	36	1.90
83471--83533	32	2.0	32	96	0	117	36	15	12	34	1.86
83591--83647	21	2.7	21	97	0	105	36	19	10	33	1.86
83652--83699	1	48.0	1	93	0	69	4	2	0	93	0.39
85805--85867	31	2.0	31	96	0	117	28	11	19	41	1.85
95446--95607	81	2.0	81	95	0	288	35	16	10	37	1.83
95593--96160	140	4.0	135	77	12	477	32	6	9	51	1.59
95593--96160	69	8.0	70	78	10	539	32	6	9	51	1.59
95991--96143	78	2.0	76	88	7	231	29	7	9	54	1.59
95923--96205	146	2.0	138	82	10	340	31	7	9	51	1.60
98146--98192	2	23.5	2	86	0	67	42	0	6	51	1.27
98226--98254	2	14.5	2	100	0	58	0	48	0	51	1.00
98574--98626	23	2.2	23	83	12	63	39	11	0	49	1.39
98864--98911	16	3.1	16	78	3	53	50	2	0	47	1.12
99054--99120	32	2.1	32	94	0	116	46	7	1	44	1.40
99055--99113	16	3.7	16	73	8	57	44	6	1	47	1.39
101295--101325	2	15.5	2	100	0	62	51	0	48	0	1.00
105484--105564	7	10.9	7	76	16	65	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105484--105567	31	2.8	30	73	7	89	35	0	0	64	0.94
105484--105623	52	2.7	53	76	14	121	43	0	0	56	0.99
105571--105635	33	2.0	33	81	6	78	49	0	1	49	1.10
107032--107077	10	4.5	10	86	8	58	54	0	0	45	0.99
107028--107077	20	2.5	21	87	9	77	54	0	0	46	1.00
107608--107640	14	2.4	14	90	5	50	48	0	3	48	1.17
108288--108325	18	2.1	18	90	0	58	71	0	0	28	0.87
108588--108623	3	12.0	3	100	0	72	33	0	0	66	0.92
108793--108826	14	2.4	14	95	0	59	58	5	2	32	1.37
108911--108944	18	1.9	18	88	5	52	41	0	0	58	0.98
109373--109405	3	11.0	3	93	0	57	30	0	66	3	1.06
109800--109846	17	2.8	17	81	9	60	68	0	0	31	0.90
109805--109850	23	1.9	24	91	8	76	65	0	0	34	0.93
109863--109916	17	3.2	17	76	23	51	53	5	0	40	1.24
110214--110239	13	2.0	13	100	0	52	61	7	0	30	1.24
110325--110369	19	2.3	20	85	11	67	64	0	0	35	0.94
110327--110375	11	4.3	11	80	16	55	65	0	0	34	0.93
110819--110870	19	2.8	18	72	16	52	40	1	0	57	1.10
116507--116541	18	2.0	17	88	5	52	71	0	0	28	0.86
121067--121099	2	16.5	2	100	0	66	48	0	0	51	1.00
123388--123430	3	14.3	3	100	0	86	32	0	0	67	0.91
123714--123801	44	2.0	44	95	0	158	39	17	23	19	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
125484--125550	27	2.5	27	82	2	73	29	5	16	47	1.70
130008--130097	24	3.6	24	72	11	74	27	7	18	45	1.77
131269--131328	17	3.5	16	76	19	59	75	13	3	8	1.16
132305--132343	18	2.2	18	85	0	51	41	2	5	51	1.38
132482--132514	8	4.1	8	92	0	57	12	3	0	84	0.72
140626--140661	18	2.0	18	88	0	54	44	0	0	55	0.99
140704--140753	21	2.4	22	80	10	59	44	2	0	54	1.11
140944--140976	3	11.0	3	100	0	66	33	0	0	66	0.92
141157--141184	14	2.0	14	100	0	56	64	0	0	35	0.94
143798--143906	45	2.3	48	86	7	145	63	11	5	19	1.47

Tables:   1   2   3   4   5   6