genome.fa.s265.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold265
Parameters: 2 7 7 80 10 50 1000
Length:  864291

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 713 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691229--691364	63	2.1	63	86	6	184	30	22	8	38	1.83
693625--693683	28	2.0	29	83	6	75	54	0	3	42	1.17
693858--693910	24	2.2	24	83	6	63	24	1	3	69	1.15
694241--694304	32	2.0	33	84	9	87	56	0	1	42	1.09
694359--694399	21	1.9	22	90	5	66	41	0	0	58	0.98
697036--697086	25	2.0	25	81	7	59	33	1	1	62	1.17
697162--697188	14	1.9	14	100	0	54	51	0	7	40	1.30
697271--697300	2	15.0	2	100	0	60	50	0	0	50	1.00
702816--702844	5	5.8	5	100	0	58	0	41	20	37	1.53
704072--704125	16	3.5	16	74	20	53	61	0	0	38	0.96
704095--704134	20	2.0	20	85	14	55	62	0	0	37	0.95
704310--704360	16	3.2	16	82	0	66	45	1	0	52	1.12
704317--704374	16	3.7	16	81	9	66	51	1	0	46	1.11
708321--708369	21	2.3	21	89	6	73	32	2	14	51	1.54
710287--710317	7	4.4	7	95	0	53	22	29	3	45	1.68
712188--712230	21	2.0	21	100	0	86	23	32	13	30	1.93
713762--713801	2	20.0	2	94	0	71	47	0	0	52	1.00
715017--715043	6	4.5	6	100	0	54	33	0	14	51	1.43
715412--715455	3	14.7	3	100	0	88	65	0	0	34	0.93
715601--715646	2	23.0	2	86	0	56	50	45	4	0	1.21
717097--717129	2	16.5	2	100	0	66	0	48	0	51	1.00
717129--717153	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
717969--718000	2	16.0	2	100	0	64	0	50	0	50	1.00
719562--719639	16	4.7	17	71	23	51	46	0	1	52	1.08
721772--721799	2	14.0	2	100	0	56	50	0	0	50	1.00
722907--722945	16	2.4	16	86	4	51	66	5	2	25	1.25
725196--725253	30	1.9	30	82	6	73	25	8	17	48	1.75
725705--725748	3	14.7	3	95	0	79	34	0	0	65	0.93
727832--727881	22	2.2	24	80	20	63	6	10	6	78	1.10
728694--728775	41	2.0	40	88	2	119	41	18	20	19	1.91
731157--731210	28	1.9	28	85	7	74	70	20	1	7	1.21
733754--733786	14	2.4	14	95	5	59	42	0	0	57	0.98
734736--734805	35	2.1	35	84	10	92	52	0	0	47	1.00
735361--735387	2	13.5	2	100	0	54	51	0	0	48	1.00
736760--736817	16	3.7	16	74	4	64	46	3	0	50	1.18
736951--737032	16	5.1	16	69	5	58	43	0	3	52	1.18
736936--737050	32	3.7	32	86	4	146	42	1	3	52	1.28
736944--737066	64	1.9	63	86	4	176	42	1	3	52	1.27
736973--737075	30	3.4	29	78	11	107	40	0	2	55	1.21
738530--738567	17	2.2	17	86	9	51	78	0	5	15	0.91
739096--739137	22	1.9	22	90	0	66	59	0	0	40	0.97
746986--747014	2	14.5	2	100	0	58	51	0	0	48	1.00
747933--747982	21	2.3	21	80	12	57	42	20	4	34	1.70
751562--751728	82	2.0	84	96	2	311	40	16	9	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
753356--753382	6	4.5	6	100	0	54	66	14	18	0	1.25
754491--754572	25	3.4	25	72	16	75	42	0	2	54	1.13
756271--756325	18	3.4	17	70	25	55	54	1	1	41	1.21
757700--757737	20	2.0	20	89	5	60	42	5	23	28	1.76
759326--759366	18	2.3	18	95	0	73	48	0	0	51	1.00
759564--759601	20	1.9	19	89	5	58	55	0	0	44	0.99
759671--759738	19	3.5	19	75	11	57	38	0	1	60	1.06
763092--763141	2	25.0	2	100	0	100	50	0	0	50	1.00
767930--767957	5	5.6	5	100	0	56	82	0	0	17	0.68
769079--769108	16	1.9	15	93	6	51	46	0	0	53	1.00
769570--769601	2	16.0	2	100	0	64	50	0	0	50	1.00
774045--774106	23	2.5	24	77	17	56	48	0	0	51	1.00
774270--774340	20	3.4	20	68	24	65	46	25	4	23	1.70
774252--774351	43	2.3	43	98	0	191	40	25	5	30	1.77
775095--775137	16	2.6	17	81	3	52	60	2	0	37	1.10
776772--777087	142	2.2	142	92	1	517	27	12	12	47	1.77
778980--779010	2	15.5	2	100	0	62	51	0	0	48	1.00
778956--779011	18	3.2	17	82	7	58	57	7	0	35	1.26
787077--787126	24	2.1	24	100	0	100	54	6	8	32	1.54
787564--787605	22	1.9	22	85	0	57	35	14	2	47	1.57
789005--789185	100	1.8	100	84	4	249	44	3	2	49	1.33
789467--789557	27	3.3	27	76	15	80	58	0	2	39	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
793619--793663	15	3.1	15	81	15	58	84	0	15	0	0.62
793624--793661	18	2.1	18	95	0	67	81	0	18	0	0.69
793680--793725	23	2.0	22	83	4	56	56	2	0	41	1.11
794014--794071	23	2.5	23	75	10	73	44	1	3	50	1.29
794050--794083	13	2.5	13	90	4	50	44	2	0	52	1.16
794050--794089	12	3.1	13	89	7	55	47	2	0	50	1.14
798220--798266	2	23.5	2	100	0	94	51	0	48	0	1.00
798882--798919	20	1.9	19	89	5	58	44	0	0	55	0.99
798907--798985	16	4.6	16	70	20	61	48	3	0	48	1.19
798881--798919	6	6.2	6	82	11	51	46	0	0	53	1.00
798886--798984	53	1.9	50	85	6	135	48	3	0	48	1.17
800835--800935	46	2.2	47	82	3	134	46	0	3	48	1.27
802070--802124	30	2.0	29	86	13	80	21	7	18	52	1.69
805312--805451	74	1.9	74	87	0	208	39	8	16	35	1.79
813389--813414	2	13.0	2	100	0	52	0	50	0	50	1.00
816938--816968	4	7.8	4	100	0	62	22	0	0	77	0.77
817507--817565	28	2.1	28	100	0	118	10	30	16	42	1.82
821037--821080	22	2.0	22	90	0	70	56	0	2	40	1.11
821052--821111	16	3.8	16	84	0	75	48	3	3	45	1.35
822395--822436	18	2.3	18	87	0	57	47	4	0	47	1.23
822691--822727	16	2.3	16	85	0	56	54	16	0	29	1.43
823587--823741	82	1.9	82	81	6	186	40	20	16	23	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
824931--824970	16	2.7	14	78	14	53	35	0	0	65	0.93
831395--831485	20	4.6	20	87	0	137	36	8	16	38	1.80
836034--836082	3	16.3	3	91	8	82	65	0	32	2	1.04
839327--839366	20	2.0	20	95	0	71	30	12	15	42	1.83
840003--840128	62	2.0	63	81	7	150	45	6	3	45	1.45
841248--841284	18	2.1	18	94	0	65	35	16	27	21	1.94
841320--841357	20	1.9	20	84	10	51	57	7	13	21	1.60
841489--841528	21	1.9	21	89	0	62	60	0	40	0	0.97
841528--841598	14	4.7	15	70	14	56	74	0	23	1	0.90
841960--841985	13	2.0	13	100	0	52	23	7	7	61	1.49
842422--842853	110	3.9	107	77	9	320	36	14	15	32	1.89
854765--854876	19	5.6	18	71	27	75	77	8	11	1	1.06
854778--854849	13	5.7	12	74	14	56	76	9	11	2	1.12
854764--854877	45	2.6	45	81	5	135	77	9	11	1	1.07
856158--856197	21	1.9	21	84	0	53	35	30	5	30	1.79
858910--858960	24	2.1	25	96	3	95	50	3	7	37	1.50
862704--862770	21	3.2	21	72	8	64	16	7	31	44	1.75
862744--863708	7	136.7	7	84	8	492	3	3	51	42	1.35
862752--863488	14	52.3	14	87	4	993	2	1	53	42	1.24
862752--863488	21	34.9	21	88	4	993	2	1	53	42	1.24
863532--864278	7	103.3	7	73	21	515	2	13	43	40	1.59
862752--864278	21	72.4	21	77	15	525	3	7	48	41	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
864086--864278	19	9.7	19	76	19	121	1	15	45	38	1.55
864088--864278	101	1.9	101	82	12	241	1	15	45	38	1.56
864254--864291	15	2.6	15	87	4	51	2	15	47	34	1.60

Tables:   1   2   3   4   5   6

The End!