genome.fa.s265.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold265
Parameters: 2 7 7 80 10 50 1000
Length:  864291

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 713 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573198--573235	6	6.0	6	88	11	58	31	0	2	65	1.06
573199--573243	20	2.2	20	96	0	81	28	0	2	68	1.01
573200--573246	14	3.4	14	80	8	53	27	0	2	70	0.99
573700--573735	6	5.8	6	87	6	54	13	0	2	83	0.76
573699--573735	19	1.9	19	94	0	65	13	0	2	83	0.74
573700--573735	13	2.8	13	91	4	56	13	0	2	83	0.76
575776--575819	18	2.4	18	84	3	61	29	0	0	70	0.88
577277--577319	23	1.9	22	85	4	59	39	4	0	55	1.20
577570--577614	16	2.7	17	80	13	58	55	0	0	44	0.99
577588--577652	24	2.8	24	80	13	73	56	0	0	43	0.99
577590--577632	11	3.7	11	81	9	50	58	0	0	41	0.98
577575--577652	39	2.0	40	82	7	97	57	0	0	42	0.98
577597--577652	17	2.8	21	71	23	57	58	0	0	41	0.98
577635--577677	20	2.1	21	86	4	61	60	4	0	34	1.17
577919--578037	32	4.0	29	67	26	79	42	0	0	57	1.04
577952--578014	13	4.8	14	71	25	57	47	0	0	52	1.00
577933--578014	34	2.2	37	87	12	116	45	0	0	54	0.99
577941--577996	16	3.4	16	73	9	58	50	0	0	50	1.00
577934--578046	14	7.6	16	69	14	64	42	0	0	56	1.05
577995--578035	21	1.9	22	85	5	57	34	2	0	63	1.08
578322--578373	18	2.8	19	74	5	54	34	0	0	65	0.93
585541--585593	16	3.2	16	78	21	56	35	0	1	62	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585840--585878	8	4.9	8	96	0	69	53	0	0	46	1.00
585838--585882	8	5.6	8	94	0	63	53	0	0	46	1.00
586261--586295	16	2.3	15	90	9	54	60	0	0	40	0.97
586304--586358	20	2.8	20	77	0	65	56	0	1	41	1.10
587145--587199	8	6.9	8	80	12	51	83	0	10	5	0.79
587160--587200	9	3.9	11	87	12	52	85	0	14	0	0.60
587284--587309	2	13.0	2	100	0	52	50	0	0	50	1.00
587662--587722	31	2.1	30	82	14	74	40	0	0	59	0.98
587887--587919	17	2.0	17	88	5	50	54	0	0	45	0.99
588017--588044	14	2.0	14	100	0	56	42	0	0	57	0.99
588048--588077	9	3.3	9	100	0	60	43	0	0	56	0.99
588249--588358	25	4.5	25	75	8	75	42	0	0	56	1.05
588249--588327	25	3.2	25	83	3	79	43	0	0	56	0.99
588270--588315	19	2.5	18	79	6	56	39	0	0	60	0.97
588270--588330	13	4.8	13	78	13	56	39	0	0	60	0.97
588556--588595	15	2.7	15	80	0	53	37	0	5	57	1.21
588620--588675	28	1.9	30	85	7	80	46	0	3	50	1.19
589703--589768	29	2.3	30	89	5	100	43	3	0	53	1.16
594635--594738	30	3.4	30	71	21	97	28	13	40	17	1.87
599517--599588	28	2.6	27	82	4	90	45	18	6	29	1.75
601466--601511	21	2.1	22	84	4	58	19	30	19	30	1.97
604091--604157	28	2.4	27	82	2	80	47	13	7	31	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
604250--604292	15	2.9	14	82	6	50	65	0	2	32	1.06
604390--604419	16	1.9	15	93	6	51	30	0	3	66	1.07
605020--605050	15	2.1	15	93	0	53	41	29	12	16	1.85
606850--606896	24	2.0	23	84	12	60	53	2	6	38	1.39
606994--607034	15	2.6	16	81	14	50	56	21	2	19	1.54
607155--607197	16	2.7	16	88	0	59	41	16	9	32	1.80
607193--607240	22	2.2	22	81	7	53	43	18	6	31	1.75
607941--607994	9	5.7	9	81	12	63	61	1	1	35	1.18
608450--608491	23	1.9	23	85	9	61	59	2	4	33	1.31
609883--609941	14	4.6	13	74	12	52	57	1	3	37	1.25
611051--611083	13	2.5	14	90	9	52	66	0	0	33	0.92
611395--611438	24	1.9	24	81	9	56	45	4	0	50	1.22
611432--611478	15	3.3	15	79	11	62	59	4	0	36	1.17
611436--611478	13	3.1	14	80	10	52	58	4	0	37	1.19
613091--613163	32	2.2	33	87	2	103	56	1	0	42	1.08
616200--616256	17	3.4	16	80	7	51	36	0	0	63	0.95
616212--616255	17	2.6	16	86	10	61	43	0	0	56	0.99
618505--618546	21	2.1	21	86	8	61	21	4	0	73	1.01
618813--618889	33	2.3	33	84	6	93	61	0	0	38	0.96
618814--618863	24	2.0	24	84	3	64	68	0	0	32	0.90
618843--618935	34	3.1	28	72	21	82	56	1	0	41	1.06
618870--618936	17	3.9	17	74	16	59	58	1	0	40	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
619646--619740	50	1.9	49	85	10	131	50	0	0	49	1.00
621765--621841	5	15.6	5	69	17	54	58	0	0	41	0.98
621764--621892	58	2.1	62	78	12	144	55	1	0	42	1.09
622936--622990	10	5.7	9	83	12	65	63	3	1	30	1.22
623233--623277	23	1.9	24	86	4	65	42	2	2	53	1.25
629535--629577	23	1.9	23	85	4	61	46	0	0	53	1.00
629840--629890	15	3.2	16	75	13	52	25	0	3	70	1.04
629829--629881	24	2.1	26	83	13	67	24	0	3	71	1.02
629839--629887	10	4.9	10	78	9	55	24	0	4	71	1.03
632836--632880	22	2.0	22	87	8	65	53	0	0	46	1.00
633824--633925	32	3.3	33	80	11	110	58	0	0	40	1.04
634214--634265	16	3.2	16	81	10	61	51	9	5	32	1.58
635884--635926	15	2.8	15	80	16	52	46	0	2	51	1.13
636894--636933	16	2.4	17	83	4	55	27	0	0	72	0.85
636899--636937	19	2.0	20	90	5	62	35	0	0	64	0.94
637618--637658	9	4.4	9	85	14	57	31	0	0	68	0.90
637612--637660	4	12.5	4	76	20	50	28	0	0	71	0.86
637618--637666	14	3.5	13	79	20	55	32	0	0	67	0.91
637624--637659	19	1.9	18	94	5	63	30	0	0	69	0.89
637681--637722	20	2.1	20	82	8	50	47	0	0	52	1.00
637885--637924	19	2.1	19	90	0	62	62	2	0	35	1.09
639548--639601	5	11.2	5	81	15	53	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639545--639599	29	1.9	28	89	10	85	61	0	0	38	0.96
639556--639628	8	8.2	9	74	17	55	61	0	0	38	0.96
639550--639628	24	3.2	24	79	10	72	62	0	0	37	0.96
639548--639604	19	3.0	20	80	12	66	64	0	0	35	0.93
639585--639658	33	2.3	32	83	4	87	59	0	0	40	0.97
639588--639675	31	3.1	25	68	24	59	59	0	0	40	0.98
645182--645230	16	3.1	16	87	0	71	59	0	0	40	0.98
645189--645235	16	2.9	16	87	9	69	57	2	0	40	1.11
646492--646532	2	20.5	2	94	0	73	46	0	2	51	1.14
651543--651593	3	17.0	3	100	0	102	33	0	0	66	0.92
651725--651766	22	1.9	22	90	0	66	54	2	0	42	1.13
653447--653487	6	6.8	6	97	0	73	34	2	14	48	1.57
654906--654973	18	4.2	17	71	25	51	54	1	5	38	1.34
654906--654976	31	2.4	30	78	17	85	56	1	5	36	1.32
655647--655677	14	2.1	15	94	5	55	58	0	0	41	0.98
655632--655672	20	2.0	20	100	0	82	60	0	0	39	0.96
656548--656589	14	3.0	14	100	0	84	42	0	0	57	0.99
657283--657330	18	2.8	16	87	9	60	54	0	0	45	0.99
657282--657331	6	8.5	6	79	16	52	52	0	0	48	1.00
659141--659340	98	2.0	98	81	5	235	33	22	15	29	1.94
662949--662997	18	2.7	18	93	0	71	24	61	0	14	1.33
662943--663002	24	2.5	24	88	0	84	25	61	1	11	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662940--663002	6	10.5	6	82	0	54	26	60	1	11	1.40
667404--667477	28	2.7	27	82	12	87	40	2	1	55	1.22
669472--669523	19	2.7	19	80	11	54	48	0	0	51	1.00
669454--669525	23	3.1	22	72	20	67	48	0	0	51	1.00
669674--669728	29	1.9	28	85	3	74	50	1	0	47	1.11
670103--670154	26	2.0	25	85	10	70	50	0	1	48	1.12
670113--670167	26	2.1	27	86	10	78	52	0	0	47	1.00
670283--670321	20	2.0	20	85	5	53	46	5	0	48	1.24
681464--681516	2	27.0	2	96	3	99	49	0	0	50	1.00
683534--683586	25	2.1	25	100	0	106	60	15	15	9	1.58

Tables:   1   2   3   4   5   6