genome.fa.s265.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold265
Parameters: 2 7 7 80 10 50 1000
Length:  864291

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 713 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331976--332000	13	1.9	13	100	0	50	32	16	16	36	1.90
332009--332132	52	2.4	52	93	1	205	35	17	17	29	1.93
337809--337878	11	6.4	10	80	12	68	82	11	5	0	0.82
337806--337864	29	2.0	28	83	6	73	81	13	5	0	0.85
337809--337878	16	4.4	16	75	12	63	82	11	5	0	0.82
339124--339479	28	12.5	28	82	7	412	30	30	16	21	1.95
339118--339489	141	2.6	139	85	5	458	30	30	16	22	1.96
340404--340579	20	7.8	20	66	23	82	30	15	12	41	1.84
340515--340609	30	3.5	30	69	28	102	26	20	12	41	1.88
340393--340578	71	2.6	71	91	0	311	30	16	12	41	1.85
340495--340630	51	2.7	51	91	3	213	27	17	13	41	1.87
345616--345705	45	2.0	45	91	4	146	44	14	15	25	1.84
348099--348144	17	2.8	17	74	16	51	32	0	0	67	0.91
348089--348213	64	2.0	63	80	10	139	44	0	0	54	1.05
348538--348585	25	1.9	25	95	0	87	33	2	4	60	1.27
348607--348656	22	2.2	23	89	10	77	52	0	0	48	1.00
348873--348941	29	2.3	29	78	14	77	42	5	5	46	1.52
349554--349595	22	1.9	22	85	9	59	35	0	2	61	1.09
350141--350178	8	4.3	9	84	15	53	31	0	0	68	0.90
350136--350178	18	2.4	18	88	3	61	32	0	0	67	0.91
350138--350175	20	1.9	20	88	0	58	34	0	0	65	0.93
352513--352547	10	3.4	10	92	4	52	40	5	2	51	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353064--353106	21	2.0	22	86	8	63	60	4	2	32	1.30
355054--355117	20	3.4	18	81	12	58	70	3	3	23	1.16
355549--355613	25	2.7	23	84	9	94	33	12	1	52	1.48
355678--355717	2	21.0	2	85	10	57	47	0	52	0	1.00
357477--357514	19	2.0	19	85	10	51	55	0	0	44	0.99
358228--358278	25	2.0	25	84	3	66	43	0	3	52	1.19
358238--358291	24	2.2	25	86	3	74	40	0	1	57	1.09
358916--358975	22	2.6	24	78	19	65	61	0	0	38	0.96
358949--359001	18	2.8	19	80	11	65	56	0	0	43	0.99
360439--360473	17	2.1	17	94	0	61	42	0	0	57	0.99
366427--366460	14	2.3	15	85	10	52	55	0	0	44	0.99
369758--369786	2	14.5	2	100	0	58	51	0	0	48	1.00
371214--371261	6	7.8	6	88	4	60	0	75	0	25	0.81
379105--379135	2	15.0	2	93	6	53	48	0	3	48	1.17
379862--379891	12	2.5	12	88	0	51	46	23	0	30	1.52
380450--380573	57	2.2	57	84	7	155	46	3	2	47	1.31
381391--381435	16	2.8	16	86	10	56	66	0	4	28	1.11
381522--381555	15	2.1	17	89	10	54	73	0	0	26	0.83
382015--382074	11	4.9	12	69	18	52	56	0	1	41	1.09
383016--383094	21	3.9	20	77	12	72	59	0	1	39	1.06
383016--383071	11	5.5	10	74	19	53	64	0	1	33	1.04
383024--383172	11	14.1	11	67	18	66	57	0	1	40	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383062--383139	32	2.8	25	73	26	75	53	0	0	46	1.00
383094--383144	16	2.9	17	81	18	61	54	0	0	45	0.99
383077--383131	18	3.3	18	70	29	59	54	0	0	45	0.99
388592--388628	18	2.0	19	89	5	58	62	0	0	37	0.96
390524--390573	21	2.3	23	83	12	63	34	14	14	38	1.85
394030--394077	10	4.7	11	75	19	59	29	0	0	70	0.87
394021--394060	16	2.3	17	83	16	55	32	0	0	67	0.91
394022--394078	19	3.0	19	82	14	57	29	0	0	70	0.88
394409--394443	2	17.5	2	100	0	70	51	0	0	48	1.00
394527--394566	21	1.9	21	94	0	71	40	2	2	55	1.27
403083--403123	18	2.4	17	84	8	57	51	0	0	48	1.00
403077--403130	23	2.3	24	75	18	67	50	0	0	50	1.00
403075--403142	13	4.5	14	76	18	57	48	0	0	51	1.00
403119--403175	18	3.3	17	73	11	53	36	0	0	63	0.95
403364--403425	26	2.3	26	78	8	63	48	0	1	50	1.10
403391--403435	20	2.2	21	84	11	58	55	0	0	44	0.99
406631--406696	27	2.6	25	80	15	73	54	0	0	45	0.99
406654--406700	24	1.9	25	95	4	87	48	0	0	51	1.00
406644--406718	24	3.2	24	83	10	77	54	0	1	44	1.08
406765--406794	13	2.3	13	100	0	60	16	0	6	76	0.99
406763--406830	32	2.1	33	86	5	95	27	0	5	66	1.15
406777--406820	19	2.2	20	80	15	56	25	0	6	68	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409994--410020	12	2.2	12	100	0	54	85	0	0	14	0.61
411121--411160	2	20.0	2	100	0	80	50	0	0	50	1.00
414142--414172	16	1.9	16	100	0	62	38	0	0	61	0.96
414155--414192	20	1.9	20	88	0	58	42	2	0	55	1.14
414168--414222	28	2.0	28	82	10	69	43	3	0	52	1.18
414208--414258	18	3.2	16	79	15	61	54	1	0	43	1.11
414208--414252	16	2.7	17	83	12	58	55	2	0	42	1.12
414201--414252	18	3.3	16	75	19	56	51	1	0	46	1.12
414204--414263	17	3.4	18	69	21	56	51	1	0	46	1.10
414154--414277	33	3.8	33	72	21	100	45	2	0	51	1.14
414254--414310	12	4.8	12	75	14	55	33	1	0	64	1.04
414269--414322	29	2.0	26	89	10	81	27	1	0	70	0.98
414656--414692	2	18.5	2	100	0	74	51	0	0	48	1.00
415635--415691	14	4.5	13	75	16	57	42	0	0	57	0.98
419543--419590	19	2.5	19	82	3	60	33	0	4	62	1.14
419559--419617	9	6.1	10	71	15	52	32	1	0	66	1.02
419558--419600	19	2.3	18	80	11	50	34	0	0	65	0.93
419627--419673	21	2.1	23	85	14	64	51	0	0	48	1.00
419918--419947	3	10.0	3	100	0	60	66	0	33	0	0.92
420364--420412	14	3.4	14	77	5	62	48	2	0	48	1.12
420402--420465	24	2.6	25	80	16	71	62	1	0	35	1.05
420367--420429	29	2.1	29	85	8	81	50	3	0	46	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420513--420539	8	3.4	8	100	0	54	22	0	0	77	0.76
421194--421224	2	15.5	2	100	0	62	0	0	48	51	1.00
421442--421482	7	5.9	7	85	0	55	24	9	0	65	1.22
421442--421483	21	2.0	21	100	0	84	23	9	0	66	1.21
421609--422166	236	2.3	241	81	6	630	37	14	9	37	1.80
423885--423920	3	12.0	3	100	0	72	33	0	0	66	0.92
426341--426369	10	2.9	10	100	0	58	37	0	0	62	0.96
432050--432105	16	3.4	17	72	18	55	41	0	0	58	0.98
432062--432152	30	3.0	31	75	20	95	40	0	0	59	0.97
432119--432157	19	2.1	19	85	9	53	33	0	0	66	0.92
433513--433576	19	3.3	20	76	10	62	56	1	0	42	1.09
433509--433577	20	3.5	20	71	15	63	56	1	0	42	1.08
433508--433585	38	2.0	39	82	7	97	55	1	1	42	1.16
433620--433651	15	2.0	17	88	11	50	21	3	6	68	1.26
433741--433765	4	6.2	4	100	0	50	24	0	0	76	0.80
434129--434170	16	2.6	17	85	7	52	52	0	4	42	1.22
435835--435862	2	14.0	2	100	0	56	50	0	50	0	1.00
436586--436617	2	16.0	2	93	0	55	50	0	3	46	1.17
443964--443996	15	2.1	16	88	5	50	69	9	0	21	1.15
445813--445847	2	17.5	2	93	0	61	48	0	2	48	1.16
449090--449120	2	16.0	2	93	6	55	51	0	48	0	1.00
457657--457691	16	2.2	16	89	0	52	17	0	5	77	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460786--460827	22	2.0	22	95	4	77	61	9	14	14	1.55
460927--460967	21	2.0	20	86	13	57	41	0	0	58	0.98
461237--461302	23	3.0	20	71	23	53	22	7	0	69	1.13
461260--461302	19	2.2	19	87	4	59	20	4	0	74	1.00
461849--461907	22	2.7	22	83	0	64	49	3	5	42	1.41
462170--462209	17	2.4	17	83	4	55	45	0	7	47	1.31
462624--462672	2	24.5	2	95	0	89	46	0	2	51	1.12
463204--463625	211	2.0	212	83	1	542	39	13	14	33	1.85
469555--469591	19	1.9	19	94	0	65	48	0	0	51	1.00
470054--470078	12	2.1	12	100	0	50	76	0	0	24	0.80

Tables:   1   2   3   4   5   6