genome.fa.s265.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold265
Parameters: 2 7 7 80 10 50 1000
Length:  864291

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 713 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470520--470557	19	2.0	20	89	5	60	34	0	2	63	1.09
470813--470850	6	6.5	6	87	6	60	26	0	0	73	0.83
470867--470915	25	2.0	23	88	7	71	16	4	2	77	1.01
470873--470921	23	2.0	25	88	7	75	16	6	0	77	0.96
471541--471591	2	25.5	2	95	0	93	49	1	0	49	1.12
471703--471735	17	1.9	17	88	11	50	54	0	3	42	1.15
474068--474113	24	2.0	23	83	12	58	43	0	0	56	0.99
474514--474583	16	4.6	14	69	19	50	48	1	0	50	1.09
474503--474541	20	1.9	21	89	5	62	53	0	0	46	1.00
474516--474559	16	2.8	16	82	0	52	52	0	0	47	1.00
474885--474916	15	2.1	16	94	5	57	43	0	0	56	0.99
475932--475965	17	2.0	17	88	0	50	26	2	8	61	1.40
476499--476571	32	2.2	32	83	7	85	52	5	2	39	1.39
477437--477467	2	15.5	2	100	0	62	51	0	0	48	1.00
477747--477785	16	2.4	16	86	0	60	38	2	7	51	1.44
478073--478135	29	2.2	29	78	13	67	60	0	0	39	0.97
478186--478223	18	2.1	18	90	0	58	55	2	2	39	1.28
479667--479769	34	3.0	34	98	0	197	36	24	14	24	1.93
485299--485329	2	15.5	2	100	0	62	51	0	0	48	1.00
491456--491557	40	2.6	40	88	1	152	47	13	15	23	1.82
492843--492894	21	2.5	21	82	14	63	28	1	0	69	0.99
493145--493178	12	2.8	12	81	0	50	50	11	29	8	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496620--496674	17	3.2	17	74	7	58	43	3	0	52	1.18
496622--496699	31	2.4	33	81	12	90	39	3	1	55	1.26
499656--499704	24	2.0	24	92	8	80	28	0	0	71	0.86
499651--499710	26	2.3	28	80	16	83	33	0	0	66	0.92
501446--501521	31	2.5	31	80	8	84	30	1	1	67	1.07
501445--501514	33	2.2	32	80	12	81	30	1	0	68	0.98
501700--501754	19	2.9	19	86	5	67	27	3	7	61	1.39
502552--502587	5	7.4	5	87	6	56	80	2	16	0	0.83
503855--503923	26	2.9	25	71	20	67	55	0	2	42	1.15
503864--503973	11	10.5	11	67	19	56	57	0	2	39	1.19
503862--503935	16	4.9	15	73	14	64	52	0	2	44	1.15
504015--504039	12	2.1	12	100	0	50	8	0	0	92	0.40
504086--504131	14	3.3	14	85	8	58	50	0	0	50	1.00
504182--504231	15	3.6	14	82	12	68	52	0	0	48	1.00
504214--504265	18	2.9	19	75	16	58	55	0	0	44	0.99
507973--508043	32	2.2	33	84	2	90	38	4	7	50	1.49
509768--509808	3	13.7	3	100	0	82	34	0	0	65	0.93
510104--510205	52	2.0	52	90	3	161	35	2	8	52	1.47
510803--510851	19	2.5	20	76	10	55	40	0	0	59	0.98
511004--511073	28	2.5	29	82	13	76	37	0	2	60	1.12
511121--511197	12	6.3	12	80	7	75	32	1	2	63	1.16
511003--511174	18	9.1	19	68	21	94	37	0	3	58	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511121--511174	23	2.2	25	84	12	60	29	0	1	68	1.00
511716--511753	18	2.1	18	90	9	60	60	0	0	39	0.97
511714--511774	23	2.6	24	78	14	65	60	1	0	37	1.07
511969--512018	16	3.1	16	75	16	50	74	4	0	22	0.99
512346--512374	2	14.5	2	100	0	58	0	51	0	48	1.00
518559--518600	22	1.9	23	85	9	61	61	0	4	33	1.17
519078--519137	30	2.0	30	96	0	111	18	6	16	58	1.59
519253--519296	23	1.9	23	86	9	63	45	0	0	54	0.99
522857--522885	3	9.7	3	100	0	58	68	0	31	0	0.89
524377--524415	18	2.2	18	95	0	69	2	7	0	89	0.56
524377--524416	11	3.6	11	90	6	55	2	10	0	87	0.63
524631--524704	31	2.4	30	82	6	87	37	0	0	62	0.96
524830--524872	9	4.7	9	79	2	50	27	0	2	69	1.00
524783--524860	37	2.1	38	90	2	122	35	0	2	61	1.10
525281--525344	22	3.1	22	68	21	66	50	4	0	45	1.22
525361--525405	25	1.9	22	86	13	63	42	0	4	53	1.21
526576--526626	3	17.0	3	100	0	102	66	0	0	33	0.92
526836--526953	48	2.5	45	73	16	121	41	6	10	41	1.65
526932--527008	31	2.4	33	91	4	122	37	6	15	40	1.73
528683--528750	16	4.5	15	79	12	61	57	0	2	39	1.14
528700--528845	8	17.3	9	69	19	50	57	0	0	41	1.03
528686--528845	46	3.9	39	71	20	112	56	0	1	41	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528730--528820	36	2.9	31	78	19	91	56	0	0	43	0.99
531422--531494	37	1.9	38	86	8	105	63	0	1	35	1.04
531431--531489	9	6.6	9	74	12	50	66	0	0	33	0.92
531436--531495	10	6.2	10	77	13	63	66	0	0	33	0.92
533037--533074	14	2.8	13	92	8	58	44	0	0	55	0.99
534802--534843	22	2.0	21	90	4	66	61	2	0	35	1.09
535634--535718	16	5.3	16	71	12	59	45	20	9	24	1.80
535997--536135	45	3.1	45	100	0	278	41	2	8	47	1.46
539278--539325	2	24.0	2	82	0	60	47	6	2	43	1.40
539192--539402	102	2.1	102	96	0	386	32	14	10	42	1.80
540701--540731	14	2.2	14	94	0	53	22	0	0	77	0.77
540773--540824	26	2.0	26	84	0	68	50	0	0	50	1.00
542298--542331	15	2.2	16	90	10	54	32	0	0	67	0.91
542288--542349	21	2.7	23	80	9	74	32	0	0	67	0.91
542292--542349	14	4.0	14	82	10	64	32	0	0	67	0.91
542410--542456	21	2.3	21	86	13	64	65	0	0	34	0.93
542414--542477	26	2.5	25	80	14	69	64	0	0	35	0.94
542734--542788	24	2.3	24	84	9	69	56	0	0	43	0.99
542935--542972	17	2.2	18	85	4	51	36	0	0	63	0.95
543239--543460	74	3.0	74	93	5	389	31	23	19	25	1.98
544658--544698	21	1.9	22	90	5	66	48	4	0	46	1.23
544658--544704	21	2.3	20	85	10	60	51	4	0	44	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545736--545924	96	2.0	96	93	0	288	48	6	7	37	1.58
546301--546337	15	2.6	15	87	8	51	51	0	2	45	1.15
548160--548188	2	14.5	2	100	0	58	48	0	0	51	1.00
548254--548280	3	9.0	3	100	0	54	33	0	0	66	0.92
549610--549662	24	2.1	26	86	6	74	24	1	1	71	1.06
549871--549897	2	13.5	2	100	0	54	48	0	0	51	1.00
550459--550543	8	12.0	7	68	19	52	54	0	0	45	1.00
550600--550679	30	2.8	26	72	17	70	68	0	0	31	0.90
550608--550646	19	2.1	18	90	4	60	61	0	0	38	0.96
550608--550659	19	2.7	19	85	8	52	61	0	0	38	0.96
550616--550681	30	2.2	31	78	13	75	68	0	0	31	0.90
551846--551894	22	2.3	21	86	6	64	55	0	0	44	0.99
551861--551902	20	2.0	21	86	4	59	47	2	0	50	1.14
552183--552249	16	4.2	16	71	21	68	41	0	0	58	0.98
552183--552234	20	2.9	17	81	15	61	40	0	0	59	0.97
553497--553550	22	2.4	24	79	11	62	48	0	0	51	1.00
553983--554043	21	3.0	20	79	11	61	62	0	1	36	1.05
555923--556031	53	2.1	53	100	0	218	40	13	9	36	1.77
555922--556006	26	3.2	26	65	15	75	38	14	10	36	1.80
558094--558169	25	3.0	26	74	16	61	48	3	0	47	1.20
563969--564019	16	3.2	16	80	0	66	45	3	9	41	1.56
563969--564098	55	2.4	55	84	0	152	46	8	9	35	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564619--564674	3	18.7	3	100	0	112	32	0	0	67	0.91
564851--564890	2	20.0	2	100	0	80	50	0	0	50	1.00
567022--567066	15	2.7	18	76	13	51	37	0	0	62	0.96
567133--567163	14	2.2	14	94	0	53	19	0	0	80	0.71
567236--567367	69	1.9	68	93	1	228	18	18	6	55	1.65
567730--567763	17	1.9	18	94	5	61	32	0	0	67	0.91
567730--567781	17	3.2	17	82	15	58	34	0	0	65	0.93
568537--568587	14	3.7	13	82	10	57	64	1	0	33	1.05
568773--568828	16	3.3	18	68	22	50	42	1	0	55	1.10
572339--572403	33	2.0	33	87	0	94	41	0	4	53	1.21

Tables:   1   2   3   4   5   6