genome.fa.s275.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold275
Parameters: 2 7 7 80 10 50 1000
Length:  1025155

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 811 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
310974--311011	15	2.4	16	86	4	51	34	0	0	65	0.93
312061--312125	21	3.0	21	73	13	53	69	1	26	3	1.12
317291--317327	16	2.4	16	86	8	51	64	0	2	32	1.07
318399--318469	33	2.1	34	84	7	92	36	2	0	60	1.11
326264--326301	2	19.0	2	100	0	76	50	0	0	50	1.00
329147--329206	2	30.0	2	100	0	120	50	0	50	0	1.00
337951--337977	2	13.5	2	100	0	54	51	0	0	48	1.00
338610--338693	10	8.1	11	67	20	56	40	0	1	58	1.06
339601--339649	2	25.0	2	83	4	64	48	4	0	46	1.20
339946--340012	32	2.0	34	88	11	104	43	0	2	53	1.16
341788--341895	53	2.0	53	98	0	207	44	6	9	39	1.62
342726--342876	82	1.8	81	84	5	205	35	20	14	29	1.92
346512--346549	20	1.9	20	88	0	58	44	10	13	31	1.77
346588--346658	20	3.8	20	76	14	78	42	14	12	30	1.82
346617--346650	16	2.1	16	94	0	59	50	8	11	29	1.69
347545--348014	28	16.5	28	83	4	510	22	15	31	31	1.95
353354--353379	13	2.0	13	100	0	52	30	15	15	38	1.88
353334--353397	32	2.0	33	90	3	103	26	14	17	42	1.87
355747--355793	21	2.3	20	78	10	51	42	4	19	34	1.70
355915--355953	13	3.0	13	96	0	69	35	15	17	30	1.91
362115--362140	13	2.0	13	100	0	52	30	15	15	38	1.88
362095--362158	32	2.0	33	93	3	112	28	14	15	42	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363611--363732	34	3.6	34	87	0	172	22	28	13	36	1.91
363706--363936	29	7.7	29	78	7	230	26	32	17	23	1.97
363706--363941	59	3.9	59	82	4	276	26	32	17	24	1.97
363893--363994	29	3.5	31	76	16	110	30	28	20	20	1.98
363999--364169	49	3.4	52	80	8	219	22	25	18	33	1.97
364093--364247	78	2.0	78	81	0	184	22	28	15	33	1.95
364974--365031	13	4.0	13	74	23	53	34	15	17	32	1.91
365069--365093	13	1.9	13	100	0	50	32	16	16	36	1.90
378223--378358	51	2.7	50	77	6	139	38	13	17	29	1.89
378324--378375	20	2.6	20	81	0	68	40	15	13	30	1.86
379613--379665	25	2.1	25	100	0	106	47	11	9	32	1.71
380115--380164	21	2.4	21	93	0	82	30	0	12	58	1.34
380656--380696	22	1.9	22	85	5	57	53	0	0	46	1.00
381848--381880	2	16.5	2	100	0	66	48	0	0	51	1.00
381919--381955	18	2.0	19	89	5	58	51	0	0	48	1.00
384199--384274	31	2.5	31	80	6	75	48	1	2	47	1.24
384197--384259	25	2.5	25	82	5	74	47	1	0	50	1.10
384253--384363	35	3.1	35	73	14	93	43	3	2	50	1.33
384601--384631	2	15.5	2	100	0	62	51	0	0	48	1.00
391701--391745	24	1.9	23	81	4	54	60	4	4	31	1.37
392114--392151	18	2.1	18	85	9	51	55	2	0	42	1.14
395600--395643	22	2.0	23	82	13	56	36	11	22	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396483--396535	17	3.2	17	81	5	72	33	7	15	43	1.74
406004--406064	14	4.5	13	76	19	54	36	1	0	62	1.05
406146--406195	23	2.0	25	85	11	68	68	2	18	12	1.30
406313--406369	19	3.0	18	80	16	62	80	0	17	1	0.79
406317--406369	21	2.6	20	84	3	70	83	0	15	1	0.74
406335--406379	20	2.3	19	82	14	56	80	2	15	2	0.92
408297--408338	18	2.3	18	91	0	66	19	26	26	28	1.98
410819--410860	16	2.6	16	84	3	57	19	0	2	78	0.86
411541--411597	24	2.4	25	79	8	73	7	35	12	45	1.69
411803--411846	18	2.4	18	80	0	52	9	22	13	54	1.67
412536--412590	14	3.6	14	77	18	56	20	3	5	70	1.22
412587--412642	15	3.6	15	77	17	69	33	1	5	58	1.31
412539--412640	32	3.2	32	95	1	177	27	2	5	63	1.32
413121--413621	42	12.0	42	76	5	413	36	19	29	14	1.91
416684--416804	52	2.3	52	97	0	224	28	19	18	34	1.95
416684--416824	52	2.7	52	91	2	185	29	19	18	32	1.95
416813--416837	13	1.9	13	100	0	50	36	16	16	32	1.90
416876--416965	13	6.0	13	71	26	63	34	16	14	34	1.89
416890--416987	19	5.8	18	71	28	90	36	17	12	33	1.87
416877--416985	32	3.4	32	96	1	191	34	17	13	33	1.89
417288--417634	42	8.2	42	74	7	281	36	17	29	15	1.91
420638--420711	28	2.6	28	93	0	121	27	22	29	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423158--423238	32	2.6	32	92	2	128	34	17	14	33	1.90
423193--423217	13	1.9	13	100	0	50	32	16	16	36	1.90
423173--423258	19	4.8	18	70	25	65	34	16	13	34	1.88
423296--423334	21	1.9	20	94	5	69	35	12	15	35	1.86
424094--424320	55	4.0	55	85	7	269	24	19	27	28	1.99
430621--430669	19	2.4	19	80	13	53	44	4	20	30	1.70
434213--434266	20	2.7	20	88	0	72	25	18	12	42	1.86
436618--436733	51	2.3	51	86	3	153	28	26	12	31	1.93
436669--437078	79	5.2	79	86	1	565	26	25	15	32	1.95
439277--439307	16	1.9	16	93	0	53	16	0	3	80	0.83
439996--440052	13	4.8	11	72	16	51	1	36	15	45	1.57
440004--440050	13	3.8	12	81	13	60	2	40	12	44	1.54
439996--440052	24	2.4	24	90	0	96	1	36	15	45	1.57
440965--441102	17	8.3	18	68	23	81	24	2	5	68	1.21
440985--441039	14	3.6	14	77	18	56	20	3	5	70	1.22
440985--441102	33	3.6	33	87	5	168	25	2	5	66	1.24
441036--441091	15	3.6	15	71	17	51	32	1	5	60	1.29
440988--441089	32	3.2	32	94	1	168	26	2	5	64	1.30
441068--441098	15	2.1	15	93	0	53	35	0	0	64	0.94
444475--444520	21	2.2	22	88	11	78	45	0	0	54	0.99
444482--444522	21	2.0	21	100	0	82	46	0	0	53	1.00
444518--444565	11	4.2	11	86	7	69	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444794--444827	13	2.6	13	85	0	50	5	17	0	76	0.98
444924--444967	16	2.7	16	83	13	54	43	0	0	56	0.99
445356--445405	22	2.3	22	83	13	59	42	4	0	54	1.19
445927--445976	10	4.5	11	78	14	50	70	0	6	24	1.10
445940--445981	21	2.0	21	90	9	68	71	0	7	21	1.09
446807--446901	50	1.9	48	89	4	145	41	18	11	28	1.86
449015--449092	33	2.4	33	83	8	90	33	19	10	37	1.85
452551--452592	19	2.1	21	86	8	61	40	7	0	52	1.29
453081--453139	32	1.9	30	83	13	75	59	10	10	20	1.58
453420--453445	13	2.0	13	100	0	52	30	15	15	38	1.88
453399--453463	32	2.0	34	90	6	107	30	12	15	41	1.84
454109--454335	110	2.1	110	99	0	447	29	28	3	38	1.74
455633--455673	20	2.0	20	85	4	55	9	26	41	21	1.84
456090--456127	13	2.9	13	96	0	67	31	15	18	34	1.92
458279--458314	17	2.1	17	100	0	72	77	0	5	16	0.94
458318--458374	21	2.7	21	97	0	105	33	10	19	36	1.86
458430--458497	19	3.9	19	78	21	85	35	11	14	38	1.83
458451--458475	13	1.9	13	100	0	50	36	16	16	32	1.90
458432--458494	32	2.0	32	96	0	117	34	12	15	36	1.86
458537--458562	13	2.0	13	100	0	52	30	15	15	38	1.88
458517--458583	33	2.0	33	88	0	98	25	14	16	43	1.86
461034--461102	27	2.5	27	88	6	95	24	30	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461089--461258	52	3.3	53	80	11	190	29	24	12	33	1.92
461242--461317	28	2.7	29	86	8	95	23	34	18	23	1.96
460919--461324	211	1.9	212	88	4	613	28	26	13	31	1.94
460979--461391	107	3.9	106	73	13	319	27	26	14	30	1.95
461193--461391	106	1.9	108	82	4	260	27	27	15	30	1.96
461273--461506	80	2.9	78	77	5	227	26	27	14	32	1.94
462550--462580	15	2.1	15	93	0	53	12	22	16	48	1.80
466309--466367	32	1.9	30	83	13	75	59	10	10	20	1.58
466627--466691	19	3.6	19	69	30	54	29	13	15	41	1.86
466648--466673	13	2.0	13	100	0	52	30	15	15	38	1.88

Tables:   1   2   3   4   5   6   7