genome.fa.s275.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold275
Parameters: 2 7 7 80 10 50 1000
Length:  1025155

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 811 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
917512--917545	11	3.1	11	100	0	68	17	17	35	29	1.93
924239--924271	13	2.3	15	90	10	52	87	6	0	6	0.65
925816--925998	32	5.7	32	86	6	230	31	27	18	22	1.97
925811--925998	96	1.9	97	87	5	274	30	27	18	23	1.97
926005--926136	43	3.1	43	85	4	178	25	24	18	31	1.97
926091--926418	51	6.2	51	75	10	232	26	22	14	36	1.92
926091--926346	103	2.5	102	79	6	277	26	23	14	35	1.93
927169--927227	18	3.4	17	76	6	64	72	5	1	20	1.12
927171--927215	17	2.6	17	82	3	54	73	4	2	20	1.11
929321--929741	158	2.7	158	83	5	505	28	22	13	35	1.92
929321--929745	79	5.4	78	79	6	419	28	23	12	35	1.92
931533--931619	25	3.6	25	71	22	69	39	3	0	57	1.16
931544--931619	24	3.1	24	73	19	68	38	3	0	57	1.17
931816--931873	26	2.2	26	78	6	64	29	6	6	56	1.51
932245--932280	3	12.0	3	93	0	63	30	0	2	66	1.06
933262--933380	34	3.3	34	70	18	98	40	2	0	56	1.19
933882--933912	16	1.9	16	100	0	62	19	35	6	38	1.77
934987--935018	2	16.0	2	100	0	64	50	0	0	50	1.00
935156--935197	19	2.2	20	86	4	59	47	7	2	42	1.43
935528--935565	17	2.3	17	86	4	51	15	2	10	71	1.25
936610--936678	25	2.9	23	78	21	72	40	2	0	56	1.14
936885--936942	26	2.2	26	78	6	64	29	6	6	56	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
937314--937352	3	13.0	3	88	0	60	30	2	2	64	1.21
938282--938452	28	5.9	28	65	21	68	42	2	1	53	1.21
938399--938453	18	3.2	18	70	17	53	41	0	1	56	1.10
938334--938454	34	3.4	34	72	18	111	41	2	0	55	1.19
938562--938603	21	2.0	21	85	0	57	38	2	2	57	1.25
939063--939109	19	2.4	20	89	3	69	34	2	4	59	1.29
940974--941031	29	1.9	30	82	6	73	51	0	0	48	1.00
941911--942095	34	5.5	34	86	3	248	40	25	7	26	1.82
946506--946690	34	5.5	34	86	3	248	40	25	7	26	1.82
948298--948341	21	2.2	20	87	4	61	54	2	0	43	1.12
948324--948367	17	2.5	17	77	3	52	54	2	0	43	1.12
951157--951199	2	21.5	2	95	0	77	48	2	48	0	1.14
951439--951494	21	2.7	21	80	5	60	69	5	0	25	1.09
951519--951763	127	1.9	126	89	0	373	47	5	8	38	1.57
952340--952383	21	2.0	22	82	4	54	36	2	2	59	1.23
952989--953059	32	2.2	33	84	2	90	42	2	2	52	1.31
954450--954493	22	2.0	23	82	13	56	63	4	2	29	1.26
954452--954498	25	2.0	23	84	15	62	68	4	2	25	1.19
960882--960925	15	2.8	16	82	6	54	81	0	0	18	0.68
960877--960935	24	2.4	25	88	11	95	77	3	0	18	0.90
967842--967896	20	2.8	20	91	2	85	36	18	12	32	1.88
967882--967908	13	2.1	13	100	0	54	40	14	14	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
968873--968898	13	2.0	13	100	0	52	30	15	15	38	1.88
968853--968916	32	2.0	33	90	3	103	28	14	15	42	1.86
971455--971490	13	2.8	13	95	0	63	33	16	16	33	1.92
973558--973587	15	2.0	15	93	0	51	6	20	23	50	1.71
975597--975638	18	2.3	18	84	12	50	16	11	7	64	1.48
977663--977688	13	2.0	13	100	0	52	30	15	15	38	1.88
977643--977706	32	2.0	33	90	3	103	28	14	15	42	1.86
980191--980237	22	2.2	23	85	14	66	46	0	21	31	1.51
986415--986511	33	2.9	34	87	6	112	36	16	12	35	1.86
986440--986482	20	2.2	20	82	0	50	37	13	13	34	1.85
986448--986510	20	3.5	20	68	28	68	33	17	14	34	1.90
986541--986594	19	2.8	20	88	2	74	37	9	12	40	1.76
987764--987790	12	2.2	12	100	0	54	29	14	11	44	1.80
1006799--1006975	79	2.2	80	87	5	252	30	14	27	27	1.95
1006828--1007102	130	2.1	129	87	0	388	32	13	26	28	1.94
1006906--1007024	51	2.3	51	91	0	193	31	13	26	27	1.94
1006641--1007102	209	2.2	209	80	5	497	33	12	25	27	1.93
1006957--1007103	78	1.9	79	88	1	224	29	14	27	28	1.95
1006828--1007154	130	2.5	130	83	1	334	32	13	25	28	1.93
1007040--1007227	103	1.8	101	85	2	259	34	11	23	30	1.91
1007025--1007257	103	2.3	98	76	6	241	32	12	25	29	1.92
1007300--1007423	52	2.4	52	84	4	151	31	11	25	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1007036--1007422	51	7.4	51	72	8	269	31	12	26	28	1.93
1009787--1009812	13	2.0	13	100	0	52	38	15	15	30	1.88
1009799--1009840	21	2.0	21	100	0	84	28	19	9	42	1.82
1009857--1009929	32	2.3	32	95	0	128	35	19	12	32	1.89
1009865--1009927	19	3.6	19	70	24	66	36	19	12	31	1.89
1014692--1014720	12	2.3	13	94	5	51	68	3	0	27	1.05
1014727--1014997	35	7.7	35	95	0	497	43	5	31	19	1.74
1016213--1016285	27	2.6	28	89	6	105	26	31	19	23	1.98
1016240--1016655	79	5.3	79	89	0	611	27	25	15	32	1.95
1016586--1016707	52	2.4	53	84	6	153	27	24	13	33	1.94
1016586--1016733	52	2.9	51	80	8	142	28	22	12	37	1.90
1022810--1023349	55	9.5	55	85	5	636	26	29	20	23	1.99
1023394--1023964	55	10.0	55	82	9	605	26	27	19	26	1.99
1023367--1023977	116	5.3	116	82	9	703	26	27	19	26	1.99
1023657--1023741	28	3.0	28	63	13	75	28	27	16	28	1.97
1023829--1024119	156	1.9	152	83	10	383	26	28	20	25	1.99
1023984--1024241	61	4.4	58	82	10	314	26	27	20	25	1.99
1023984--1024238	116	2.2	114	82	10	313	26	27	20	25	1.99
1023719--1024506	272	2.9	271	87	5	1075	25	27	19	26	1.99
1024065--1024446	211	1.8	210	88	4	581	25	28	20	25	1.99
1024262--1024561	55	5.3	54	80	14	286	26	26	21	26	2.00
1024261--1024561	116	2.6	114	83	8	376	26	26	21	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1024582--1024776	61	3.3	58	79	12	222	27	25	20	26	1.99
1024759--1024865	45	2.4	45	90	0	169	22	27	13	37	1.91
1024955--1025043	42	2.1	43	83	8	110	16	22	12	48	1.80

Tables:   1   2   3   4   5   6   7

The End!