genome.fa.s285.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold285
Parameters: 2 7 7 80 10 50 1000
Length:  926752

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 631 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100379--100407	3	9.7	3	100	0	58	31	0	0	68	0.89
102155--102201	19	2.6	18	83	9	69	59	0	0	40	0.97
102399--102430	2	16.0	2	93	0	55	46	0	0	53	1.00
106041--106065	2	12.5	2	100	0	50	0	48	0	52	1.00
106096--106129	2	17.0	2	100	0	68	50	0	0	50	1.00
107525--107590	6	11.0	6	75	18	66	62	0	0	37	0.96
107528--107604	16	4.8	16	75	13	70	58	0	0	41	0.98
108167--108240	37	2.0	36	84	7	96	45	0	1	52	1.09
108504--108659	19	8.8	17	72	15	70	62	1	0	36	1.04
108535--108659	38	3.4	36	75	21	100	63	1	0	35	1.04
108541--108658	9	12.8	9	72	20	84	64	1	0	33	1.04
108527--108659	19	7.2	20	71	21	87	63	1	0	35	1.04
108630--108699	17	4.1	17	71	12	54	51	2	0	45	1.16
116248--116294	2	23.5	2	95	0	85	53	0	0	46	1.00
117569--117598	14	2.1	14	100	0	60	80	0	20	0	0.72
117796--117838	21	2.0	21	86	8	61	53	2	2	41	1.26
118377--118430	27	2.0	27	85	3	72	38	3	0	57	1.17
118504--118538	13	2.7	13	86	0	52	45	0	2	51	1.16
118722--118781	30	2.0	29	84	9	77	43	1	1	53	1.20
119881--119926	2	23.0	2	95	0	65	43	0	6	50	1.28
123664--123694	16	1.9	16	93	0	53	74	0	0	25	0.82
124564--124601	2	19.0	2	94	0	67	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126384--126423	13	2.9	15	82	14	50	45	0	0	55	0.99
126356--126438	22	3.9	22	76	17	70	50	1	0	48	1.08
126915--126953	3	13.0	3	100	0	78	66	0	0	33	0.92
132625--132655	3	10.3	3	100	0	62	67	0	32	0	0.91
133378--133424	23	2.0	22	84	8	58	59	2	0	38	1.09
133586--133640	26	2.0	28	89	6	87	56	0	0	43	0.99
138920--139003	42	2.0	42	90	0	132	45	21	15	17	1.85
142110--142154	17	2.6	18	86	6	58	35	0	0	64	0.94
142131--142173	12	3.6	12	84	9	61	27	0	0	72	0.85
142126--142178	24	2.2	24	87	9	74	32	0	0	67	0.91
142470--142504	17	2.1	17	89	5	54	28	0	0	71	0.86
142471--142506	18	2.0	18	94	0	63	30	0	0	69	0.89
142623--142653	2	15.5	2	100	0	62	51	0	0	48	1.00
143496--143550	2	27.5	2	96	0	101	52	0	47	0	1.00
149783--149822	19	2.1	19	86	9	55	52	0	5	42	1.23
149816--149861	15	3.1	15	75	12	51	50	0	0	50	1.00
150107--150153	23	2.0	24	83	8	60	59	0	0	40	0.97
151101--151154	24	2.2	26	75	21	62	55	0	1	42	1.10
151115--151163	24	2.0	24	92	0	80	57	0	0	42	0.99
152129--152169	12	3.3	12	80	6	55	58	0	0	41	0.98
152524--152589	34	2.0	34	85	5	91	33	13	9	43	1.76
152899--152951	16	3.2	16	72	27	56	30	0	0	69	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152903--152948	7	6.7	7	76	14	51	26	0	0	73	0.83
152881--152951	34	2.1	34	84	5	90	32	1	1	64	1.11
152900--152962	21	3.0	21	70	21	51	31	0	0	68	0.90
153330--153381	15	3.3	15	76	10	59	51	0	0	48	1.00
153315--153384	15	4.8	15	73	16	58	50	0	0	50	1.00
153440--153489	21	2.3	21	76	10	57	44	2	0	54	1.11
155462--155506	6	7.3	6	82	5	54	35	0	4	60	1.17
155564--155600	19	1.9	19	88	0	56	35	0	0	64	0.94
159132--159165	17	2.1	17	88	5	52	14	0	5	79	0.91
163110--163157	24	2.0	24	84	8	62	54	2	0	43	1.12
163142--163172	10	3.1	10	95	0	53	64	0	0	35	0.94
170021--170073	5	10.4	5	79	16	56	67	0	0	32	0.91
170017--170078	31	2.0	31	87	6	90	69	0	0	30	0.89
170026--170075	25	2.0	25	92	7	84	70	0	0	30	0.88
170921--170951	9	3.4	9	90	0	53	48	9	19	22	1.78
171427--171466	21	1.9	21	94	0	71	50	5	0	45	1.23
174844--174934	42	2.2	42	81	0	110	39	13	27	19	1.89
175122--175189	31	2.2	31	97	2	129	25	16	8	50	1.73
177512--177550	16	2.4	16	86	0	51	53	0	5	41	1.23
179018--179108	32	2.8	31	75	11	76	60	0	0	39	0.97
179114--179180	22	3.2	21	75	10	57	53	1	0	44	1.09
180080--180260	36	5.1	36	90	4	296	38	20	16	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184464--184512	21	2.3	22	79	10	57	46	2	0	51	1.12
188978--189173	48	4.1	48	91	0	311	18	20	28	32	1.96
189210--189328	24	4.8	24	78	10	132	11	27	30	30	1.92
189249--189302	27	2.0	27	85	0	72	12	27	31	27	1.93
189196--189322	51	2.6	47	84	9	157	11	28	29	30	1.91
189196--189320	24	5.0	26	72	16	95	11	28	28	31	1.91
191866--191910	22	2.0	24	86	8	67	40	0	15	44	1.47
193175--193208	11	3.2	10	91	8	50	55	0	0	44	0.99
202352--202424	27	2.8	25	71	21	60	45	1	1	52	1.18
205719--205769	20	2.6	19	82	11	59	52	0	3	43	1.19
206407--206441	14	2.4	15	85	4	54	57	0	0	42	0.99
206901--206941	18	2.2	20	91	8	68	51	0	0	48	1.00
206891--206942	23	2.3	22	80	3	59	51	0	0	48	1.00
207957--208005	23	2.2	22	85	3	62	55	2	0	42	1.11
208749--208792	17	2.6	18	74	25	51	59	11	0	29	1.32
209185--209221	19	2.1	18	90	10	58	32	0	0	67	0.91
210803--210845	16	2.9	15	82	6	52	32	6	0	60	1.23
212934--213078	29	5.0	29	69	16	93	45	5	17	31	1.71
214313--214371	27	2.3	27	88	5	86	49	0	0	50	1.00
217274--217311	15	2.7	14	80	11	51	42	0	0	57	0.98
217907--218097	97	2.0	95	86	4	267	41	17	5	35	1.73
218710--218752	21	2.1	21	87	8	63	51	4	0	44	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
218721--218784	29	2.2	29	85	0	83	51	1	1	45	1.20
219346--219399	16	3.4	16	74	20	51	57	1	0	40	1.09
222665--222709	22	2.0	22	83	8	56	33	0	2	64	1.06
222798--222848	21	2.5	20	81	9	57	60	0	0	39	0.97
226434--226475	2	21.5	2	80	4	50	45	2	2	50	1.27
229531--229560	16	1.9	16	93	6	53	40	0	0	60	0.97
230096--230130	6	5.8	6	86	0	52	34	0	0	65	0.93
230096--230134	12	3.2	12	88	3	51	35	0	0	64	0.94
230211--230252	23	2.0	23	86	13	63	33	0	2	64	1.07
239560--239612	17	3.3	15	77	15	52	49	5	3	41	1.44
246612--246655	17	2.6	17	79	13	54	45	0	2	52	1.13
246698--246762	29	2.4	27	76	19	64	53	1	0	44	1.09
251715--251741	2	13.5	2	100	0	54	51	0	0	48	1.00
254533--254588	27	2.1	27	96	0	103	37	17	16	28	1.91
255566--255599	18	1.9	17	94	5	59	55	0	0	44	0.99
255842--255884	14	2.9	14	86	6	59	76	0	0	23	0.78
255832--255882	22	2.3	22	89	0	75	76	1	0	21	0.88
255844--255884	8	5.4	8	85	11	59	75	0	0	24	0.80
256828--256903	35	2.2	35	90	0	89	31	7	19	40	1.80
260848--260876	14	2.0	15	93	6	51	34	0	10	55	1.34
263525--263576	21	2.7	20	80	17	56	53	1	0	44	1.11
263521--263591	26	2.7	26	77	18	76	53	1	0	45	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264874--264927	22	2.5	20	79	8	63	46	1	0	51	1.11
264874--264937	22	3.0	21	70	19	51	46	1	0	51	1.10
265297--265323	2	13.5	2	100	0	54	51	0	0	48	1.00
265402--265442	2	20.5	2	100	0	82	51	0	0	48	1.00
266777--266804	1	28.0	1	100	0	56	0	0	0	100	0.00
267981--268027	22	2.1	22	88	7	69	21	27	8	42	1.81
267962--268336	198	1.9	198	88	2	565	22	26	15	35	1.94
269377--269446	35	2.0	35	91	0	113	38	7	14	40	1.73
272719--272752	6	5.5	6	89	3	50	35	0	0	64	0.94
272714--272752	19	2.1	18	90	4	60	35	0	2	61	1.10

Tables:   1   2   3   4   5   6