genome.fa.s285.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold285
Parameters: 2 7 7 80 10 50 1000
Length:  926752

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 631 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273615--273661	15	3.2	15	82	14	62	55	2	0	42	1.12
274444--274494	26	2.0	26	84	7	68	33	7	1	56	1.39
274424--274515	16	5.7	16	78	1	94	32	4	1	61	1.22
274907--274944	2	19.0	2	100	0	76	50	0	0	50	1.00
275162--275379	34	6.4	34	85	2	278	25	7	26	40	1.82
275162--275379	102	2.1	101	91	1	355	25	7	26	40	1.82
275685--275747	19	3.3	19	90	0	90	28	17	19	34	1.94
279813--280031	34	6.5	34	85	2	280	25	7	26	40	1.82
279813--280031	102	2.2	101	91	1	357	25	7	26	40	1.82
280426--280470	2	24.0	2	82	13	60	51	0	0	48	1.00
283874--283942	35	2.0	35	88	5	104	34	11	11	42	1.78
289643--289703	31	1.9	32	83	6	79	42	0	4	52	1.23
291812--291980	38	4.5	38	80	1	160	38	20	13	27	1.90
291889--292073	76	2.4	76	82	4	230	34	19	14	31	1.91
291837--292073	38	6.3	37	78	5	181	34	19	15	30	1.93
297722--297810	36	2.5	36	83	9	110	57	0	0	42	0.98
297769--297801	15	2.2	15	94	0	57	54	0	0	45	0.99
297797--297842	13	3.3	14	81	9	58	65	0	0	34	0.93
300873--300911	2	19.5	2	89	0	60	48	0	2	48	1.15
303197--303244	25	2.0	24	91	4	78	41	0	0	58	0.98
303203--303259	25	2.3	25	78	6	62	45	0	0	54	0.99
303216--303283	33	2.0	33	82	8	82	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
304422--304472	22	2.3	21	78	21	52	58	0	1	39	1.09
308766--308845	36	2.2	37	82	10	96	56	0	1	42	1.07
308787--308832	23	2.0	22	83	4	56	58	0	0	41	0.98
309836--309875	18	2.3	18	86	4	55	40	0	0	60	0.97
310850--310886	5	7.4	5	87	0	56	48	0	0	51	1.00
310850--310890	20	2.0	20	95	0	73	48	0	0	51	1.00
311987--312050	5	13.2	5	72	18	55	40	1	0	57	1.08
311987--312037	19	2.7	19	80	14	61	41	1	0	56	1.10
311982--312050	14	4.8	14	74	16	61	42	1	0	56	1.08
312960--312985	2	13.0	2	100	0	52	50	0	0	50	1.00
313477--313510	2	17.0	2	100	0	68	0	50	0	50	1.00
315985--316037	20	2.5	20	84	6	61	62	1	0	35	1.06
315986--316026	11	3.7	11	78	21	50	65	0	0	34	0.93
318105--318136	13	2.4	14	90	10	50	65	0	0	34	0.93
318208--318248	11	3.5	12	80	12	50	29	0	0	70	0.87
319293--319380	11	7.5	12	75	9	58	48	1	3	46	1.26
319324--319382	25	2.3	26	80	16	70	52	1	3	42	1.28
320292--320385	16	5.7	16	82	5	107	35	0	3	61	1.12
320356--320405	25	2.0	25	84	7	66	48	0	0	52	1.00
323635--323662	2	14.0	2	100	0	56	50	0	0	50	1.00
323662--323686	2	12.5	2	100	0	50	0	48	0	52	1.00
327859--327885	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328295--328331	15	2.4	16	90	4	58	70	0	0	29	0.88
328668--328697	3	10.0	3	100	0	60	33	0	0	66	0.92
338319--338359	3	13.7	3	100	0	82	31	0	0	68	0.90
360058--360087	2	15.0	2	100	0	60	50	0	0	50	1.00
360280--360307	2	14.0	2	100	0	56	50	0	0	50	1.00
361989--362029	21	2.0	21	100	0	82	48	0	0	51	1.00
362012--362040	13	2.2	13	100	0	58	58	0	0	41	0.98
362463--362503	18	2.2	18	86	4	55	39	0	0	60	0.96
363220--363246	5	5.4	5	100	0	54	40	0	0	59	0.98
363721--363761	11	3.4	12	83	10	57	65	0	2	31	1.05
363741--363811	37	2.0	36	83	8	92	53	0	0	46	1.00
363886--363927	21	2.0	21	86	13	61	40	0	0	59	0.97
363930--363961	14	2.3	14	94	0	55	50	0	0	50	1.00
365574--365637	24	2.6	24	78	7	67	32	4	18	43	1.71
368246--368291	21	2.1	22	84	4	58	30	19	30	19	1.97
386731--386797	26	2.6	26	83	4	91	29	5	23	40	1.79
389828--389874	2	23.5	2	100	0	94	48	0	0	51	1.00
393418--393461	2	22.0	2	95	0	79	47	0	50	2	1.13
393738--393770	12	2.7	13	90	9	52	36	0	0	63	0.95
395407--395460	21	2.6	21	82	2	74	35	0	7	57	1.27
395645--395676	3	10.7	3	93	0	55	68	3	0	28	1.04
396246--396270	13	1.9	13	100	0	50	44	8	16	32	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396313--396337	13	1.9	13	100	0	50	40	0	0	60	0.97
396935--396982	3	16.0	3	95	0	87	64	0	2	33	1.05
397786--397819	10	3.5	10	84	8	52	61	2	0	35	1.11
397744--397828	30	2.8	29	76	5	71	52	3	4	38	1.39
402319--402536	109	2.0	109	95	0	391	27	17	16	39	1.90
405549--405575	14	1.9	14	100	0	54	59	3	0	37	1.15
406207--406266	30	2.0	30	96	0	111	36	5	13	45	1.65
406308--406369	32	1.9	32	83	0	79	45	0	3	51	1.17
406378--406423	3	15.3	3	100	0	92	32	0	0	67	0.91
406776--406824	18	2.8	18	81	3	64	48	0	0	51	1.00
406776--406824	9	5.6	9	80	4	55	48	0	0	51	1.00
406779--406838	16	3.6	16	79	6	57	51	0	0	48	1.00
409669--409715	17	2.8	18	81	9	55	31	4	2	61	1.27
412642--412673	2	16.0	2	100	0	64	50	0	0	50	1.00
413131--413171	20	2.1	20	86	13	59	24	0	2	73	0.96
420162--420210	15	3.4	14	83	13	55	40	0	2	57	1.10
420139--420212	13	5.3	13	73	17	51	40	0	2	56	1.13
420196--420272	25	3.0	25	76	10	75	45	1	1	51	1.17
423120--423162	14	3.0	14	76	6	50	37	0	0	62	0.95
423289--423317	13	2.3	13	94	5	51	62	0	0	37	0.96
423349--423413	31	2.1	31	82	5	78	33	3	3	60	1.28
423369--423434	31	2.1	31	81	10	73	36	3	1	59	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423412--423447	17	2.0	19	89	10	58	50	0	0	50	1.00
424145--424170	13	2.0	13	100	0	52	38	0	0	61	0.96
424848--424882	10	3.6	10	88	7	54	45	0	0	54	0.99
428056--428086	2	15.5	2	100	0	62	51	0	0	48	1.00
430971--431015	2	22.5	2	100	0	90	51	0	0	48	1.00
431215--431267	2	27.0	2	88	11	83	47	1	0	50	1.12
432959--433012	28	2.0	27	85	3	72	35	0	3	61	1.14
434313--434341	2	14.5	2	100	0	58	48	0	0	51	1.00
436065--436109	23	1.9	24	82	13	58	2	53	2	42	1.25
438020--438063	21	2.2	20	83	4	52	31	0	11	56	1.35
454629--454670	22	1.9	22	85	0	57	54	0	0	45	0.99
454622--454676	13	4.0	14	81	15	62	54	0	0	45	0.99
454612--454676	24	2.5	26	75	14	71	56	0	0	43	0.99
459198--459238	21	2.0	21	100	0	82	41	9	4	43	1.59
459255--459303	23	2.1	23	85	7	64	48	0	0	51	1.00
460998--461043	12	3.6	12	78	16	56	39	13	4	43	1.63
464956--465162	79	2.6	79	83	1	245	28	16	29	24	1.97
465114--465185	28	2.6	28	86	0	90	25	19	33	22	1.97
465173--465561	52	7.4	51	70	12	234	31	13	25	29	1.94
465266--465394	51	2.5	52	82	1	152	32	14	24	27	1.95
465377--465452	27	2.8	26	88	9	100	21	22	34	22	1.97
465063--465568	263	1.9	262	89	3	784	31	14	26	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467924--467949	13	2.0	13	100	0	52	38	15	15	30	1.88
467903--467969	33	2.0	33	88	0	98	43	16	14	25	1.86
467989--468088	19	5.9	18	73	26	103	38	15	12	35	1.84
468011--468067	13	3.9	13	76	24	60	35	15	14	35	1.88
467992--468086	32	3.0	32	98	0	181	36	15	12	34	1.86
474159--474211	21	2.6	21	80	11	58	56	0	0	43	0.99
483977--484012	18	2.0	18	100	0	72	16	22	22	38	1.93
486318--486354	3	12.7	3	94	5	67	32	0	0	67	0.91
487297--487329	2	16.5	2	100	0	66	51	0	0	48	1.00
487768--487815	19	2.5	19	72	24	55	45	6	0	47	1.27

Tables:   1   2   3   4   5   6