genome.fa.s285.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold285
Parameters: 2 7 7 80 10 50 1000
Length:  926752

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 631 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487944--487968	13	1.9	13	100	0	50	44	0	0	56	0.99
487971--488043	32	2.2	32	80	11	85	52	0	2	45	1.15
495803--495859	30	1.9	30	85	7	80	40	8	7	43	1.63
499592--499635	20	2.2	20	95	0	79	52	4	6	36	1.49
501252--501294	15	2.9	16	83	13	56	69	0	0	30	0.88
503589--503792	21	10.0	21	79	8	199	41	2	2	52	1.29
503605--503809	81	2.5	81	79	8	229	40	2	2	54	1.29
503606--503761	10	15.4	10	71	18	103	41	2	0	55	1.18
503683--503773	30	3.0	30	70	12	96	43	3	3	49	1.35
503606--503781	60	2.9	60	89	3	255	42	2	1	53	1.25
503937--504153	34	6.4	34	86	0	274	26	7	25	40	1.82
503953--504151	102	2.0	102	92	0	335	26	8	24	40	1.83
508568--508785	34	6.4	34	84	0	240	26	6	25	41	1.79
508567--508786	102	2.2	102	86	0	316	27	6	25	41	1.79
511054--511088	16	2.1	17	89	10	54	68	2	0	28	1.04
511043--511114	18	3.7	20	74	12	60	65	1	1	31	1.10
511041--511105	27	2.4	26	80	19	71	67	1	1	29	1.09
511413--511458	21	2.2	20	84	3	56	50	0	10	39	1.38
511595--511628	11	3.0	11	86	4	50	52	2	0	44	1.16
516842--516891	18	2.8	18	81	0	64	42	8	10	40	1.68
518519--518566	12	3.8	12	78	10	51	47	2	0	50	1.12
518527--518566	14	3.0	14	82	10	57	42	2	0	55	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522430--522475	21	2.1	22	84	4	58	19	30	19	30	1.97
525609--525665	30	1.9	30	82	7	71	57	0	0	42	0.98
525775--525821	22	2.1	22	84	7	60	31	2	2	63	1.18
526915--526973	28	2.0	30	83	6	77	47	1	1	49	1.21
528179--528397	34	6.5	33	81	5	240	24	7	26	41	1.81
528195--528390	102	1.9	102	90	0	311	23	8	26	41	1.82
532795--533011	34	6.4	34	85	1	267	25	6	25	41	1.80
532795--533011	102	2.1	101	89	0	326	25	6	25	41	1.80
542523--542599	39	2.0	39	84	5	102	40	11	19	28	1.87
547270--547331	28	2.2	27	86	8	97	54	20	4	19	1.62
551798--551874	26	3.0	25	72	9	66	49	20	5	24	1.69
551830--551907	28	2.9	27	79	9	79	51	21	3	23	1.64
554862--554889	3	9.3	3	100	0	56	32	35	0	32	1.58
559420--559473	2	27.0	2	92	0	90	50	3	0	46	1.19
559415--559473	20	3.0	20	97	0	109	49	6	0	44	1.29
562884--563044	75	2.1	75	85	6	220	35	13	18	32	1.89
565398--565436	20	2.0	20	84	0	51	20	2	5	71	1.17
565661--565761	12	7.6	14	70	17	65	52	1	0	45	1.12
565700--565764	6	10.5	6	80	9	69	58	0	0	41	0.98
565663--565782	43	2.8	43	80	13	131	50	1	0	47	1.10
574363--574392	14	2.1	15	93	6	53	60	0	0	40	0.97
579230--579283	3	18.0	3	100	0	108	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582615--582670	28	2.0	28	100	0	112	28	7	21	42	1.79
585440--585500	20	3.0	20	83	9	61	39	0	0	60	0.97
587321--587347	2	13.5	2	100	0	54	51	0	0	48	1.00
589853--589903	2	26.0	2	84	4	68	49	3	1	45	1.32
590541--590894	179	2.0	178	96	0	645	36	19	12	31	1.88
592567--592767	67	3.0	67	90	2	341	40	21	19	17	1.91
593782--593819	14	2.6	15	79	4	51	60	26	2	10	1.43
595682--595721	19	2.1	19	86	9	55	45	5	0	50	1.23
597642--597682	22	1.9	21	85	5	55	58	0	2	39	1.11
609496--609522	2	13.5	2	100	0	54	51	0	0	48	1.00
609829--609872	3	14.7	3	95	0	79	29	0	0	70	0.88
610046--610074	2	14.5	2	100	0	58	48	0	0	51	1.00
610072--610110	4	9.8	4	100	0	78	25	0	23	51	1.49
611893--611958	2	33.0	2	84	0	87	48	3	3	45	1.33
613163--613190	2	14.0	2	100	0	56	50	0	0	50	1.00
619126--619175	22	2.2	22	78	3	55	44	0	0	56	0.99
620609--620638	14	2.1	14	93	0	51	66	0	0	33	0.92
620910--620966	26	2.2	26	84	6	71	52	1	0	45	1.11
620913--620970	21	2.7	21	74	10	55	53	1	0	44	1.10
622675--622732	30	1.9	30	82	6	73	58	3	1	36	1.25
624940--625023	5	18.2	5	71	18	58	60	0	0	39	0.97
624941--625018	19	3.8	20	78	13	72	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
624906--625019	42	2.5	44	76	13	117	59	0	0	40	0.97
624931--625015	23	3.6	23	69	13	66	58	0	0	41	0.98
626795--626831	18	2.1	17	90	5	56	54	0	2	43	1.14
626823--626875	17	3.3	17	80	17	60	66	0	0	33	0.92
626834--626963	16	8.1	16	68	19	69	60	1	0	38	1.07
627148--627202	16	3.5	16	80	2	67	52	3	0	43	1.18
627245--627316	28	2.6	28	76	6	85	45	0	2	51	1.15
632677--632730	2	27.5	2	92	3	92	48	0	1	50	1.11
635081--635154	27	2.8	25	68	11	67	45	0	0	54	1.00
635976--636007	2	17.0	2	87	12	50	50	0	0	50	1.00
638995--639040	24	1.9	23	83	16	58	43	2	4	50	1.34
639569--639608	16	2.4	17	87	8	55	50	2	0	47	1.14
641245--641272	6	4.7	6	100	0	56	14	32	35	17	1.90
643000--643027	2	14.0	2	100	0	56	50	0	0	50	1.00
648267--648311	2	22.5	2	95	0	81	48	0	2	48	1.13
650099--650131	17	1.9	17	100	0	66	48	18	6	27	1.71
650820--650852	16	2.1	16	100	0	66	39	6	18	36	1.75
655444--655496	27	2.0	27	85	7	72	52	0	0	47	1.00
656356--656416	27	2.2	28	88	8	90	44	0	0	55	0.99
656858--656926	5	14.2	5	71	17	56	42	0	1	56	1.08
656854--656923	23	3.0	23	84	14	90	44	0	1	54	1.09
656882--656925	18	2.6	16	76	13	52	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
657886--657920	18	2.1	17	89	10	54	71	0	0	28	0.86
660830--660864	15	2.2	16	95	5	63	57	0	0	42	0.99
661639--661703	23	2.7	24	79	13	80	50	0	0	49	1.00
661643--661703	24	2.5	25	81	7	81	52	0	0	47	1.00
661686--661762	19	3.9	20	70	14	61	45	2	0	51	1.14
661625--661757	40	3.4	40	71	15	125	45	1	0	53	1.09
664748--664789	15	2.8	15	85	7	50	38	0	2	59	1.10
670497--670537	20	2.0	21	85	4	57	56	2	0	41	1.13
685861--685904	14	3.2	14	84	12	56	45	0	6	47	1.29
685897--685941	22	2.0	24	86	8	67	51	0	0	48	1.00
686158--686185	14	2.0	14	100	0	56	50	0	0	50	1.00
686253--686285	16	2.1	16	88	11	50	33	12	3	51	1.54
691253--691295	17	2.5	17	88	0	68	39	0	2	58	1.11
692285--692356	23	2.9	24	75	24	69	56	0	1	41	1.07
692722--692764	22	2.0	22	86	9	61	18	6	0	74	1.04
697377--697432	23	2.5	23	77	8	62	58	5	1	33	1.31
698401--698436	7	5.4	7	93	6	58	77	11	0	11	0.99
699681--699718	3	12.7	3	100	0	76	31	0	0	68	0.90
700008--700071	20	3.3	20	71	25	57	43	0	0	56	0.99
704312--704340	2	14.5	2	100	0	58	48	0	0	51	1.00
704577--704611	17	2.1	17	94	0	61	28	20	11	40	1.87
706177--706226	21	2.3	22	86	3	66	38	0	0	62	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
711286--711344	21	2.9	21	80	11	70	47	0	0	52	1.00
711312--711363	18	2.9	17	78	13	52	44	0	0	55	0.99
711846--711896	6	8.5	6	95	0	84	3	15	64	15	1.43
713099--713144	22	2.1	22	88	4	67	58	0	0	41	0.98
713081--713134	28	1.9	28	81	7	65	53	0	0	46	1.00
715205--715263	20	2.9	19	74	18	57	45	0	1	52	1.10
723694--724002	160	2.0	154	79	7	331	33	22	23	20	1.97
725375--725461	47	1.9	44	83	6	111	40	0	2	57	1.11
725373--725497	12	10.8	12	66	23	54	43	0	1	55	1.09
725387--725497	44	2.5	44	77	16	104	44	0	1	54	1.10

Tables:   1   2   3   4   5   6