genome.fa.s293.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold293
Parameters: 2 7 7 80 10 50 1000
Length:  1704560

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  3  of  12  ( 1341 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322903--322965	32	2.0	32	84	6	83	50	15	3	30	1.60
322926--322965	16	2.5	16	88	8	55	47	17	0	35	1.48
323133--323175	20	2.1	20	82	4	50	48	0	9	41	1.35
324894--324955	21	3.0	23	75	22	64	56	0	0	43	0.99
324905--324967	30	2.1	30	82	5	74	55	4	0	39	1.21
324991--325040	16	3.1	16	75	11	57	60	6	0	34	1.21
325420--325470	14	3.6	14	89	0	75	45	1	1	50	1.24
325722--325764	15	2.9	15	86	6	52	41	0	0	58	0.98
325740--325802	33	1.9	33	87	6	92	55	0	0	44	0.99
325769--325834	20	3.2	20	80	8	71	56	0	0	43	0.99
326748--326805	26	2.2	27	81	9	75	34	1	0	63	1.04
326965--327073	36	3.0	37	75	12	95	55	1	0	43	1.10
328781--328826	23	2.1	23	88	8	69	52	0	2	45	1.13
329189--329303	59	2.0	58	89	5	178	33	22	15	28	1.95
333688--333720	5	6.6	5	92	0	57	78	0	18	3	0.87
334646--334675	14	2.2	13	94	5	51	63	0	0	36	0.95
338370--338488	61	2.0	61	93	0	202	24	10	20	45	1.81
339317--339341	13	1.9	13	100	0	50	48	8	0	44	1.32
345089--345138	22	2.3	20	83	12	64	46	2	0	52	1.12
345085--345140	23	2.5	22	86	8	78	46	1	0	51	1.11
345673--345723	16	3.1	16	82	2	66	52	1	0	45	1.12
346633--346700	17	4.1	17	81	10	70	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350055--350090	18	2.0	19	89	10	58	52	0	5	41	1.24
352524--353006	240	2.0	240	94	0	840	30	15	21	31	1.95
356158--356194	9	4.0	9	92	3	56	72	5	0	21	1.04
357848--357919	24	3.0	24	82	8	83	11	13	0	75	1.06
357901--357947	21	2.2	22	77	11	53	6	12	0	80	0.88
372769--372833	26	2.4	28	80	12	73	53	6	7	32	1.54
372777--372832	27	2.2	25	83	6	67	55	7	7	30	1.54
372850--372903	26	2.0	26	82	10	65	55	1	7	35	1.39
372882--372942	27	2.2	29	88	5	90	55	4	3	36	1.38
373156--373196	21	1.9	22	95	5	75	41	14	9	34	1.79
374931--374987	30	1.9	30	85	7	80	56	1	1	40	1.20
375041--375074	13	2.5	13	90	4	50	26	2	0	70	1.01
376187--376225	2	19.5	2	83	0	51	51	7	0	41	1.31
380173--380233	31	1.9	31	83	6	77	52	4	4	37	1.45
382681--382817	73	1.9	73	84	3	186	54	8	10	26	1.63
383535--383570	2	18.0	2	100	0	72	50	0	0	50	1.00
385847--385882	2	18.0	2	100	0	72	50	0	0	50	1.00
387681--387715	2	17.5	2	100	0	70	51	0	0	48	1.00
387946--388015	18	4.1	17	71	19	56	41	0	1	57	1.08
387981--388046	8	7.7	9	72	26	54	33	1	0	65	1.02
387963--388036	7	9.8	8	75	15	52	36	0	1	62	1.04
387981--388022	18	2.3	18	80	8	50	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387946--388036	8	11.7	7	72	16	56	37	0	1	61	1.03
387946--388018	32	2.2	33	83	7	96	39	0	1	58	1.06
388000--388082	27	3.3	23	75	17	69	31	2	3	62	1.25
387998--388082	22	3.5	22	73	23	64	31	2	3	62	1.25
388247--388462	34	6.4	34	88	1	292	24	7	27	40	1.83
388247--388464	67	3.2	67	88	1	319	24	7	27	40	1.82
388768--388824	19	3.0	19	86	0	78	33	17	15	33	1.92
388769--388831	19	3.3	19	82	8	74	30	17	17	34	1.93
392897--393114	34	6.5	34	88	1	296	24	7	27	40	1.82
392897--393116	67	3.3	67	88	1	323	24	7	27	40	1.82
393660--393731	32	2.2	33	87	5	101	41	1	0	56	1.07
393660--393746	33	2.6	34	83	9	106	40	1	0	58	1.05
393661--393746	18	4.9	18	72	17	74	40	1	0	58	1.06
393713--393774	14	4.8	13	77	18	67	32	0	0	67	0.91
393693--393789	33	2.7	36	81	15	119	32	0	0	67	0.91
393691--393799	19	5.4	20	71	20	75	33	0	0	66	0.99
393713--393791	24	3.3	24	77	15	76	31	0	0	68	0.90
402989--403065	20	3.8	20	79	6	75	44	9	11	35	1.73
405502--405543	22	1.9	22	85	9	59	40	0	7	52	1.29
405829--405912	19	4.3	19	75	14	73	47	1	1	50	1.16
405836--405921	13	6.5	13	79	14	86	50	1	1	47	1.16
406036--406100	23	2.9	23	72	11	62	44	0	4	50	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406044--406100	29	2.0	29	82	6	71	45	0	5	49	1.24
408626--408711	26	3.4	25	78	13	86	47	22	5	24	1.73
410622--410667	21	2.1	22	88	4	67	19	28	19	32	1.96
413122--413207	27	3.4	25	76	16	77	47	20	5	25	1.72
417216--417251	15	2.3	16	95	4	65	58	0	5	36	1.22
417307--417372	26	2.7	25	80	13	68	54	1	1	42	1.18
418442--418470	3	9.7	3	100	0	58	68	0	0	31	0.89
418494--418528	2	18.0	2	94	5	63	48	0	0	51	1.00
422854--422923	24	2.8	25	89	6	99	44	25	8	21	1.80
422908--422978	27	2.6	28	90	2	108	47	23	5	22	1.72
422856--422981	24	4.9	24	78	11	92	46	25	6	21	1.74
427449--427572	27	4.8	24	74	14	88	46	25	6	21	1.75
427506--427571	27	2.4	27	90	7	98	46	22	7	22	1.77
427449--427574	24	4.9	24	76	12	92	46	24	6	22	1.75
428446--428470	2	12.5	2	100	0	50	48	0	0	52	1.00
429660--429716	27	2.0	29	83	10	73	49	7	1	42	1.40
429930--429965	17	2.1	17	90	10	56	66	2	5	25	1.27
430154--430180	12	2.2	12	100	0	54	74	0	0	25	0.83
434825--434866	16	2.6	16	82	10	50	50	2	0	47	1.14
434841--434883	17	2.4	19	77	18	56	53	4	2	39	1.34
435618--435647	2	15.0	2	100	0	60	50	0	0	50	1.00
435647--435681	2	17.5	2	93	0	61	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436592--436625	17	2.1	16	89	10	52	5	8	0	85	0.75
449142--449172	7	4.4	7	91	0	53	16	0	0	83	0.64
449140--449175	14	2.6	14	95	4	65	19	0	0	80	0.71
450356--450394	16	2.4	16	78	0	51	33	0	0	66	0.92
450811--450865	9	6.3	9	78	4	60	70	0	0	29	0.87
450809--450859	18	2.9	18	83	16	72	66	0	0	33	0.92
450809--450858	16	3.0	16	88	11	66	66	0	0	34	0.92
451030--451093	2	34.0	2	78	12	64	48	4	0	46	1.23
451626--451691	30	2.5	25	74	23	71	31	7	7	53	1.57
452056--452102	24	1.9	25	86	4	69	36	2	0	61	1.08
452112--452146	19	1.9	19	88	11	56	45	0	0	54	0.99
452271--452315	21	2.0	23	83	12	58	42	2	0	55	1.12
453922--453990	21	3.4	21	81	13	74	55	0	0	44	0.99
455044--455080	16	2.2	17	90	4	58	27	0	5	67	1.12
455044--455091	17	2.9	17	87	3	62	29	0	4	66	1.10
461992--462029	17	2.1	19	90	9	62	36	7	0	55	1.29
462655--462700	24	2.0	23	86	4	65	34	0	0	65	0.93
462834--462874	16	2.7	15	92	7	73	34	12	14	39	1.84
468303--468333	2	15.5	2	93	0	53	51	0	3	45	1.17
468304--468345	10	3.9	11	82	14	52	52	0	4	42	1.22
468333--468369	15	2.3	17	81	13	51	64	2	8	24	1.34
470832--470857	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472760--472792	14	2.4	14	94	0	57	30	12	0	57	1.35
474149--474197	21	2.4	20	86	10	64	44	0	8	46	1.33
477388--477437	12	4.3	11	78	12	55	76	0	24	0	0.80
478255--478292	17	2.2	17	86	9	51	73	2	0	23	0.95
483677--483716	20	2.0	21	90	5	64	40	0	0	60	0.97
484204--484253	21	2.3	22	80	13	59	36	0	2	62	1.07
484217--484271	22	2.6	21	81	13	60	40	1	3	54	1.28
484367--484406	14	2.9	15	78	14	50	70	0	0	30	0.88
484909--484940	2	16.0	2	100	0	64	50	0	0	50	1.00
488502--488577	34	2.4	31	89	10	118	48	6	13	31	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12