genome.fa.s293.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold293
Parameters: 2 7 7 80 10 50 1000
Length:  1704560

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  5  of  12  ( 1341 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627796--627835	22	1.9	20	85	10	53	45	0	2	52	1.14
628103--628137	3	11.7	3	100	0	70	68	0	0	31	0.90
635301--635328	5	5.6	5	100	0	56	57	0	0	42	0.99
637483--637526	18	2.5	17	85	10	61	40	6	0	52	1.28
638907--638947	21	2.0	21	90	0	64	41	21	0	36	1.54
639349--639414	6	11.3	6	73	20	52	63	0	1	34	1.04
639350--639412	17	3.6	17	81	12	74	65	0	1	33	1.03
639363--639414	22	2.2	24	83	6	63	65	0	0	34	0.93
639348--639443	18	5.7	16	74	13	68	59	1	1	38	1.11
639391--639433	22	2.0	21	90	4	68	53	2	0	44	1.13
641503--641537	18	1.9	18	88	0	52	68	0	0	31	0.90
642088--642152	33	2.0	33	87	0	94	49	4	0	46	1.22
642236--642292	23	2.5	23	82	2	71	43	0	0	56	0.99
643140--643177	14	2.5	15	87	8	51	42	0	0	57	0.98
643786--643820	3	11.7	3	100	0	70	31	0	0	68	0.90
644540--644592	23	2.3	22	87	6	70	54	1	1	41	1.22
645237--645261	2	12.5	2	100	0	50	48	0	52	0	1.00
651693--651757	22	2.9	22	77	13	62	53	1	0	44	1.09
652208--652236	9	3.0	10	90	10	51	41	0	0	58	0.98
653887--653935	15	3.1	16	79	8	55	51	2	0	46	1.12
655276--655333	19	2.7	21	76	20	57	44	0	1	53	1.10
656258--656310	24	2.2	24	80	3	63	54	0	1	43	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
656462--656513	21	2.5	21	87	3	70	42	0	11	46	1.40
656717--656774	18	3.2	17	79	11	62	55	3	1	39	1.27
656708--656764	18	2.7	21	74	25	57	54	1	1	42	1.21
658604--658750	34	4.3	34	82	0	177	44	23	3	27	1.69
658604--658751	68	2.2	68	90	0	224	45	23	3	27	1.69
659289--659318	15	1.9	16	93	6	53	66	0	6	26	1.16
663848--664086	4	60.8	4	84	9	287	49	22	0	28	1.50
666684--666733	21	2.5	20	84	12	68	40	2	4	54	1.31
666683--666729	19	2.5	20	83	13	64	38	2	4	55	1.31
666937--666985	18	2.6	19	81	15	57	53	0	4	42	1.20
666935--666960	2	13.0	2	100	0	52	50	0	0	50	1.00
666973--667028	29	2.0	28	89	10	87	64	0	3	32	1.11
666947--667022	16	4.9	16	70	23	54	59	0	3	36	1.16
666968--667069	40	2.5	42	79	11	102	58	0	1	39	1.09
667001--667080	32	2.4	33	83	6	108	57	0	1	41	1.07
667018--667090	16	4.5	17	74	25	54	56	0	0	43	0.99
667019--667077	17	3.5	19	75	25	62	55	0	0	44	0.99
669314--669404	42	2.2	42	84	4	112	47	2	4	46	1.35
673259--673333	27	2.8	27	83	0	96	26	8	17	48	1.75
675801--675846	21	2.1	22	84	4	58	30	19	30	19	1.97
677724--677797	27	2.7	28	81	6	98	29	4	17	48	1.65
678756--678792	2	18.5	2	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678823--678887	28	2.4	27	77	10	69	40	4	13	41	1.66
679051--679088	21	1.9	19	85	15	51	34	0	2	63	1.09
680487--680541	2	27.5	2	84	0	74	54	0	0	45	0.99
681154--681185	2	16.0	2	100	0	64	50	0	0	50	1.00
686291--686327	12	2.9	13	88	8	58	89	0	10	0	0.49
686291--686327	19	1.9	19	94	0	65	89	0	10	0	0.49
688037--688062	13	2.0	13	100	0	52	30	0	0	69	0.89
688992--689051	11	5.4	11	76	4	57	28	0	1	70	0.97
689011--689045	17	1.9	19	88	11	56	28	0	0	71	0.86
689037--689075	20	2.0	20	89	0	60	41	0	2	56	1.13
689298--689361	32	2.0	32	84	3	83	29	4	12	53	1.59
691643--691690	19	2.4	18	80	16	51	54	0	0	45	0.99
692466--692501	2	18.0	2	94	0	63	0	47	0	52	1.00
692469--692507	12	3.2	12	92	0	60	0	41	0	58	0.98
692584--692705	5	25.6	5	71	15	82	42	1	1	54	1.20
692579--692668	21	4.0	24	74	20	88	42	1	2	54	1.20
692576--692705	38	3.3	41	81	12	114	43	1	1	53	1.19
692616--692693	2	43.5	2	68	25	50	43	1	0	55	1.08
692616--692693	11	7.3	11	74	21	67	43	1	0	55	1.08
693667--693709	20	2.1	21	86	4	61	44	0	0	55	0.99
695165--695225	33	1.9	31	87	12	88	26	8	18	47	1.76
696069--696105	2	19.0	2	94	5	67	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
696068--696105	19	2.0	19	100	0	76	52	0	0	47	1.00
696071--696104	17	2.0	17	100	0	68	52	0	0	47	1.00
696232--696275	2	23.0	2	88	9	65	47	2	0	50	1.13
697353--697392	15	2.5	17	88	8	57	45	2	0	52	1.14
697475--697506	14	2.1	16	88	11	50	43	6	0	50	1.27
704596--704633	10	3.6	11	82	10	53	18	7	0	73	1.06
708786--708906	52	2.4	51	83	4	145	33	14	24	26	1.94
708838--709540	79	8.9	79	93	0	1120	31	15	26	27	1.95
709469--709595	53	2.5	51	85	12	163	29	14	27	28	1.95
710824--710950	62	2.1	62	88	4	186	20	29	5	44	1.74
710816--711016	35	6.2	34	75	18	189	20	28	5	45	1.73
710816--711018	97	2.1	96	96	0	370	20	29	5	44	1.73
712598--712643	24	1.9	24	86	8	67	41	15	17	26	1.88
713520--713765	81	3.0	81	99	0	483	30	8	19	41	1.81
725639--725680	17	2.4	18	76	11	52	21	0	16	61	1.34
728275--728408	33	4.1	33	79	12	152	44	0	2	52	1.18
728307--728796	23	22.9	21	65	21	100	45	2	3	48	1.33
728306--728446	63	2.2	65	82	8	164	46	2	2	48	1.25
728534--728575	11	3.8	11	87	6	50	45	0	2	52	1.13
728482--728605	54	2.2	54	75	16	121	42	1	5	50	1.35
728555--728616	22	2.7	23	76	14	65	43	3	3	50	1.34
728697--728816	11	10.6	11	70	20	70	46	0	0	52	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
728712--728778	7	9.4	8	71	27	53	50	0	0	49	1.00
728683--728814	41	3.2	40	73	14	108	46	0	0	51	1.11
728712--728782	16	4.3	16	73	19	58	50	0	0	49	1.00
728719--728766	13	3.5	13	85	8	51	50	0	0	50	1.00
728723--728843	34	3.5	33	77	17	113	47	0	0	52	1.06
728701--728786	19	4.8	19	71	25	73	50	0	0	50	1.00
728745--728816	32	2.3	30	90	4	108	44	0	1	54	1.08
732700--732726	7	3.9	7	100	0	54	14	0	0	85	0.61
733816--733859	23	1.9	23	86	9	63	54	4	0	40	1.21
734514--734564	23	2.2	22	82	6	57	60	1	0	37	1.08
736019--736071	19	2.7	18	75	16	52	43	0	1	54	1.11
736135--736174	2	20.0	2	100	0	80	50	0	0	50	1.00
736216--736257	10	4.1	10	84	6	57	47	2	9	40	1.49
736229--736262	11	3.2	11	83	8	52	50	5	2	41	1.42
736223--736262	21	1.9	21	100	0	80	50	5	5	40	1.46
737297--737338	16	2.6	17	78	14	54	69	4	2	23	1.20
737877--737920	2	22.0	2	100	0	88	50	0	0	50	1.00
738754--738805	27	2.0	26	84	3	68	59	9	0	30	1.29
741668--741706	17	2.2	18	86	9	53	71	2	0	25	0.98
741624--741947	169	1.9	169	95	0	585	42	15	8	33	1.78
750978--751017	13	3.2	12	89	10	62	87	0	12	0	0.54
755151--755180	6	4.8	6	92	8	51	13	0	0	86	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
755151--755180	13	2.4	12	94	5	51	13	0	0	86	0.57
758037--758317	145	1.9	145	99	0	553	44	12	14	28	1.81
764821--764913	45	2.0	46	83	8	118	49	8	9	32	1.66
766052--766119	29	2.3	30	84	5	84	32	4	2	60	1.32
767844--767903	31	1.9	31	93	0	102	33	3	11	51	1.55
768896--769060	74	2.2	74	83	3	199	29	1	10	58	1.39
769197--769478	73	3.9	70	79	7	253	32	3	10	53	1.52
769197--769478	142	2.0	146	83	4	367	32	3	10	53	1.52
769197--769530	74	4.6	74	80	7	335	32	2	11	52	1.51
770868--771065	80	2.5	81	81	4	217	38	7	22	31	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12