genome.fa.s298.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold298
Parameters: 2 7 7 80 10 50 1000
Length:  1060864

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 780 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280947--280984	17	2.2	18	95	4	69	18	0	10	71	1.14
281575--281645	32	2.2	32	82	7	83	32	7	1	59	1.33
281594--281634	21	2.0	21	85	9	57	34	7	2	56	1.40
282488--282530	19	2.3	19	84	8	52	51	0	0	48	1.00
283019--283048	15	2.0	15	93	0	51	60	6	3	30	1.39
283592--283647	16	3.2	16	75	20	58	51	1	0	46	1.11
283588--283825	131	1.8	131	82	1	307	50	6	5	36	1.52
284269--284325	29	2.0	29	93	6	98	40	8	7	43	1.63
284543--284567	13	1.9	13	100	0	50	36	16	16	32	1.90
284553--284607	19	2.8	19	91	2	83	34	16	12	36	1.87
286253--286307	3	18.3	3	92	0	92	34	0	34	30	1.58
286732--286772	16	2.7	15	85	7	57	39	2	21	36	1.67
290833--290869	13	2.8	13	87	0	56	32	18	13	35	1.90
290993--291030	20	1.9	20	84	10	51	39	21	0	39	1.53
291649--291674	13	2.0	13	100	0	52	76	0	7	15	0.99
291689--291745	21	2.7	21	97	0	105	33	10	19	36	1.86
291801--291868	19	3.9	19	78	21	85	35	11	14	38	1.83
291822--291846	13	1.9	13	100	0	50	36	16	16	32	1.90
291803--291865	32	2.0	32	96	0	117	34	12	15	36	1.86
291904--291929	13	2.0	13	100	0	52	30	15	15	38	1.88
312721--312840	52	2.3	53	84	5	147	29	24	12	34	1.92
312824--312900	28	2.8	28	87	0	100	23	33	19	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312775--312979	107	1.9	107	83	5	261	26	27	16	29	1.96
312854--313056	79	2.6	79	83	1	237	24	30	16	29	1.97
315810--315933	62	2.0	61	95	1	221	37	12	18	32	1.88
316367--316419	19	2.7	20	79	2	72	32	18	11	37	1.87
316447--316499	20	2.7	20	91	5	81	33	13	20	32	1.91
317282--317319	18	2.2	17	90	4	58	47	0	2	50	1.15
317274--317319	9	5.1	9	78	17	51	45	0	2	52	1.13
318475--318521	21	2.2	22	85	11	62	59	0	0	40	0.97
318474--318524	22	2.3	20	81	15	57	60	0	0	39	0.97
318914--318940	2	13.5	2	100	0	54	51	0	0	48	1.00
320338--320371	2	17.0	2	93	0	59	50	2	0	47	1.16
320591--320643	21	2.6	21	80	11	56	49	0	3	47	1.19
321906--321937	16	2.0	16	100	0	64	50	0	0	50	1.00
325042--325287	82	3.0	81	85	2	332	34	12	16	36	1.87
325042--325276	80	2.9	82	84	3	314	34	12	16	37	1.86
326720--326747	13	2.2	13	100	0	56	53	0	0	46	1.00
327839--327882	5	8.4	5	80	9	52	25	0	2	72	0.96
327839--327885	11	4.4	11	83	2	60	25	0	2	72	0.96
329072--329113	22	1.9	22	100	0	84	35	4	9	50	1.56
329076--329113	11	3.5	11	92	0	67	36	2	10	50	1.51
330067--330104	12	2.7	15	80	19	55	26	0	0	73	0.83
330063--330100	13	3.0	13	85	14	53	28	0	0	71	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330151--330189	16	2.4	16	86	0	60	41	0	0	58	0.98
335019--335045	14	1.9	14	100	0	54	55	0	7	37	1.28
335191--335227	3	12.7	3	94	5	67	35	0	0	64	0.94
336068--336125	30	2.0	29	82	3	71	50	3	18	27	1.63
337098--337151	2	27.0	2	100	0	108	50	0	0	50	1.00
337772--337806	14	2.4	14	85	4	52	68	0	0	31	0.90
338433--338466	2	17.0	2	100	0	68	50	0	0	50	1.00
338485--338520	17	2.0	18	89	10	56	11	5	2	80	0.98
339210--339238	15	1.9	15	100	0	58	48	3	0	48	1.18
343089--343164	32	2.4	32	80	6	84	48	5	6	39	1.52
343295--343341	21	2.1	21	84	7	58	44	0	0	55	0.99
348716--348771	27	2.1	27	96	0	103	26	7	32	33	1.84
355859--355912	26	2.1	26	89	0	81	48	9	7	35	1.63
357038--357267	78	2.9	78	77	3	196	35	16	14	32	1.90
357275--357466	58	3.3	57	71	11	138	50	10	9	29	1.70
358332--358387	20	2.8	20	73	13	60	8	19	0	71	1.12
358766--358803	15	2.4	17	82	13	53	2	13	5	78	1.02
360855--361107	68	3.7	69	82	7	282	42	20	9	26	1.84
360931--361132	68	3.0	67	78	7	203	40	20	11	27	1.87
363175--363242	28	2.4	28	72	20	70	48	5	4	41	1.47
364894--364943	13	3.8	13	75	0	55	48	2	2	48	1.24
364911--364988	34	2.3	34	82	6	86	55	1	1	42	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365937--366006	17	4.1	17	72	20	58	48	0	1	50	1.09
366625--366721	34	2.8	34	81	7	88	48	2	0	49	1.12
366647--366723	36	2.1	36	83	11	104	48	3	0	48	1.20
366763--366800	20	1.9	20	88	0	58	55	5	2	36	1.37
371818--371854	19	1.9	19	100	0	74	83	0	0	16	0.64
372065--372136	28	2.6	28	78	8	67	54	2	0	43	1.15
373723--373755	15	2.1	16	88	5	50	33	12	15	39	1.84
373933--373984	22	2.3	24	87	9	74	67	0	0	32	0.91
373993--374041	23	2.3	23	86	10	68	46	4	8	40	1.52
375609--375638	2	15.0	2	100	0	60	50	0	0	50	1.00
376352--376389	16	2.5	15	87	8	58	44	2	0	52	1.14
377748--377790	20	2.1	20	82	4	50	39	2	0	58	1.11
377807--377853	24	2.0	24	83	8	60	46	2	2	48	1.25
378107--378153	18	2.8	17	78	9	51	72	0	2	25	0.96
378230--378290	31	2.0	31	83	6	79	59	0	3	37	1.14
381772--381807	3	12.0	3	100	0	72	66	0	0	33	0.92
382235--382300	26	2.5	26	88	11	98	37	1	0	60	1.06
383048--383107	19	3.2	19	70	15	52	43	0	1	55	1.10
383846--383887	19	2.2	19	91	8	68	52	0	0	47	1.00
386242--386285	23	1.9	23	90	9	72	45	0	2	52	1.13
391796--391854	25	2.4	25	77	8	59	47	13	3	35	1.60
391801--391868	27	2.6	27	80	11	72	50	11	2	35	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393060--393089	2	15.0	2	100	0	60	50	0	0	50	1.00
394072--394242	89	1.9	90	83	3	220	42	12	5	39	1.65
394549--394573	2	12.5	2	100	0	50	48	0	52	0	1.00
402699--402773	27	2.7	28	69	8	64	57	0	2	40	1.13
403075--403110	17	2.1	18	94	5	65	66	5	5	22	1.34
404055--404117	28	2.3	27	79	12	76	39	4	3	52	1.38
404230--404318	39	2.3	39	80	5	90	33	10	6	49	1.63
404747--404779	2	16.5	2	100	0	66	48	0	0	51	1.00
409111--409159	17	2.9	17	80	14	57	36	4	0	59	1.17
413163--413198	18	1.9	19	88	5	56	44	11	2	41	1.54
413711--413764	20	2.6	20	76	23	58	33	1	1	62	1.16
414084--414141	21	2.9	21	85	14	70	29	0	1	68	0.99
414107--414141	3	11.7	3	100	0	70	31	0	0	68	0.90
416505--416547	21	2.0	21	82	8	52	4	13	6	74	1.19
420506--420538	2	16.5	2	93	0	57	54	0	45	0	0.99
420630--420725	41	2.3	41	87	0	138	32	15	16	35	1.91
420743--420792	26	1.9	26	87	0	73	24	8	24	44	1.80
425418--425458	22	1.9	21	85	5	55	43	0	4	51	1.23
429393--429446	27	2.0	28	82	10	67	53	11	1	33	1.47
430407--430463	22	2.6	22	81	15	73	43	5	3	47	1.43
430402--430467	2	34.0	2	74	17	59	45	4	3	46	1.38
434058--434134	33	2.4	32	82	2	91	49	9	12	28	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439418--439472	20	2.8	20	83	5	67	38	14	12	34	1.84
441515--441648	64	2.1	64	97	0	250	38	19	2	40	1.64
447580--447604	13	1.9	13	100	0	50	88	0	0	12	0.53
449264--449290	14	1.9	14	100	0	54	55	0	0	44	0.99
449215--449344	30	4.5	30	67	17	96	39	0	0	60	0.97
449302--449344	16	3.0	14	78	15	52	32	0	0	67	0.91
450120--450153	16	2.2	15	89	5	50	14	0	2	82	0.79
450957--451020	33	1.9	33	84	6	85	43	4	10	40	1.61
451048--451108	30	2.1	30	81	3	70	42	0	4	52	1.23
451067--451111	21	2.1	21	87	4	63	44	0	0	55	0.99

Tables:   1   2   3   4   5   6   7