genome.fa.s298.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold298
Parameters: 2 7 7 80 10 50 1000
Length:  1060864

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 780 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
806810--806862	19	2.7	20	85	8	72	28	13	15	43	1.84
810090--810131	21	1.9	22	85	9	59	7	14	2	76	1.10
811419--811456	20	1.9	20	88	0	58	31	2	2	63	1.22
811459--811491	18	1.9	18	88	11	52	42	0	0	57	0.98
811633--811659	3	9.0	3	100	0	54	66	0	0	33	0.92
815878--815903	3	8.7	3	100	0	52	30	0	0	69	0.89
816306--816335	2	15.5	2	93	6	53	50	0	0	50	1.00
818667--818711	8	5.1	8	85	15	54	46	0	0	53	1.00
818668--818729	29	2.2	28	86	13	92	45	0	0	54	0.99
818708--818750	22	2.0	22	82	8	54	46	0	2	51	1.13
819270--819324	22	2.5	22	91	5	76	52	7	3	36	1.47
820018--820213	96	2.0	96	93	0	329	56	9	8	25	1.59
820378--820417	19	2.2	18	91	8	64	50	0	5	45	1.23
820410--820463	15	3.6	14	76	14	54	62	3	0	33	1.12
820644--820725	16	5.2	15	75	16	69	59	2	0	37	1.11
820659--820722	31	2.1	31	85	5	85	60	3	0	35	1.12
821346--821390	19	2.3	20	85	7	58	31	0	2	66	1.04
824173--824608	152	2.9	149	80	5	487	27	16	17	39	1.91
826983--827022	19	2.2	17	91	8	62	45	7	0	47	1.31
833233--833271	21	1.9	20	89	5	60	58	0	0	41	0.98
834757--834813	25	2.3	25	78	6	62	45	7	1	45	1.40
834917--834993	35	2.2	36	90	2	120	9	24	0	66	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
847547--847631	37	2.3	37	93	0	152	27	12	14	45	1.81
847990--848261	29	9.6	27	82	7	283	32	32	16	18	1.93
847991--848261	57	4.8	56	83	5	330	32	32	16	18	1.93
848322--848812	150	3.3	150	87	2	646	22	25	17	34	1.96
848322--848812	101	4.9	99	83	4	565	22	25	17	34	1.96
848322--848824	251	2.0	251	94	0	871	22	25	17	34	1.96
848799--848850	26	2.0	26	88	7	79	21	23	17	38	1.93
853578--853718	61	2.3	60	80	6	149	57	14	14	13	1.66
855623--855680	19	3.0	20	85	7	84	34	17	15	32	1.91
855664--855688	13	1.9	13	100	0	50	32	16	16	36	1.90
855645--855709	32	2.0	32	85	8	87	40	15	13	30	1.86
855921--855959	19	1.9	19	85	10	51	28	12	10	48	1.74
860815--860859	10	4.3	10	83	10	54	2	24	0	73	0.95
860963--861021	21	2.9	21	80	14	61	20	32	5	42	1.74
861204--861229	8	3.2	8	100	0	52	23	11	0	65	1.25
861216--861312	42	2.3	42	78	8	108	23	21	2	52	1.57
861235--861372	42	3.3	43	77	5	120	21	25	2	50	1.60
865552--865581	13	2.2	14	94	5	53	66	0	0	33	0.92
871236--871262	4	6.8	4	100	0	54	22	0	0	77	0.76
872807--872870	28	2.3	28	76	10	69	60	0	4	34	1.17
872878--872931	17	3.3	17	70	17	51	55	0	0	44	0.99
872862--872942	34	2.4	34	79	8	94	53	2	0	44	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
875609--875674	30	2.2	30	89	10	100	65	0	0	34	0.93
875719--875748	11	2.6	12	89	10	53	30	0	0	70	0.88
875762--875830	30	2.3	30	95	2	122	43	0	0	56	0.99
875813--875903	23	4.0	22	82	9	87	52	4	3	39	1.38
875821--875897	12	6.7	11	72	18	59	54	3	2	38	1.33
875973--876041	15	4.4	15	76	16	61	65	1	0	33	1.02
875973--876085	52	2.3	47	83	9	127	61	1	0	36	1.06
876892--876945	21	2.5	21	79	11	65	51	0	0	48	1.00
876880--876939	21	2.9	20	80	7	66	55	0	3	41	1.16
877715--877744	12	2.5	12	94	0	51	43	0	0	56	0.99
877966--878003	3	12.7	3	100	0	76	34	0	0	65	0.93
879753--879798	21	2.2	21	100	0	92	41	4	8	45	1.55
886389--886454	21	3.0	21	72	12	62	37	1	0	60	1.06
886391--886443	27	2.0	27	85	7	72	41	1	0	56	1.10
886503--886560	26	2.4	25	77	11	66	39	5	0	55	1.22
886257--886748	246	2.0	244	97	0	921	36	10	3	50	1.52
886635--886700	21	3.0	21	72	12	62	37	1	0	60	1.06
886637--886689	27	2.0	27	85	7	72	41	1	0	56	1.10
886632--886717	38	2.2	39	84	10	106	38	4	1	55	1.28
886784--886823	6	6.7	6	94	0	62	80	0	5	15	0.88
886784--886828	18	2.5	18	85	0	63	75	0	8	15	1.03
887485--887521	2	18.5	2	100	0	74	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
888323--888362	15	2.7	14	88	7	53	42	0	0	57	0.98
888327--888361	14	2.5	14	85	0	52	42	0	0	57	0.99
891022--891052	13	2.4	13	94	0	53	38	0	0	61	0.96
891334--891364	4	7.8	4	100	0	62	22	0	0	77	0.77
891837--891863	2	13.5	2	100	0	54	0	0	51	48	1.00
892376--892412	13	2.9	13	88	11	51	51	0	0	48	1.00
894965--895031	33	2.0	33	100	0	134	37	20	11	29	1.89
895582--895622	3	13.7	3	89	0	64	63	2	2	31	1.20
896413--896464	18	2.8	18	83	13	54	65	1	0	32	1.04
896413--896470	19	3.0	21	80	19	72	65	3	0	31	1.09
897359--897394	2	18.0	2	100	0	72	50	0	0	50	1.00
906399--906436	2	19.0	2	94	0	67	47	0	2	50	1.15
910912--910937	2	13.0	2	100	0	52	0	0	50	50	1.00
910937--910966	2	15.0	2	100	0	60	50	0	50	0	1.00
913489--913513	12	2.1	12	100	0	50	56	8	16	20	1.65
916071--916096	2	13.0	2	100	0	52	50	0	0	50	1.00
920345--920381	19	2.0	19	94	5	67	43	0	0	56	0.99
920453--920477	13	1.9	13	100	0	50	48	0	0	52	1.00
920979--921061	29	2.9	27	79	12	94	33	7	14	44	1.73
922679--922711	2	16.5	2	100	0	66	51	0	48	0	1.00
930734--930772	18	2.2	18	86	9	53	28	0	0	71	0.86
933258--933292	16	2.2	16	90	10	54	20	0	0	80	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
935679--935981	165	1.8	166	88	2	466	53	10	7	28	1.62
935733--936039	165	1.9	165	85	6	417	55	9	8	26	1.61
937372--937415	23	1.9	23	85	0	61	45	0	0	54	0.99
937375--937422	19	2.6	19	83	3	53	43	0	2	54	1.12
938399--938455	27	2.1	28	83	3	71	21	15	5	57	1.57
938962--939012	22	2.3	22	89	0	75	41	25	13	19	1.88
944432--944472	21	2.0	21	85	9	57	43	7	7	41	1.60
944591--944615	13	1.9	13	100	0	50	36	16	16	32	1.90
944570--944634	33	2.0	32	90	3	103	33	15	12	38	1.85
944681--944735	20	2.7	21	89	10	80	38	10	18	32	1.85
944984--945055	34	2.1	35	84	2	92	18	13	11	56	1.66
947871--947922	15	3.2	16	78	13	54	38	1	0	59	1.08
953388--953421	6	5.7	6	92	0	59	2	14	32	50	1.58
955055--955091	2	18.5	2	100	0	74	0	51	0	48	1.00
956067--956096	2	15.0	2	100	0	60	50	0	0	50	1.00
957009--957046	2	19.0	2	100	0	76	50	0	50	0	1.00
957916--957952	3	12.3	3	100	0	74	67	0	0	32	0.91
960877--960906	2	15.0	2	100	0	60	50	0	0	50	1.00
961617--961649	2	16.5	2	100	0	66	51	0	0	48	1.00
963543--963578	16	2.2	16	90	0	54	50	0	2	47	1.15
964270--964296	7	3.9	7	100	0	54	44	0	0	55	0.99
964769--964809	22	1.9	21	85	5	55	60	0	0	39	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
964817--964851	16	2.2	16	89	0	52	51	2	5	40	1.40
965559--965592	18	1.9	17	88	5	50	20	2	2	73	1.09
966712--966741	2	15.0	2	92	0	51	0	46	0	53	1.00
967611--968049	218	2.0	217	91	0	707	40	15	9	34	1.80
972531--972567	15	2.5	15	90	0	56	32	0	2	64	1.07
973267--973321	28	2.0	29	82	10	71	41	1	5	50	1.36
974151--974205	18	2.8	19	75	10	58	60	0	0	40	0.97
974191--974236	24	1.9	24	81	0	56	52	8	6	32	1.58
975880--975923	13	3.3	13	80	3	52	4	13	0	81	0.83
975880--975922	21	2.0	22	86	4	61	4	13	0	81	0.84

Tables:   1   2   3   4   5   6   7