genome.fa.s298.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold298
Parameters: 2 7 7 80 10 50 1000
Length:  1060864

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 780 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
622774--622867	36	2.6	37	88	6	140	38	9	9	42	1.70
622772--622885	18	6.4	18	79	7	108	37	9	9	42	1.71
627091--627172	27	3.2	27	60	19	66	41	15	9	32	1.80
627093--627200	50	2.2	50	100	0	216	38	16	9	35	1.81
627773--627842	36	2.0	35	89	10	108	52	1	0	45	1.09
627778--627849	35	2.1	35	87	10	103	55	1	0	43	1.08
628488--628534	24	1.9	25	91	4	78	19	0	4	76	0.95
629189--629223	3	11.7	3	100	0	70	68	0	31	0	0.90
629867--629903	13	3.2	12	85	14	51	40	2	0	56	1.13
630307--630353	17	2.7	18	76	6	51	59	2	6	31	1.34
631883--632094	112	1.9	109	92	4	354	38	9	4	47	1.55
631982--632048	22	3.0	22	67	30	61	40	5	2	50	1.42
634404--634465	25	2.5	24	85	10	81	58	0	0	41	0.98
634480--634509	14	2.1	14	93	0	51	63	0	0	36	0.95
634637--634700	18	3.1	21	76	15	71	57	0	4	37	1.19
641879--641911	9	3.3	10	87	12	50	54	0	0	45	0.99
642110--642164	17	3.4	16	78	12	67	36	0	0	63	0.95
642118--642163	16	2.8	17	90	6	76	34	0	0	65	0.93
646353--646386	15	2.3	15	89	0	50	47	17	0	35	1.48
646285--646480	104	1.9	105	90	1	313	42	8	8	39	1.66
648455--648497	16	2.6	17	85	10	54	55	2	2	39	1.25
649008--649037	15	1.9	16	93	6	53	0	23	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
649420--649481	23	2.7	24	82	5	74	69	4	1	24	1.17
649420--649459	11	3.3	12	82	10	55	72	2	0	25	0.97
650358--650415	10	5.5	10	79	16	64	68	0	0	31	0.89
650362--650442	24	3.5	22	73	16	67	66	2	0	30	1.05
650367--650419	24	2.2	24	87	12	74	67	0	0	32	0.91
650362--650446	17	4.8	18	72	13	52	67	2	0	30	1.04
650543--650586	10	4.3	10	85	2	61	0	15	0	84	0.63
650547--650579	17	1.9	17	93	0	57	0	18	0	81	0.68
650761--650793	15	2.3	15	89	5	50	57	3	0	39	1.14
652312--652345	17	2.1	16	88	5	50	47	0	0	52	1.00
652346--652376	16	1.9	16	100	0	62	70	3	0	25	1.02
653386--653417	2	16.0	2	93	0	55	53	0	0	46	1.00
654113--654148	15	2.4	15	90	0	54	44	8	0	47	1.33
656432--656487	23	2.4	23	93	0	94	58	0	0	41	0.98
657150--657219	20	3.7	20	72	18	76	55	0	0	44	0.99
657122--657213	37	2.7	35	81	10	109	54	0	0	45	0.99
659156--659195	20	1.9	22	90	10	66	47	0	0	52	1.00
659256--659293	14	2.6	15	87	4	51	55	7	0	36	1.29
659464--659495	15	2.2	14	94	5	55	68	0	0	31	0.90
664867--664932	27	2.4	27	79	2	69	45	0	0	54	0.99
664884--665022	5	28.8	5	69	16	53	36	0	0	61	1.06
664896--664946	14	3.3	15	75	19	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664864--665021	16	9.5	16	70	18	67	39	0	0	59	1.07
664889--664996	32	3.2	33	76	19	100	38	0	0	60	1.03
665683--665716	11	3.0	11	86	4	50	64	0	0	35	0.94
665767--665841	19	4.2	17	77	14	71	60	0	0	40	0.97
665766--665839	10	8.3	9	75	18	57	59	0	0	40	0.97
665770--665841	27	2.8	26	83	6	83	59	0	0	40	0.97
667293--667326	13	2.6	13	90	9	52	44	0	0	55	0.99
678389--678452	28	2.3	27	82	12	85	54	17	6	21	1.64
680339--680388	18	2.6	19	81	9	57	54	0	0	46	1.00
682208--682244	2	19.0	2	94	5	67	48	0	0	51	1.00
683778--684016	119	2.0	119	96	0	442	25	12	22	39	1.89
691343--691389	15	3.1	15	76	8	51	36	10	38	14	1.81
693906--693953	21	2.3	21	75	13	53	47	2	0	50	1.12
693940--693979	20	2.0	20	90	9	64	47	0	2	50	1.14
695557--695601	19	2.4	19	78	10	56	66	2	26	4	1.22
695580--695653	12	6.2	12	73	6	60	75	1	20	2	1.00
695580--695632	11	4.8	11	81	11	56	77	1	18	1	0.96
698194--698248	24	2.3	24	87	0	74	45	7	20	27	1.77
698283--698307	13	1.9	13	100	0	50	36	16	16	32	1.90
703052--703090	20	2.1	19	85	9	53	48	10	17	23	1.78
703964--704089	20	5.8	20	75	18	81	40	11	17	30	1.85
704012--704092	40	2.0	40	88	4	119	39	11	18	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
708291--708346	20	2.8	20	83	2	69	37	14	16	32	1.88
713591--713645	21	2.7	21	77	5	60	36	12	12	38	1.82
713670--713711	21	2.0	21	95	0	75	42	11	16	28	1.84
713698--713723	13	2.0	13	100	0	52	30	15	15	38	1.88
716089--716224	51	2.6	51	84	3	184	28	25	11	34	1.91
716155--716380	80	2.8	80	84	5	246	28	26	14	31	1.95
716444--716677	79	3.0	78	75	8	215	26	25	14	32	1.95
729010--729068	11	5.5	11	85	2	66	86	11	1	0	0.65
729010--729068	19	3.2	18	83	7	73	86	11	1	0	0.65
729012--729068	29	1.9	30	92	3	98	85	12	1	0	0.66
730178--731103	55	15.9	60	84	8	1025	26	26	20	26	1.99
730178--731103	116	7.9	115	89	5	1199	26	26	20	26	1.99
730680--730765	27	3.1	27	64	15	68	25	22	20	31	1.98
730768--730855	28	3.2	28	62	20	67	27	23	19	29	1.98
731202--731305	40	2.5	41	78	7	113	22	27	13	36	1.92
731880--731934	21	2.7	21	80	5	69	34	12	14	38	1.84
731959--732000	21	2.0	21	95	0	75	42	11	16	28	1.84
731987--732012	13	2.0	13	100	0	52	30	15	15	38	1.88
734361--734549	51	3.6	51	82	2	225	30	25	11	32	1.91
734556--734731	79	2.2	79	84	3	219	28	25	15	30	1.96
734360--734655	51	5.6	51	70	15	199	29	25	12	32	1.92
734442--734910	238	2.0	238	82	5	583	27	25	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
734766--734839	28	2.6	30	85	8	93	25	32	16	25	1.96
736188--736222	15	2.3	15	95	0	61	28	28	0	42	1.56
738667--738691	12	2.1	12	100	0	50	60	0	16	24	1.36
739006--739398	164	2.4	166	80	5	413	33	18	8	39	1.81
739378--739489	39	2.9	39	77	5	111	41	11	3	42	1.58
749796--749858	33	1.9	33	87	9	94	30	12	15	41	1.85
751414--751533	20	5.5	20	72	18	105	30	16	12	40	1.85
759211--759277	37	1.9	35	88	11	102	29	25	11	32	1.92
759736--759761	13	2.0	13	100	0	52	30	15	15	38	1.88
759715--759779	32	2.0	33	90	6	105	30	13	15	40	1.86
760481--760524	21	2.1	21	83	8	54	25	31	4	38	1.76
762604--762768	84	2.0	84	82	7	201	24	19	3	52	1.62
764294--764360	37	1.9	35	88	11	102	29	25	11	32	1.92
764819--764844	13	2.0	13	100	0	52	30	15	15	38	1.88
764893--764966	20	3.7	20	82	8	78	29	17	13	39	1.88
766114--766397	110	2.6	110	79	5	358	22	30	13	33	1.93
766093--766454	27	13.1	28	77	7	267	23	30	14	32	1.94
766088--766450	110	3.3	109	77	6	356	23	30	13	32	1.93
766301--766962	28	22.5	28	76	11	241	28	29	16	25	1.97
766460--766922	32	15.4	33	80	11	316	31	29	17	21	1.96
766401--766922	60	8.7	61	81	9	408	30	30	17	22	1.96
766997--767304	48	6.5	48	87	1	374	20	28	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
774308--774347	22	1.9	22	85	10	57	42	7	22	27	1.80
780573--780609	19	1.9	19	88	0	56	40	21	5	32	1.76
782969--783025	28	2.1	27	83	9	71	38	10	8	42	1.71
786897--786949	19	2.7	20	88	2	81	35	13	18	32	1.90
794526--794657	51	2.6	51	86	2	185	43	10	15	29	1.81
794627--794696	20	3.5	20	78	1	79	41	14	10	34	1.79
797963--798015	19	2.7	20	85	8	72	28	13	15	43	1.84
798629--798709	39	2.0	40	83	6	103	33	24	6	35	1.81
798664--798804	59	2.4	59	97	0	264	31	23	6	38	1.80
800616--800653	13	2.9	13	92	0	58	34	15	15	34	1.90

Tables:   1   2   3   4   5   6   7