genome.fa.s298.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold298
Parameters: 2 7 7 80 10 50 1000
Length:  1060864

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 780 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
977025--977079	23	2.4	23	78	0	65	38	1	3	56	1.28
979180--979236	16	3.4	16	73	17	62	50	0	0	49	1.00
979136--979245	36	3.1	35	78	16	104	57	0	0	42	0.98
979150--979235	34	2.6	33	87	5	113	54	0	0	45	0.99
979168--979252	34	2.6	34	87	8	117	56	0	0	43	0.99
979803--979832	4	7.5	4	92	0	51	50	0	0	50	1.00
986706--986745	14	2.9	14	80	0	53	50	0	0	50	1.00
987933--987981	17	2.8	18	84	6	64	67	0	2	30	1.02
987917--987986	28	2.4	30	79	13	85	65	0	2	31	1.07
987933--987981	18	2.8	17	79	17	55	67	0	2	30	1.02
987914--987986	29	2.5	28	78	14	76	65	0	2	31	1.06
987914--988038	32	4.0	33	77	16	106	60	0	2	37	1.10
988026--988072	16	2.9	17	78	18	55	53	0	0	46	1.00
992021--992080	30	2.0	30	90	0	93	55	3	28	13	1.54
992143--992246	37	3.0	34	75	8	127	38	31	1	27	1.68
992215--992275	22	2.8	22	89	0	95	39	24	4	31	1.77
996770--996830	30	2.0	30	90	0	95	54	3	27	14	1.56
997593--997634	17	2.4	18	84	11	52	30	0	0	69	0.89
997600--997636	17	2.1	17	90	10	56	29	0	0	70	0.88
997610--997643	17	2.0	17	88	0	50	32	2	0	64	1.08
997631--997676	6	7.3	6	82	7	56	50	2	2	45	1.26
997676--997701	6	4.3	6	100	0	52	15	0	0	84	0.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1001664--1001871	104	2.0	104	98	0	398	38	20	8	31	1.83
1005112--1005184	2	37.0	2	83	8	87	43	4	0	52	1.20
1007508--1007553	24	2.0	23	82	4	56	41	0	0	58	0.98
1009358--1009397	2	20.0	2	100	0	80	50	0	0	50	1.00
1009766--1009790	3	8.3	3	100	0	50	36	0	0	64	0.94
1012535--1012577	21	2.0	21	90	0	68	44	6	2	46	1.43
1012599--1012678	31	2.7	30	86	7	103	45	1	1	52	1.16
1014967--1015021	28	2.0	27	86	10	76	47	0	0	52	1.00
1015300--1015336	15	2.4	16	86	13	60	27	0	0	72	0.84
1015859--1015913	22	2.6	23	78	18	66	58	0	0	41	0.98
1015865--1015913	21	2.3	21	76	16	57	57	0	0	42	0.99
1017002--1017049	22	2.2	22	84	0	60	25	2	14	58	1.48
1017028--1017168	34	4.2	34	73	7	108	31	4	19	43	1.70
1017074--1017171	33	2.9	33	71	6	90	29	5	22	42	1.75
1017478--1017521	19	2.3	19	88	0	61	36	22	6	34	1.81
1021547--1021726	34	5.7	32	72	17	146	25	6	24	44	1.76
1021586--1021733	34	4.4	34	82	5	167	23	6	26	43	1.78
1021587--1021733	67	2.2	68	92	1	242	23	6	25	43	1.78
1022312--1022507	98	2.0	98	97	0	374	32	8	14	44	1.75
1022526--1022561	2	18.5	2	94	5	65	50	0	0	50	1.00
1022897--1022960	21	3.1	21	78	10	62	68	0	0	31	0.90
1023139--1023207	25	2.8	25	73	2	68	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1024393--1024466	29	2.6	27	79	16	78	62	1	2	33	1.18
1024400--1024462	27	2.2	29	88	5	94	61	1	3	33	1.21
1024604--1024636	17	1.9	17	93	0	57	45	9	6	39	1.61
1024974--1025006	16	2.1	16	94	0	57	30	33	21	15	1.94
1026339--1026368	14	2.1	14	93	0	51	60	0	0	40	0.97
1026991--1027058	31	2.3	30	82	10	77	52	0	0	47	1.00
1027300--1027338	3	13.0	3	100	0	78	66	0	0	33	0.92
1029835--1029885	21	2.4	21	96	0	93	52	0	5	41	1.25
1030452--1030668	34	6.4	34	79	9	212	41	23	6	29	1.79
1030453--1030668	68	3.2	68	84	2	265	41	23	6	28	1.79
1041229--1041291	30	2.1	30	93	0	108	47	1	11	39	1.49
1046164--1046221	18	3.0	18	73	22	55	72	3	0	24	1.00
1046918--1046956	18	2.2	18	100	0	78	38	5	5	51	1.46
1051101--1051185	22	3.8	21	75	18	64	37	2	5	54	1.38
1051115--1051167	26	2.0	26	85	0	70	35	3	5	54	1.42
1058790--1058850	29	2.1	29	81	6	70	27	3	8	60	1.41

Tables:   1   2   3   4   5   6   7

The End!