genome.fa.s298.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold298
Parameters: 2 7 7 80 10 50 1000
Length:  1060864

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 780 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451064--451142	30	2.6	30	80	4	88	36	2	1	59	1.19
451059--451148	29	3.0	30	74	9	76	41	2	1	55	1.19
453114--453147	18	1.9	17	88	5	50	44	0	0	55	0.99
453686--453759	39	1.9	39	83	8	98	51	1	1	45	1.18
459034--459243	50	4.2	51	83	4	250	29	15	20	35	1.93
462494--462538	18	2.4	18	82	14	56	51	2	0	46	1.13
462794--462836	18	2.6	16	80	16	52	46	0	0	53	1.00
462811--462849	19	2.0	19	85	5	51	51	2	0	46	1.14
463009--463069	23	2.4	28	86	13	87	55	0	0	44	0.99
462988--463049	31	2.1	28	85	14	81	58	0	0	41	0.98
463032--463069	12	3.2	12	77	7	51	55	0	0	44	0.99
463354--463392	19	2.1	19	90	4	62	61	0	0	38	0.96
463913--463947	16	2.1	16	89	10	52	48	5	0	45	1.26
464931--464996	27	2.4	28	84	5	89	28	9	4	57	1.49
465681--465721	21	2.0	21	90	0	64	56	9	4	29	1.53
471396--471429	2	17.5	2	93	6	61	50	0	0	50	1.00
472225--472287	16	3.9	16	76	15	58	36	3	6	53	1.42
472216--472295	24	3.2	24	82	10	99	36	6	6	51	1.52
472216--472312	25	3.9	24	73	16	72	36	7	5	51	1.52
472202--472316	49	2.4	48	78	10	117	35	6	4	53	1.45
472204--472312	24	4.5	25	80	12	95	34	6	4	54	1.47
472858--472896	2	19.5	2	100	0	78	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473491--473570	22	3.5	22	73	10	70	43	3	7	45	1.50
474563--474596	2	17.0	2	100	0	68	0	50	0	50	1.00
474589--474639	20	2.7	20	81	6	52	13	23	13	49	1.78
476254--476299	2	23.0	2	100	0	92	50	0	50	0	1.00
477790--477817	2	14.0	2	100	0	56	50	0	50	0	1.00
479002--479026	2	12.5	2	100	0	50	0	0	48	52	1.00
479452--479555	34	3.1	33	87	5	145	33	7	9	49	1.64
482447--482478	15	2.1	16	88	11	50	37	15	0	46	1.46
483651--483708	21	2.8	20	82	10	64	36	1	13	48	1.53
483737--483785	10	4.9	10	78	7	55	36	0	2	61	1.08
483820--483922	11	10.4	9	70	20	57	33	6	10	49	1.64
483720--484019	21	14.6	21	71	15	164	34	5	9	51	1.55
484155--484210	20	2.7	21	83	10	71	39	0	12	48	1.41
484175--484249	21	3.6	20	78	5	78	33	4	10	52	1.55
484259--484319	21	2.8	22	73	9	54	42	9	4	42	1.59
484332--484403	20	3.6	20	81	3	83	30	0	8	61	1.26
484806--484912	21	4.8	20	73	22	74	40	0	2	56	1.20
484869--484925	11	5.4	11	83	14	75	45	0	0	54	0.99
484860--484919	30	2.0	30	87	6	86	43	0	0	56	0.99
484843--484921	30	2.7	27	73	21	79	40	0	1	58	1.06
484862--484944	21	4.0	21	83	9	98	43	2	2	51	1.27
485695--485763	32	2.2	32	81	5	77	44	21	13	20	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485713--485766	16	3.4	15	82	10	63	44	20	14	20	1.86
486625--486686	16	3.8	16	78	6	63	48	9	8	33	1.65
498341--498380	21	1.9	21	84	0	53	27	7	0	65	1.20
499100--499152	21	2.5	21	87	6	72	41	5	0	52	1.25
507613--507645	2	17.0	2	93	6	59	51	0	0	48	1.00
507771--507796	2	13.0	2	100	0	52	50	0	0	50	1.00
511556--511595	21	1.9	21	85	10	55	32	0	5	62	1.17
511767--511809	21	2.1	21	86	4	61	60	0	9	30	1.28
512203--512236	16	2.2	15	94	5	59	82	0	0	17	0.67
512214--512294	28	2.9	27	76	12	74	67	4	2	24	1.22
514290--514334	20	2.2	20	88	7	65	48	0	0	51	1.00
514311--514446	15	9.1	15	64	17	50	42	4	2	50	1.34
514290--514418	47	2.8	45	75	6	118	44	3	1	50	1.29
515360--515433	28	2.7	28	85	10	116	18	5	22	52	1.66
515355--515447	28	3.5	28	78	11	88	26	4	23	45	1.71
515405--515473	24	2.8	24	77	4	66	23	5	26	44	1.75
515520--515565	20	2.3	20	88	0	65	10	50	4	34	1.57
515956--516025	34	2.1	34	97	0	131	25	15	27	31	1.96
519983--520066	28	3.0	27	86	11	125	21	5	21	51	1.69
520153--520198	20	2.3	20	88	0	65	10	50	4	34	1.57
520485--520523	11	3.6	11	79	6	53	7	10	0	82	0.86
520483--520525	21	2.0	21	100	0	86	9	9	0	81	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522802--522848	15	3.2	15	75	6	51	55	0	0	44	0.99
525531--525568	19	2.1	19	85	5	51	5	21	0	73	1.02
527094--527173	21	3.8	21	85	12	103	32	15	13	38	1.86
527094--527173	41	1.9	42	87	10	119	32	15	13	38	1.86
527216--527282	33	2.0	33	91	0	107	35	14	19	29	1.92
527951--527981	16	1.9	16	93	0	53	48	16	6	29	1.70
529078--529128	19	2.7	19	96	0	93	39	7	11	41	1.71
530922--531525	311	1.9	311	90	0	956	30	20	12	36	1.90
531652--531778	58	2.1	60	91	5	204	34	15	13	36	1.87
534693--535592	156	5.8	155	80	6	809	24	17	20	37	1.93
534692--535592	312	2.9	311	81	3	990	24	17	20	37	1.93
535772--536061	156	1.9	156	81	4	361	23	17	20	38	1.93
544002--544054	27	1.9	28	84	3	72	45	3	7	43	1.50
546565--546786	110	2.0	110	94	0	390	54	7	7	30	1.57
547413--547448	18	1.9	19	88	5	56	41	5	2	50	1.40
549936--549986	27	2.0	25	84	7	66	72	1	1	23	1.05
550026--550067	16	2.4	18	76	11	52	69	0	0	30	0.89
550106--550154	21	2.3	21	89	3	71	79	2	2	16	0.92
550106--550156	22	2.3	22	86	6	68	78	1	1	17	0.94
550480--550535	23	2.4	24	78	3	60	46	1	0	51	1.11
550556--550589	18	1.9	17	88	5	50	26	2	0	70	1.01
558094--558260	63	2.6	64	89	0	264	16	16	26	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
565150--565197	15	3.4	15	73	21	50	43	0	0	56	0.99
565130--565190	15	3.9	16	72	12	56	39	0	0	60	0.97
565135--565182	22	2.2	21	85	3	60	37	0	0	62	0.95
565130--565195	30	2.4	28	82	14	75	40	0	0	59	0.98
565155--565262	16	6.7	17	67	17	61	45	0	0	53	1.06
565130--565195	27	2.3	30	82	14	79	40	0	0	59	0.98
565139--565294	17	9.5	17	67	16	80	41	0	0	58	1.03
565236--565294	12	5.1	12	80	15	70	32	0	0	67	0.91
566627--566670	14	2.9	15	83	10	63	54	0	0	45	0.99
567504--567532	2	15.0	2	92	7	51	51	0	0	48	1.00
569652--569678	3	9.0	3	100	0	54	33	33	33	0	1.58
571212--571249	2	20.5	2	84	15	55	52	0	47	0	1.00
572104--572133	2	15.0	2	100	0	60	50	0	50	0	1.00
574279--574325	17	2.6	17	75	21	51	46	0	0	53	1.00
576024--576063	22	1.9	20	85	10	53	52	0	0	47	1.00
578248--578273	2	13.0	2	100	0	52	50	0	0	50	1.00
580448--580506	23	2.5	24	78	8	68	10	15	0	74	1.06
583417--583450	2	17.0	2	100	0	68	50	0	0	50	1.00
584571--584607	16	2.2	18	85	9	51	43	2	5	48	1.40
589803--589853	25	2.0	24	85	11	66	27	0	3	68	1.07
593855--593922	19	3.8	18	75	9	59	38	13	20	27	1.90
596005--596048	22	2.0	22	100	0	88	31	13	13	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598664--598694	16	1.9	16	93	0	53	51	9	9	29	1.66
598725--598783	30	2.0	30	96	0	109	32	16	16	33	1.92
609477--609574	51	1.9	51	93	0	169	27	9	18	44	1.80
610202--610231	2	15.0	2	100	0	60	50	0	0	50	1.00
612789--612919	69	1.9	69	82	6	167	46	1	11	40	1.49
614482--614523	21	2.0	21	100	0	84	33	14	23	28	1.94
615490--615784	158	1.9	158	82	4	371	39	17	11	30	1.86
617568--617622	27	2.0	27	83	13	69	47	3	9	40	1.53
619482--619521	19	2.1	19	85	4	53	27	5	2	65	1.27
622794--622860	17	3.8	17	76	9	71	38	10	10	40	1.74

Tables:   1   2   3   4   5   6   7