genome.fa.s311.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold311
Parameters: 2 7 7 80 10 50 1000
Length:  800152

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 745 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427523--427554	16	1.9	17	93	6	57	56	0	0	43	0.99
427524--427585	24	2.6	24	78	12	74	58	3	0	38	1.15
427670--427704	14	2.5	14	85	0	52	51	0	0	48	1.00
427665--427719	22	2.5	22	78	3	65	54	1	0	43	1.10
427749--427806	10	6.0	9	77	20	55	55	0	0	44	0.99
428497--428540	22	2.0	22	86	0	61	65	0	0	34	0.93
429344--429377	17	1.9	18	94	5	61	32	0	0	67	0.91
429344--429395	17	3.2	17	82	15	58	34	0	0	65	0.93
434495--434528	17	1.9	18	94	5	61	32	0	0	67	0.91
434495--434546	17	3.2	17	82	15	58	34	0	0	65	0.93
434581--434640	28	2.1	29	82	14	72	50	8	11	30	1.68
439498--439529	16	2.0	16	93	0	55	25	0	15	59	1.36
439543--439573	16	1.9	16	93	0	53	16	19	25	38	1.92
442143--442180	17	2.2	18	90	4	60	47	0	0	52	1.00
442275--442323	6	7.3	7	73	17	50	53	0	0	46	1.00
442265--442318	25	2.1	26	86	3	74	53	0	3	42	1.18
442275--442321	15	3.5	15	72	24	50	55	0	0	44	0.99
442314--442366	15	3.5	15	75	10	54	41	1	1	54	1.22
444103--444133	15	2.0	16	93	6	55	58	0	0	41	0.98
444096--444141	12	3.6	12	78	16	56	52	0	0	47	1.00
445073--445111	13	3.2	13	85	7	55	41	0	0	58	0.98
445133--445181	19	2.6	18	87	6	71	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
445133--445170	10	3.9	10	82	6	51	63	0	0	36	0.95
446318--446358	15	2.6	16	88	3	57	36	0	4	58	1.20
446311--446360	8	6.4	8	75	13	50	40	0	4	56	1.18
447507--447983	88	5.4	88	85	6	587	41	8	14	36	1.75
447507--447983	174	2.7	170	84	8	552	41	8	14	36	1.75
447994--448168	91	1.9	92	86	1	253	42	9	13	34	1.77
447835--448138	155	2.0	154	82	3	369	42	9	13	33	1.78
448021--448192	92	1.9	91	83	6	213	44	8	13	33	1.74
451001--451118	20	5.9	20	79	0	146	32	12	11	43	1.79
451001--451119	40	3.0	40	93	1	195	31	12	12	42	1.80
457670--457712	13	3.3	13	81	12	52	67	2	0	30	1.03
457672--457724	25	2.1	25	82	6	63	69	1	0	28	0.99
458385--458441	28	2.0	28	93	0	96	54	14	0	31	1.40
458645--458707	23	2.8	22	80	9	65	46	0	0	53	1.00
458689--458759	25	2.9	24	71	23	58	63	1	0	35	1.03
459004--459043	14	2.9	14	82	14	55	45	2	5	47	1.38
459615--459657	22	2.0	20	86	8	59	62	0	0	37	0.95
460538--460570	13	2.5	13	90	9	50	36	3	0	60	1.12
460595--460639	22	2.1	21	84	8	56	40	0	0	60	0.97
461147--461208	27	2.2	29	75	16	67	48	3	0	48	1.17
462455--462507	22	2.4	21	79	14	54	37	0	0	62	0.96
465076--465117	2	21.0	2	90	0	66	50	4	0	45	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
468710--468742	17	2.1	16	88	11	50	36	3	0	60	1.12
474059--474121	8	7.9	8	89	0	90	44	0	6	49	1.28
474059--474121	10	6.3	10	90	0	90	44	0	6	49	1.28
474060--474121	18	3.4	18	95	0	115	43	0	6	50	1.28
474781--474837	29	2.0	29	86	10	82	45	0	3	50	1.18
475099--475127	3	9.7	3	100	0	58	0	31	0	68	0.89
475126--475162	3	12.3	3	100	0	74	32	0	0	67	0.91
479216--479257	22	2.0	21	82	13	52	35	9	9	45	1.69
479421--479473	20	2.7	20	85	5	72	35	13	18	32	1.90
481063--481103	3	13.7	3	84	0	55	41	0	31	26	1.56
481061--481095	9	3.9	9	96	0	61	42	0	31	25	1.55
481645--481715	20	3.7	19	73	12	56	77	7	0	15	0.97
482263--482352	44	2.0	44	89	0	135	38	18	23	18	1.93
482657--482737	36	2.3	36	82	2	101	45	28	12	13	1.80
483734--483762	5	6.0	5	92	8	51	17	0	0	82	0.66
484031--484059	13	2.1	14	93	6	51	79	0	0	20	0.74
492170--492223	20	2.7	20	94	0	99	27	14	12	44	1.82
492209--492235	13	2.1	13	100	0	54	29	14	14	40	1.86
492220--492275	19	2.8	20	89	2	87	30	17	16	35	1.92
492306--492356	20	2.5	20	81	6	59	37	11	17	33	1.86
493166--493201	18	2.0	18	88	0	54	38	0	2	58	1.13
496453--496915	80	5.9	79	78	7	331	29	24	9	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496453--496749	79	3.8	78	80	6	305	29	22	11	36	1.89
496477--496915	156	2.8	150	79	8	389	29	24	9	36	1.87
496554--496958	80	5.2	79	75	8	204	29	25	9	35	1.88
498976--499016	3	13.7	3	100	0	82	34	0	0	65	0.93
499378--499402	13	1.9	13	100	0	50	32	16	20	32	1.94
499473--499526	22	2.6	20	79	5	54	33	18	9	38	1.83
499451--499525	20	3.6	21	73	7	64	33	16	12	38	1.85
499755--499847	43	2.2	43	88	0	132	23	34	9	32	1.87
502840--502876	19	1.9	19	100	0	74	32	35	0	32	1.58
503526--503583	22	2.6	23	83	2	73	34	0	0	65	0.93
503526--503594	23	3.0	23	72	17	63	36	0	0	63	0.94
503598--503622	13	1.9	13	100	0	50	64	4	0	32	1.12
503765--503820	28	2.0	28	100	0	112	28	14	7	50	1.69
505548--505612	22	2.8	23	73	21	64	36	0	1	61	1.05
518271--518323	25	2.1	25	82	6	63	35	3	5	54	1.42
519363--519404	22	2.0	22	90	4	68	33	0	2	64	1.07
521044--521104	21	2.9	21	78	11	70	57	0	0	42	0.98
526139--526184	20	2.3	20	89	10	69	73	8	17	0	1.07
531812--531886	20	3.8	20	78	0	78	36	12	9	42	1.74
532794--532839	20	2.4	19	85	10	58	23	13	8	54	1.66
536138--536186	26	1.9	25	87	4	71	22	14	12	51	1.75
545087--545237	79	1.9	78	94	2	268	29	4	11	54	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
545281--545306	13	2.0	13	100	0	52	46	7	7	38	1.61
546856--546886	2	15.5	2	100	0	62	51	0	0	48	1.00
547643--547892	125	2.0	124	88	0	374	42	4	6	46	1.50
547903--547975	22	3.3	23	77	12	73	38	0	0	61	0.96
552950--553048	37	2.7	36	82	3	117	32	25	19	23	1.97
557692--557790	37	2.7	37	79	3	101	33	25	18	23	1.97
559622--559685	19	3.4	19	77	14	69	43	1	0	54	1.09
559668--559742	28	2.7	27	80	15	84	34	1	0	64	1.02
559675--559731	17	3.4	17	85	9	73	33	1	0	64	1.04
559932--559979	17	2.8	16	78	12	51	62	0	0	37	0.95
559929--559984	19	3.1	19	80	15	64	58	0	0	41	0.98
560339--560390	2	26.5	2	84	3	70	55	0	0	44	0.99
561548--561599	27	1.9	27	96	0	95	63	7	3	25	1.38
565793--565846	12	4.4	12	77	13	65	59	0	1	38	1.08
567749--567787	19	2.0	20	85	14	55	46	0	0	53	1.00
567841--567886	6	7.3	6	82	7	56	26	0	0	73	0.83
567847--567913	19	3.6	19	73	11	68	26	0	1	71	0.94
567855--567915	12	5.0	12	82	9	61	27	0	1	70	0.97
568265--568308	7	6.3	7	100	0	88	40	0	0	59	0.98
569464--569493	13	2.3	13	94	0	51	33	13	13	40	1.83
569538--569593	19	2.8	21	83	10	80	33	17	14	33	1.90
569579--569605	13	2.1	13	100	0	54	40	14	14	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
570145--570178	16	2.1	17	89	10	54	29	35	0	35	1.58
572100--572128	13	2.2	13	100	0	58	41	17	13	27	1.87
572254--572294	19	2.2	19	86	8	57	51	21	0	26	1.48
573744--573768	13	1.9	13	100	0	50	36	16	16	32	1.90
573724--573790	33	2.0	33	88	0	98	32	11	14	40	1.83
573831--573855	13	1.9	13	100	0	50	32	16	16	36	1.90
573864--573988	52	2.4	52	94	0	214	36	18	16	28	1.93
580765--580900	51	2.6	50	80	6	148	34	15	24	25	1.95
580832--581338	79	6.4	79	90	1	811	33	14	25	27	1.94
580835--581338	236	2.1	237	91	0	821	33	14	25	27	1.94

Tables:   1   2   3   4   5   6   7