genome.fa.s311.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold311
Parameters: 2 7 7 80 10 50 1000
Length:  800152

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 745 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582515--582553	18	2.2	18	85	0	51	17	35	0	46	1.49
582549--582667	35	3.4	35	89	5	188	20	31	5	42	1.76
582609--582673	14	4.1	14	72	24	58	21	35	6	36	1.79
582609--582713	49	2.1	49	91	3	167	20	33	6	40	1.78
582644--582673	14	2.1	14	100	0	60	23	40	6	30	1.80
583336--583467	42	3.2	41	77	12	137	39	12	28	18	1.88
583451--583683	61	3.9	60	86	4	328	30	20	23	25	1.99
583512--584073	214	2.6	212	88	5	796	27	19	27	25	1.99
583713--583917	60	3.5	60	83	7	246	25	19	29	25	1.98
583783--584334	155	3.6	155	87	7	777	25	18	30	25	1.98
584094--584204	55	2.0	55	92	3	188	23	20	29	26	1.99
584149--584401	101	2.5	100	90	1	391	26	17	30	25	1.97
584001--584488	256	1.9	247	90	5	782	25	18	30	26	1.98
584351--584742	115	3.5	114	89	4	582	25	20	26	27	1.99
584350--584773	170	2.5	169	86	8	578	25	20	27	27	1.99
584350--584742	55	7.0	54	84	9	500	25	20	26	27	1.99
590122--590188	33	2.0	33	85	0	89	34	10	13	41	1.79
590142--590166	13	1.9	13	100	0	50	36	16	16	32	1.90
590229--590253	13	1.9	13	100	0	50	32	16	16	36	1.90
590262--590386	52	2.4	52	94	0	214	36	18	16	28	1.93
595560--595605	16	2.7	18	83	12	62	80	13	6	0	0.89
595562--595612	23	2.3	23	89	3	77	82	7	9	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
596535--596863	30	10.8	30	78	13	316	24	27	17	29	1.98
596535--596862	62	5.4	62	88	6	447	24	27	17	29	1.98
596902--597421	27	16.9	28	74	15	310	20	35	13	30	1.91
596865--597437	34	18.3	33	74	16	399	20	35	13	30	1.91
596902--597393	94	5.3	90	77	15	389	20	36	13	30	1.91
596865--597393	125	4.2	126	82	8	639	20	35	13	30	1.91
596865--597393	65	8.4	64	81	11	560	20	35	13	30	1.91
596928--597455	250	2.1	249	93	1	896	20	35	13	30	1.92
597273--597534	29	8.7	28	72	17	82	24	31	15	28	1.96
596865--597483	155	3.9	154	80	10	643	21	34	14	30	1.92
596865--597482	216	2.8	210	78	12	475	21	34	14	29	1.92
597421--597628	88	2.4	87	83	4	251	28	26	18	26	1.98
597636--597710	35	2.2	34	82	2	96	24	29	9	37	1.86
597787--598207	49	8.7	49	83	4	525	26	26	17	29	1.97
597787--598207	98	4.4	98	88	3	595	26	26	17	29	1.97
598220--598346	67	1.9	68	86	1	184	23	25	12	38	1.90
599226--599365	52	2.7	52	81	6	176	35	15	16	33	1.90
601741--601808	19	3.9	19	78	21	85	35	11	14	38	1.83
601762--601786	13	1.9	13	100	0	50	36	16	16	32	1.90
601743--601805	32	2.0	32	96	0	117	34	12	15	36	1.86
601848--601873	13	2.0	13	100	0	52	30	15	15	38	1.88
601828--601894	33	2.0	33	88	0	98	25	14	16	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
614742--614812	1	71.0	1	78	0	70	88	5	5	0	0.62
614747--614812	21	3.2	21	83	10	84	87	6	6	0	0.65
615830--615915	27	3.1	27	62	15	68	27	30	18	23	1.98
615778--616595	55	14.4	54	83	9	861	27	28	20	24	1.99
616140--616595	116	4.0	110	85	7	468	26	27	20	25	1.99
616439--616521	27	3.0	28	64	22	75	28	31	20	19	1.97
617434--617501	19	3.9	19	74	21	76	36	11	13	38	1.81
617436--617498	32	2.0	32	93	0	108	36	12	14	36	1.84
617541--617566	13	2.0	13	100	0	52	30	15	15	38	1.88
617521--617587	33	2.0	33	88	0	98	25	14	16	43	1.86
621076--621380	79	3.9	79	91	0	484	32	14	24	27	1.95
621312--621431	51	2.4	51	94	0	204	30	13	26	29	1.94
621233--621510	130	2.1	130	91	1	441	33	14	25	27	1.94
621154--621554	209	1.9	209	91	1	660	33	14	25	27	1.94
621363--621554	79	2.4	79	92	0	312	32	14	26	27	1.95
621898--622012	35	3.3	35	89	6	180	20	31	5	42	1.74
621958--622062	49	2.1	49	89	3	167	20	33	5	40	1.77
624379--624408	13	2.3	13	100	0	60	30	13	16	40	1.87
624359--624423	33	2.0	33	88	11	98	29	18	13	38	1.89
624453--624508	19	2.8	21	79	17	73	35	16	14	33	1.88
624494--624520	13	2.1	13	100	0	54	40	14	14	29	1.86
624473--624539	32	2.1	33	91	2	109	38	17	16	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627961--627999	13	3.2	13	89	7	55	58	0	0	41	0.98
629588--629649	32	1.9	32	83	3	79	45	0	0	54	0.99
634360--634392	2	16.5	2	100	0	66	51	0	0	48	1.00
635245--635283	19	2.0	20	90	5	62	38	0	0	61	0.96
635373--635430	26	2.3	25	79	8	64	58	5	0	36	1.20
636460--636492	2	16.5	2	100	0	66	48	0	0	51	1.00
636742--636777	18	2.0	18	100	0	72	44	0	0	55	0.99
636849--636897	22	2.2	22	89	7	73	61	6	0	32	1.21
638009--638042	2	17.5	2	93	6	61	50	0	0	50	1.00
638183--638226	20	2.3	19	80	7	52	45	2	2	50	1.27
638322--638352	13	2.3	14	94	5	55	38	0	0	61	0.96
639491--639561	30	2.3	30	83	7	81	50	1	12	35	1.49
640681--641006	72	4.5	73	81	7	351	32	2	11	54	1.48
642644--642673	15	2.0	15	93	0	51	36	0	0	63	0.95
642693--642739	14	3.4	14	76	2	51	34	0	0	65	0.93
642643--642789	66	2.3	66	83	7	192	41	3	0	55	1.17
642780--642812	14	2.3	15	89	5	50	30	0	0	69	0.88
642779--642815	15	2.4	16	82	13	51	29	0	0	70	0.88
643380--643411	13	2.5	13	95	5	57	56	0	0	43	0.99
643532--643594	21	3.1	21	88	4	85	42	4	3	49	1.39
644878--644913	2	18.0	2	100	0	72	50	0	0	50	1.00
645035--645065	16	1.9	16	93	0	53	35	32	19	12	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
645034--645072	16	2.4	16	82	0	51	35	28	20	15	1.93
648062--648094	17	1.9	17	100	0	66	6	9	0	84	0.76
648504--648541	2	19.0	2	88	0	58	47	2	2	47	1.30
650070--650115	14	3.3	14	85	8	58	84	13	2	0	0.71
650202--650241	21	1.9	21	89	0	62	87	12	0	0	0.54
650201--650232	8	3.8	9	88	12	50	90	9	0	0	0.45
650024--650289	126	2.1	129	89	5	403	63	12	12	11	1.52
651514--652147	34	18.7	34	83	3	762	20	32	11	35	1.89
651514--652147	203	3.1	202	88	3	855	20	32	11	35	1.89
652227--652684	43	10.1	43	77	10	457	24	24	19	31	1.98
652177--652736	92	6.0	92	93	0	913	24	24	19	31	1.98
653539--653565	13	2.1	13	100	0	54	29	14	14	40	1.86
659693--659723	2	15.5	2	100	0	62	48	0	0	51	1.00
660655--660715	32	1.9	32	93	3	106	49	6	9	34	1.62
661377--661416	15	2.6	15	88	4	53	82	2	12	2	0.87
661777--661832	24	2.4	24	80	14	71	50	0	0	50	1.00
661790--661872	23	3.5	23	74	11	69	48	0	0	51	1.00
661790--661837	24	2.0	24	88	8	71	43	0	0	56	0.99
661848--661901	22	2.4	22	78	9	56	55	1	0	42	1.10
662611--662641	3	10.0	3	93	6	53	32	32	0	35	1.58
666328--666374	16	3.1	16	87	6	71	48	0	2	48	1.13
666351--666506	62	2.4	64	86	7	219	50	1	3	44	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
666579--666643	32	2.1	30	83	11	78	58	0	3	38	1.14
666573--666630	16	3.7	16	71	17	50	56	0	3	39	1.16
667741--667800	30	2.0	29	83	3	75	51	3	1	43	1.28
667771--667820	18	2.7	18	82	14	57	52	4	0	44	1.20
668289--668330	19	2.3	19	87	4	59	50	0	0	50	1.00
668623--668656	17	1.9	18	88	5	52	44	0	5	50	1.26
669957--670077	59	2.1	58	90	1	188	50	14	8	26	1.71
672329--672361	12	2.6	13	85	9	50	33	0	0	66	0.92
673784--673828	14	3.4	13	84	12	56	71	0	0	28	0.87
673774--673936	16	11.6	14	70	18	56	61	1	0	37	1.04

Tables:   1   2   3   4   5   6   7