genome.fa.s311.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold311
Parameters: 2 7 7 80 10 50 1000
Length:  800152

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 745 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
673778--673892	32	3.5	34	74	16	86	62	1	0	35	1.06
673813--673957	52	2.9	48	77	15	136	54	1	0	44	1.08
673808--673929	8	15.0	8	67	25	53	58	1	0	40	1.08
673775--673934	20	7.8	21	70	23	87	60	1	0	38	1.05
674901--674942	17	2.5	16	85	11	57	52	0	0	47	1.00
674872--674960	19	4.8	18	75	12	67	44	0	0	55	0.99
675305--675349	19	2.4	19	85	7	56	57	0	6	35	1.25
676139--676183	23	2.0	23	86	4	65	53	0	0	46	1.00
676182--676206	11	2.3	11	100	0	50	52	0	0	48	1.00
677211--677253	22	2.0	22	90	0	68	62	0	0	37	0.95
677282--677316	12	2.8	13	86	8	54	54	0	0	45	0.99
677237--677305	18	3.6	19	72	18	63	52	0	0	47	1.00
678061--678095	17	2.0	17	88	5	52	22	0	0	77	0.78
678059--678095	11	3.2	12	88	11	60	21	0	0	78	0.75
678578--678625	21	2.3	20	79	13	53	52	2	0	45	1.12
679035--679079	19	2.3	20	85	11	58	64	6	4	24	1.37
679992--680031	15	2.6	16	84	4	55	47	5	2	45	1.38
681256--681306	26	1.9	27	84	4	68	49	0	1	49	1.12
684580--684628	20	2.5	20	82	0	62	36	4	46	12	1.60
684728--684776	27	1.9	26	88	12	75	51	24	4	20	1.65
686654--686699	21	2.1	22	84	4	58	19	30	19	30	1.97
689152--689196	20	2.2	20	84	0	54	35	4	46	13	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689296--689344	27	1.9	26	88	12	75	51	24	4	20	1.65
690079--690117	20	2.0	20	90	5	62	46	2	17	33	1.62
690531--690564	16	2.1	17	88	5	52	61	2	0	35	1.11
692279--692358	3	26.7	3	89	0	124	30	0	3	66	1.09
694751--694790	17	2.3	18	86	4	55	72	0	0	27	0.85
696907--696953	24	2.0	24	100	0	94	34	4	17	44	1.68
697732--697797	12	5.6	12	73	10	55	60	1	1	36	1.15
697732--697803	24	3.0	24	72	9	67	59	1	1	37	1.15
698731--699064	169	2.0	168	96	0	623	32	15	8	42	1.78
699202--699298	50	2.0	49	80	11	110	51	2	0	46	1.12
699525--699621	24	4.2	24	68	27	61	50	0	0	49	1.00
699579--699619	21	2.0	20	85	4	55	56	0	0	43	0.99
700280--700341	14	4.2	14	73	18	54	53	0	0	46	1.00
700277--700342	31	2.2	30	83	5	89	54	0	0	45	0.99
700523--700550	2	14.0	2	100	0	56	50	0	0	50	1.00
700810--700888	34	2.6	29	76	18	81	62	2	0	35	1.09
701372--701412	2	20.5	2	100	0	82	51	0	0	48	1.00
701600--701652	16	3.3	16	71	10	54	47	0	0	52	1.00
702253--702291	20	1.9	20	89	5	60	51	12	0	35	1.40
705044--705084	22	1.9	21	85	14	57	58	0	2	39	1.11
706053--706083	16	1.9	16	93	0	53	19	6	29	45	1.75
706481--706523	23	1.9	22	90	4	68	65	0	2	32	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
706815--706854	19	2.1	19	90	0	62	65	0	2	32	1.06
708181--708271	25	3.7	24	77	12	62	42	2	1	53	1.20
708196--708253	25	2.3	26	90	3	91	48	0	0	51	1.00
708202--708259	25	2.4	24	80	11	73	46	0	0	53	1.00
708604--708651	24	2.0	25	83	4	62	62	0	8	29	1.24
711578--711619	17	2.5	17	96	0	75	35	19	2	42	1.64
713002--713039	17	2.2	18	90	4	60	55	2	0	42	1.14
713269--713302	3	11.0	3	93	6	59	32	0	0	67	0.91
713536--713579	14	3.1	14	87	9	54	45	0	0	54	0.99
713580--713673	13	7.7	13	68	11	56	47	0	0	52	1.00
713567--713661	46	2.1	45	94	2	163	47	0	0	52	1.00
714012--714089	15	5.2	15	78	6	68	35	0	1	62	1.03
714057--714140	6	13.5	6	68	24	50	48	2	0	48	1.14
714056--714095	21	2.1	18	86	13	53	45	0	0	55	0.99
714043--714109	31	2.2	31	84	10	84	46	0	0	53	1.00
715569--715608	12	3.2	12	85	3	53	55	0	0	45	0.99
715997--716050	28	2.0	25	86	10	72	66	0	0	33	0.92
715999--716050	13	3.9	14	78	16	56	67	0	0	32	0.91
715996--716050	25	2.2	26	84	15	73	67	0	0	32	0.91
717144--717179	17	2.1	17	89	0	54	36	8	11	44	1.70
716863--717419	289	1.9	289	89	1	857	38	12	9	39	1.76
717630--717663	13	2.5	14	90	9	61	20	26	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
720218--720262	22	2.0	22	86	0	63	44	17	0	37	1.49
723717--723754	16	2.3	17	86	9	60	52	0	0	47	1.00
723747--723776	6	5.0	6	100	0	60	33	0	0	66	0.92
725074--725119	23	2.0	23	83	8	58	36	2	0	60	1.09
728505--728581	33	2.4	32	82	2	100	51	11	9	27	1.68
730192--730231	21	2.0	20	90	5	62	52	5	7	35	1.51
738475--738504	6	5.0	6	91	0	51	13	0	3	83	0.77
738519--738550	12	2.5	13	95	5	57	53	0	0	46	1.00
738871--739117	125	2.0	125	87	1	361	46	5	6	42	1.51
743290--743325	16	2.2	16	90	0	54	47	0	0	52	1.00
743294--743322	14	2.0	15	93	6	51	51	0	0	48	1.00
744623--744656	11	3.1	11	86	0	50	58	0	5	35	1.22
744592--744662	26	2.6	27	73	13	65	60	4	2	32	1.30
745178--745237	11	5.2	11	73	16	50	70	0	0	30	0.88
745179--745224	13	3.8	12	83	11	67	71	0	0	28	0.86
745178--745235	24	2.5	24	89	10	86	70	0	0	29	0.87
745532--745597	27	2.5	26	83	11	82	53	0	0	46	1.00
745545--745595	22	2.4	21	81	15	61	52	0	0	47	1.00
745607--745644	17	2.2	18	90	4	60	36	0	5	57	1.21
746413--746477	31	2.1	32	85	2	87	53	0	7	38	1.30
746595--746644	24	2.0	25	85	11	68	64	0	0	36	0.94
746750--746788	2	19.5	2	100	0	78	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747165--747220	2	28.5	2	81	3	69	48	5	1	44	1.36
747632--747678	22	2.1	22	81	14	53	42	0	2	55	1.12
748432--748489	3	19.7	3	96	3	109	32	0	0	67	0.91
748809--748851	23	1.9	22	90	4	68	46	0	0	53	1.00
750809--750838	2	15.5	2	93	6	53	50	0	0	50	1.00
754136--754166	16	1.9	16	93	0	53	29	0	0	70	0.87
759227--759262	16	2.2	16	90	0	54	36	0	0	63	0.94
759321--759368	24	2.0	24	91	0	78	62	0	0	37	0.95
760468--760528	22	3.0	21	80	17	58	57	1	0	40	1.08
767683--767719	19	2.0	18	89	5	56	54	0	2	43	1.14
768305--768337	10	3.2	10	91	8	57	21	0	0	78	0.75
768305--768360	21	2.6	22	80	8	71	26	1	0	71	0.96
768305--768360	20	2.6	21	83	11	69	26	1	0	71	0.96
768388--768448	21	2.9	21	73	7	61	52	1	1	44	1.20
768466--768522	14	4.0	14	80	10	62	52	0	0	47	1.00
769119--769148	3	10.3	3	92	7	53	70	0	0	30	0.88
769085--769148	6	10.8	6	75	18	55	64	0	1	34	1.03
769086--769148	17	3.8	17	76	17	69	65	0	1	33	1.03
769122--769148	14	1.9	14	100	0	54	70	0	0	29	0.88
769622--769666	17	2.6	18	78	3	56	55	6	0	37	1.26
774595--774670	33	2.3	32	86	10	102	35	0	1	63	1.03
775213--775248	2	18.0	2	94	0	63	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
775312--775354	2	21.5	2	95	0	77	51	2	0	46	1.13
775312--775362	10	5.3	10	86	9	61	50	5	0	43	1.26
775382--775428	23	2.0	24	83	4	60	46	4	2	46	1.34
775848--775921	15	5.0	14	68	22	53	32	1	1	64	1.10
775804--775920	51	2.3	49	76	5	119	35	0	1	61	1.12
775934--775968	3	11.7	3	100	0	70	65	0	0	34	0.93
776173--776260	43	2.0	43	85	8	117	45	0	1	53	1.07
776297--776341	14	3.1	14	78	6	54	51	0	0	48	1.00
776299--776337	20	2.0	19	85	5	51	51	0	0	48	1.00
776300--776413	29	3.9	28	72	21	83	55	0	0	43	1.05

Tables:   1   2   3   4   5   6   7