genome.fa.s317.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold317
Parameters: 2 7 7 80 10 50 1000
Length:  576627

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271008--271052	21	2.1	21	84	8	56	22	20	4	53	1.63
273271--273296	13	2.0	13	100	0	52	30	15	15	38	1.88
273251--273314	32	2.0	33	90	3	103	28	14	18	39	1.90
273251--273321	19	4.0	18	72	25	62	26	12	21	39	1.89
276567--276592	13	2.0	13	100	0	52	30	15	15	38	1.88
276547--276610	33	2.0	33	90	3	103	26	14	17	42	1.87
276640--276693	20	2.7	20	100	0	108	35	20	14	29	1.93
276985--277198	79	2.7	79	89	2	317	28	24	12	34	1.92
277134--277251	51	2.3	51	81	4	141	30	27	10	31	1.90
277236--277308	28	2.6	28	86	4	103	24	31	19	24	1.98
277107--277429	157	2.1	158	80	5	350	28	25	12	32	1.93
277292--277401	51	2.2	52	81	6	136	30	22	11	34	1.90
287321--287370	23	2.2	22	85	3	64	86	8	4	2	0.78
287331--287370	18	2.2	18	91	8	64	87	10	2	0	0.63
288439--288695	55	4.5	58	83	6	271	25	28	22	24	1.99
288327--288516	94	2.0	97	85	8	262	24	28	17	28	1.98
288464--288692	60	3.9	60	83	6	274	25	27	21	24	2.00
288501--288900	215	1.9	214	87	5	592	24	27	20	27	1.99
288709--288968	122	2.2	115	88	5	369	25	26	20	27	1.99
288735--288971	61	3.9	61	83	5	302	25	27	20	26	1.99
288952--289055	45	2.4	43	88	7	149	22	27	14	35	1.93
288952--289089	42	3.2	42	84	5	152	19	27	13	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
289831--289856	13	2.0	13	100	0	52	30	15	15	38	1.88
289897--289948	20	2.6	20	93	0	86	30	15	9	44	1.78
289932--289969	20	1.9	20	88	0	58	28	15	13	42	1.85
289932--290001	33	2.1	33	89	0	104	27	18	11	42	1.84
292428--292699	76	3.5	75	85	4	330	29	27	11	31	1.92
292661--292775	51	2.3	51	84	0	158	32	27	9	30	1.89
292758--292832	28	2.7	29	87	4	100	29	29	16	25	1.96
292637--292956	158	2.0	158	79	5	335	29	26	11	32	1.92
292819--292935	51	2.3	51	83	0	153	28	25	12	33	1.93
294543--294568	13	2.0	13	100	0	52	38	15	15	30	1.88
294525--294588	33	2.0	32	87	3	92	37	20	15	26	1.92
300667--300711	21	2.1	21	84	8	56	53	4	20	22	1.63
302515--302553	15	2.6	15	91	0	60	51	15	20	12	1.76
304605--304642	13	2.9	13	100	0	76	31	15	15	36	1.90
307187--307212	13	2.0	13	100	0	52	38	15	15	30	1.88
310422--310447	8	3.2	8	100	0	52	15	0	23	61	1.33
310652--310687	13	2.8	13	86	0	54	33	13	16	36	1.89
311072--311135	32	2.0	33	87	3	94	42	14	14	29	1.84
311574--311640	37	1.9	35	88	11	102	32	11	25	29	1.92
314855--314879	13	1.9	13	100	0	50	36	16	16	32	1.90
315693--315760	30	2.2	32	86	5	95	30	4	27	36	1.77
316866--316981	20	6.7	17	77	22	86	43	15	12	28	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316884--316941	13	4.0	13	76	23	62	39	15	13	31	1.86
316866--316961	32	3.0	32	93	1	156	41	15	13	29	1.85
316930--316981	20	2.6	20	100	0	104	46	15	11	26	1.80
317420--317486	37	1.9	35	85	11	93	32	10	25	31	1.89
319639--319690	20	2.6	20	100	0	104	30	11	19	38	1.87
319852--319890	13	3.0	13	100	0	78	38	15	15	30	1.88
327663--327735	37	1.9	37	86	8	103	39	6	23	30	1.81
328394--328419	13	2.0	13	100	0	52	38	15	15	30	1.88
328376--328440	32	2.0	33	88	11	98	40	16	15	27	1.89
329217--329249	17	2.1	16	88	11	50	51	0	3	45	1.16
329356--329400	22	2.0	22	91	8	74	35	0	28	35	1.58
329956--329980	13	1.9	13	100	0	50	32	16	16	36	1.90
330059--330084	13	2.0	13	100	0	52	38	15	15	30	1.88
330041--330104	33	2.0	32	90	3	101	39	20	14	26	1.90
331897--331943	20	2.3	21	88	3	69	40	12	17	29	1.86
331994--332049	20	2.7	21	83	5	69	48	8	10	32	1.69
337110--337206	45	2.1	45	98	1	185	26	17	13	42	1.86
339072--339118	21	2.3	21	76	23	55	42	4	19	34	1.70
339239--339277	13	3.0	13	88	0	60	35	12	17	33	1.88
339263--339341	20	3.7	20	78	15	77	44	15	15	25	1.85
341356--341386	15	2.1	15	93	0	53	12	22	16	48	1.80
343190--343234	21	2.1	21	84	8	56	22	20	4	53	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345451--345476	13	2.0	13	100	0	52	30	15	15	38	1.88
347743--348394	79	8.3	77	81	7	684	27	25	13	32	1.94
347743--348386	236	2.7	234	81	5	735	28	25	13	32	1.94
350343--350650	77	4.0	77	78	5	266	34	18	14	32	1.92
350686--351022	58	5.8	58	74	8	220	46	13	10	29	1.76
350756--351002	117	2.1	116	82	4	311	46	13	10	29	1.76
350822--351039	117	1.9	117	82	0	274	47	13	10	28	1.76
351048--351080	10	3.3	10	87	12	50	63	12	6	18	1.48
355127--355202	20	3.7	20	73	13	64	40	9	15	34	1.79
355229--355254	13	2.0	13	100	0	52	30	15	15	38	1.88
355731--355778	15	3.1	15	82	8	53	6	16	2	75	1.11
358411--358663	58	4.4	58	75	7	174	30	10	15	43	1.80
358716--358863	80	1.9	79	85	4	208	32	14	19	33	1.92
362167--362238	24	3.0	24	100	0	144	37	8	20	33	1.83
370000--370055	21	2.7	21	81	10	69	42	26	0	30	1.56
377959--377989	13	2.4	13	94	0	53	35	16	12	35	1.87
377943--378011	33	2.1	33	86	5	95	33	13	17	36	1.88
378819--379053	118	2.0	118	86	0	326	33	15	14	37	1.87
379996--380038	16	2.7	16	77	0	50	30	2	0	67	1.03
381834--381875	19	2.3	18	84	8	57	61	0	0	38	0.96
382359--382397	20	2.0	19	90	5	60	35	0	0	64	0.94
382469--382504	8	4.4	8	89	6	54	22	0	0	77	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382453--382502	19	2.6	20	84	9	68	28	0	0	72	0.86
382444--382504	28	2.2	27	85	2	86	27	0	1	70	0.97
382453--382504	17	3.0	17	83	8	61	26	0	0	73	0.84
382805--382839	17	2.1	17	94	0	61	60	8	2	28	1.41
384446--384567	52	2.4	51	85	12	160	55	4	0	39	1.25
384582--384748	52	3.3	51	81	9	200	56	5	2	35	1.35
385187--385221	16	2.2	16	94	0	61	40	31	5	22	1.78
386507--386540	17	2.0	17	94	0	59	50	5	0	44	1.26
386922--386959	17	2.3	17	86	4	51	26	18	2	52	1.58
388394--388448	20	2.7	21	83	13	71	47	27	9	16	1.76
388621--388726	22	4.8	22	80	0	95	44	7	8	39	1.63
391371--391586	80	2.7	79	74	9	197	36	7	23	32	1.83
394708--394807	52	1.9	52	89	4	157	33	14	18	35	1.90
394774--394827	20	2.7	20	100	0	108	38	11	11	38	1.76
394866--394890	13	1.9	13	100	0	50	36	16	16	32	1.90
394929--394986	20	3.0	20	84	2	73	46	12	10	31	1.74
395860--396604	49	15.7	49	81	9	888	30	17	25	25	1.97
395851--396609	92	8.1	92	91	3	1063	31	17	26	25	1.97
396604--396673	33	2.1	35	94	5	126	20	17	37	25	1.94
396678--397412	34	22.6	32	75	16	490	33	12	32	20	1.91
396787--396840	27	2.0	27	85	0	72	25	12	38	22	1.90
396747--397389	61	10.0	61	80	10	564	32	12	33	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396711--397391	95	7.1	94	77	14	599	33	12	33	20	1.91
397180--397355	28	6.0	26	69	24	109	29	14	33	22	1.93
397071--397389	62	5.0	61	86	6	379	32	12	32	21	1.91
397333--397450	30	3.8	31	84	4	121	31	16	28	22	1.96
398734--398771	16	2.4	16	86	4	51	0	0	21	78	0.74
398747--398811	16	3.9	17	80	15	73	4	4	15	75	1.13
405720--405819	52	1.9	52	89	4	157	33	14	18	35	1.90
405786--405839	20	2.7	20	100	0	108	38	11	11	38	1.76
405878--405902	13	1.9	13	100	0	50	36	16	16	32	1.90
405941--405998	20	3.0	20	84	2	73	46	12	10	31	1.74

Tables:   1   2   3   4   5   6   7