genome.fa.s317.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold317
Parameters: 2 7 7 80 10 50 1000
Length:  576627

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479113--479570	92	5.0	92	84	6	517	25	24	17	32	1.97
479067--479569	135	3.7	137	84	7	548	26	24	17	32	1.97
479199--479609	141	2.9	143	85	5	482	25	24	17	33	1.96
479600--479888	55	5.1	55	70	15	171	25	24	14	35	1.93
479542--479968	227	1.9	228	83	3	565	23	24	15	36	1.94
480326--480580	31	7.8	31	77	11	174	19	33	15	31	1.93
480330--480580	131	1.9	131	90	0	403	19	33	15	30	1.93
480589--480758	33	5.2	33	86	3	236	28	34	17	18	1.94
480758--481213	49	9.7	49	79	10	456	25	24	17	32	1.97
480804--481169	43	8.1	43	80	9	372	25	24	18	32	1.97
480804--481169	92	4.0	88	82	8	389	25	24	18	32	1.97
481131--481487	52	6.4	55	71	14	166	24	24	15	36	1.93
481226--481352	67	1.9	68	85	4	177	23	24	12	39	1.89
481141--481567	227	1.9	228	84	5	578	23	24	15	36	1.94
481925--482184	31	7.9	33	76	13	209	18	32	14	33	1.92
481929--482166	131	1.8	131	89	1	379	19	33	14	32	1.92
482188--482357	33	5.2	33	86	3	236	28	35	17	18	1.94
482403--482854	92	5.0	90	85	7	514	25	25	18	31	1.97
482352--482898	227	2.4	227	93	1	914	25	24	17	32	1.97
482357--482853	135	3.6	136	87	4	616	25	24	18	31	1.97
482808--483145	52	6.1	55	70	15	153	23	23	14	37	1.92
482816--483172	55	6.4	54	71	15	169	24	24	14	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482911--483037	67	1.9	68	85	4	177	23	24	12	39	1.89
483610--483869	31	7.9	33	75	13	191	20	33	13	33	1.91
483614--483864	131	1.9	131	87	1	369	20	33	13	31	1.92
483873--484042	33	5.2	33	85	6	229	27	34	18	19	1.95
484042--485282	49	26.7	49	79	10	1278	25	25	18	31	1.98
484109--484176	21	3.2	21	61	19	50	25	29	17	27	1.97
484088--485291	92	13.0	92	84	7	1284	25	25	18	31	1.98
484336--484403	21	3.2	21	63	19	50	26	27	16	29	1.97
484710--484777	21	3.2	21	64	32	54	25	27	17	29	1.97
484802--484869	21	3.2	21	61	19	50	25	29	17	27	1.97
485192--485530	52	6.1	54	74	13	197	23	24	14	37	1.92
485103--485282	95	1.9	92	89	5	281	25	21	21	32	1.97
485995--486122	33	3.8	33	73	11	109	18	31	14	35	1.92
485999--486167	31	5.2	31	72	13	110	18	32	15	32	1.93
486161--486383	49	4.9	44	80	9	225	26	25	18	29	1.98
486246--486430	92	2.0	94	83	3	239	25	23	17	33	1.96
486417--486705	55	5.1	55	71	15	178	24	24	14	35	1.93
486359--486785	227	1.9	228	84	5	578	23	24	15	36	1.94
487143--487402	31	7.9	33	77	14	220	18	33	15	32	1.92
487147--487397	131	1.9	131	90	1	405	19	34	15	30	1.93
487143--487422	69	4.2	68	76	13	244	19	34	14	31	1.92
487406--487582	33	5.5	32	90	6	261	28	33	18	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487642--487709	21	3.2	21	61	19	50	25	29	17	27	1.97
487625--487979	43	8.0	43	82	7	431	25	25	18	30	1.98
487570--487980	135	3.0	135	96	0	723	25	25	18	31	1.97
487621--487980	92	4.0	86	82	8	450	25	25	18	31	1.97
487777--487844	21	3.2	21	61	19	50	25	29	17	27	1.97
487934--488271	52	6.1	55	71	15	169	23	23	14	37	1.92
487942--488298	55	6.4	54	71	14	194	24	24	14	36	1.93
488037--488163	67	1.9	68	85	4	177	23	24	12	39	1.89
487952--488378	227	1.9	228	85	5	596	23	24	15	36	1.94
488736--488995	31	7.9	33	77	14	220	18	33	15	32	1.92
488740--488990	131	1.9	131	90	1	405	19	34	15	30	1.93
488736--489015	69	4.2	68	76	13	244	19	34	14	31	1.92
488999--489168	33	5.2	33	83	6	220	28	35	17	19	1.94
489168--489715	49	11.8	48	78	10	525	25	24	18	31	1.98
489218--489667	43	9.9	43	79	9	441	25	25	19	30	1.98
489214--489667	92	5.0	92	85	5	518	25	25	18	30	1.98
489173--489707	141	3.8	140	86	5	526	25	24	18	31	1.98
489168--489667	184	2.7	183	82	7	677	25	25	18	30	1.98
489175--489724	92	5.9	93	81	8	402	25	24	18	31	1.97
489795--489989	53	3.7	52	78	4	158	24	25	15	34	1.94
489643--490069	227	1.9	228	85	5	605	23	24	15	36	1.94
490427--490705	31	8.4	34	77	11	208	20	34	13	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490431--490681	131	1.9	131	91	0	412	20	34	14	30	1.92
490696--490859	33	5.0	33	78	3	177	29	33	18	18	1.95
490696--490859	66	2.5	66	81	0	211	29	33	18	18	1.95
490859--491372	49	10.8	49	77	10	448	25	24	17	32	1.97
490926--491036	21	5.2	21	62	20	50	27	27	17	27	1.97
490905--491270	92	4.0	90	82	8	388	25	24	18	31	1.97
490854--491270	43	9.1	43	78	10	384	25	24	17	31	1.97
491224--491377	52	2.9	53	79	4	175	24	22	16	37	1.94
491232--491588	55	6.4	54	72	14	194	24	24	15	36	1.94
491327--491453	67	1.9	68	85	4	177	23	24	12	39	1.89
491242--491668	227	1.9	228	84	5	578	23	24	15	36	1.94
492026--492305	31	8.4	34	76	10	190	20	34	13	31	1.92
492030--492280	131	1.9	131	89	0	385	20	34	14	30	1.93
492289--492425	33	4.2	33	82	4	170	28	35	17	18	1.94
492293--492421	66	2.0	66	89	3	197	30	34	18	16	1.93
492425--492938	49	10.8	49	80	9	491	25	25	17	31	1.97
492471--492836	43	8.1	43	83	7	399	25	25	17	31	1.97
492471--492836	92	4.0	88	84	8	416	25	25	17	31	1.97
492790--493127	52	6.1	55	71	14	158	23	24	14	36	1.93
493600--493817	31	6.6	31	75	12	159	20	37	13	28	1.90
493596--493846	131	1.9	131	90	0	403	20	35	13	29	1.92
493631--493871	69	3.6	69	76	10	257	20	36	12	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
493855--494024	33	5.2	33	88	3	245	28	34	18	19	1.95
494024--494571	49	11.7	49	79	10	553	25	24	17	32	1.97
494070--494527	92	5.0	91	85	6	522	25	24	17	32	1.97
494024--494526	135	3.7	137	85	7	548	25	24	17	32	1.97
494389--494580	95	2.0	93	86	4	260	25	23	16	34	1.95
495282--495560	31	8.4	34	77	11	199	20	34	13	31	1.91
495282--495560	67	4.2	67	76	8	275	20	34	13	31	1.91
495544--495680	33	4.2	33	82	4	170	28	35	17	18	1.94
495548--495676	66	2.0	66	89	3	197	30	34	18	16	1.93
495680--496135	49	9.7	49	79	10	456	25	25	17	31	1.97
495726--496091	43	8.1	43	82	7	381	25	25	17	31	1.97
495726--496091	92	4.0	91	83	8	410	25	25	17	31	1.97
496045--496163	52	2.2	55	82	4	145	26	25	13	35	1.93
496267--496409	55	2.7	52	75	4	142	23	25	15	34	1.94
496855--497072	31	6.6	31	74	12	150	20	37	13	28	1.91
496851--497101	131	1.9	131	90	0	394	21	35	13	29	1.92
496886--497126	69	3.6	69	75	10	248	20	35	12	30	1.90
497110--497279	33	5.2	33	88	3	245	28	34	18	19	1.95
497279--497826	49	11.8	48	78	10	516	25	24	17	32	1.97
497279--497769	92	5.3	92	84	7	506	26	24	17	31	1.97
497279--497773	135	3.6	137	84	8	568	26	24	17	32	1.97
497644--497782	43	3.1	43	86	6	170	25	23	17	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497812--498100	55	5.1	55	72	15	198	24	24	13	36	1.92
497839--497965	67	1.9	68	86	1	184	23	25	12	38	1.90
498538--498774	31	7.2	34	78	12	194	18	35	13	32	1.90
498542--498779	131	1.8	131	92	0	404	18	35	13	31	1.91
498799--498937	33	4.2	33	88	0	208	27	35	17	18	1.94
498948--499392	49	9.5	49	81	10	488	25	24	18	31	1.97
498932--499347	43	9.1	44	80	10	444	25	25	18	31	1.98
498985--499347	92	4.0	88	82	11	423	25	24	18	31	1.98
499302--499666	52	6.6	54	73	14	208	24	24	14	36	1.93
499405--499531	67	1.9	68	85	4	177	23	24	12	39	1.89

Tables:   1   2   3   4   5   6   7