genome.fa.s317.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold317
Parameters: 2 7 7 80 10 50 1000
Length:  576627

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499320--499746	227	1.9	228	86	4	612	23	25	15	36	1.94
500112--500329	31	6.6	31	73	15	152	18	36	14	30	1.91
500132--500383	36	7.4	34	77	10	189	19	34	13	32	1.91
500108--500358	131	1.9	131	91	0	412	19	34	15	31	1.93
500367--500536	33	5.2	33	87	3	245	28	34	18	18	1.95
500536--501035	43	10.8	47	79	13	484	25	25	17	31	1.97
500531--500990	92	5.0	89	82	9	527	25	26	17	31	1.97
500853--501035	95	2.0	92	84	3	240	24	23	18	34	1.96
501048--501174	67	1.9	68	81	4	159	25	24	11	39	1.88
501115--501311	53	3.7	52	76	4	153	25	24	14	35	1.94
501747--502001	31	7.7	34	76	12	196	19	34	15	31	1.93
501751--501988	131	1.8	131	92	0	404	18	35	15	30	1.92
502008--502146	33	4.2	33	87	0	208	27	35	18	17	1.94
502146--502693	49	11.7	49	80	10	598	25	24	17	32	1.97
502252--502318	19	3.2	20	67	20	57	29	23	16	29	1.96
502146--502649	92	5.5	92	85	7	591	25	25	17	31	1.97
502157--502649	43	10.8	43	82	8	500	25	24	17	32	1.97
502603--502940	52	6.1	55	72	14	187	24	24	13	37	1.92
502706--502832	67	1.9	68	85	1	175	22	25	13	38	1.91
502621--503047	227	1.9	228	84	6	580	23	24	15	36	1.94
503405--503684	31	8.4	34	76	11	192	20	33	13	31	1.92
503405--503684	69	4.2	68	75	8	245	20	33	13	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503409--503659	131	1.9	131	90	0	403	20	34	14	30	1.93
503668--503836	33	5.2	33	84	4	218	28	33	18	18	1.95
503405--503717	69	4.7	69	72	12	172	21	33	14	30	1.93
503836--504383	49	11.7	49	80	10	607	25	24	18	32	1.97
503946--504013	21	3.2	21	67	19	59	29	25	14	30	1.95
503836--504335	92	5.4	92	85	6	592	25	25	18	31	1.97
504293--504665	52	6.7	55	73	12	221	24	23	15	36	1.93
504396--504521	67	1.9	67	86	3	182	23	24	12	38	1.90
504311--504736	226	1.9	227	85	5	603	23	24	15	36	1.94
505094--505339	36	7.5	33	75	13	181	20	33	14	31	1.92
505198--505279	31	2.7	30	80	1	92	21	37	17	23	1.93
505098--505335	130	1.8	130	90	0	386	20	34	14	30	1.93
505252--505372	36	3.4	34	77	7	118	23	34	9	32	1.88
505356--505525	33	5.2	33	85	3	227	28	34	18	18	1.95
505525--505937	49	8.7	49	78	11	441	25	25	17	31	1.97
505592--505659	21	3.2	21	63	19	50	26	29	16	27	1.97
505520--505801	92	3.1	92	94	1	467	24	26	17	31	1.97
505525--505937	141	2.9	141	85	6	507	25	25	17	31	1.97
505755--505935	92	1.9	92	84	3	236	25	23	17	33	1.96
505950--506076	67	1.9	68	86	1	184	23	25	12	38	1.90
506649--506927	36	8.4	34	76	12	192	20	34	13	31	1.91
506653--506902	130	1.9	130	90	0	392	20	34	14	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506649--506927	69	4.2	67	76	9	268	20	34	13	31	1.91
506911--507080	33	5.2	33	85	3	227	28	34	18	18	1.95
507080--507627	49	11.7	49	79	11	591	25	25	17	31	1.97
507133--507579	43	9.8	43	81	10	473	25	25	18	30	1.98
507185--507579	92	4.3	92	90	4	568	24	25	18	31	1.98
507080--507579	184	2.7	184	84	7	667	25	26	17	31	1.97
507185--507627	141	3.2	141	87	7	561	24	24	18	32	1.97
507537--507823	52	5.1	54	72	14	201	24	23	14	37	1.92
507640--507766	67	1.9	68	86	1	184	23	25	12	38	1.90
507555--507981	227	1.9	228	85	3	601	23	24	15	37	1.93
508325--508575	31	7.6	31	76	9	144	20	34	15	29	1.93
508325--508575	131	1.9	131	89	0	385	20	34	15	29	1.93
508584--508720	33	4.2	33	82	4	170	28	35	17	18	1.94
508588--508716	66	2.0	66	89	3	197	30	34	18	16	1.93
508720--509175	49	9.7	49	79	10	447	25	25	17	31	1.97
508766--509131	43	8.1	43	82	7	372	25	25	18	31	1.97
508766--509131	92	4.0	91	82	8	401	25	25	18	31	1.97
509085--509203	52	2.2	55	82	4	145	26	25	13	35	1.93
509307--509449	55	2.7	52	75	4	142	23	25	15	34	1.94
509710--509927	31	6.6	31	74	12	150	20	37	13	28	1.91
509706--509956	131	1.9	131	90	0	394	21	35	13	29	1.92
509741--509981	69	3.6	69	75	10	248	20	35	12	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
509965--510134	33	5.2	33	88	3	245	28	34	18	19	1.95
510134--510681	49	11.7	49	79	10	544	25	24	17	32	1.97
510134--510624	92	5.3	92	86	6	538	25	24	17	32	1.97
510134--510628	135	3.6	137	86	6	577	25	24	17	32	1.97
510548--510637	43	2.1	43	89	0	135	26	23	16	33	1.96
510499--510690	95	2.0	93	85	4	251	25	23	16	34	1.95
510694--510820	67	1.9	68	85	4	177	23	24	12	39	1.89
510609--511035	227	1.9	228	83	3	565	23	24	14	37	1.93
511393--511629	31	7.2	34	78	12	192	18	34	14	32	1.91
511397--511634	131	1.8	131	92	0	404	18	35	14	31	1.91
511654--511792	33	4.2	33	88	0	208	27	35	17	18	1.94
511803--512247	49	9.5	49	81	10	488	25	24	18	31	1.97
511787--512202	43	9.1	44	80	10	444	25	25	18	31	1.98
511840--512202	92	4.0	88	82	11	423	25	24	18	31	1.98
512157--512521	52	6.6	54	72	14	208	24	25	14	35	1.94
512260--512386	67	1.9	68	85	4	177	23	24	12	39	1.89
512175--512601	227	1.9	228	85	4	594	23	25	15	35	1.94
512967--513184	31	6.6	31	74	13	159	19	36	13	30	1.90
512987--513238	36	7.4	34	77	10	205	20	34	13	32	1.91
512963--513213	131	1.9	131	90	0	394	19	34	14	31	1.92
513222--513391	33	5.2	33	87	3	245	28	34	18	18	1.95
513391--513890	43	10.8	47	79	13	484	25	25	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513386--513845	92	5.0	89	82	9	527	25	26	17	31	1.97
513708--513890	95	2.0	92	84	3	240	24	23	18	34	1.96
513876--514164	55	5.1	55	69	16	180	26	24	13	36	1.92
513903--514029	67	1.9	68	81	4	159	25	24	11	39	1.88
513970--514166	53	3.7	52	76	4	144	25	24	14	34	1.94
514602--514856	31	7.7	34	76	12	196	19	34	15	31	1.93
514606--514843	131	1.8	131	92	0	404	18	35	15	30	1.92
514863--515001	33	4.2	33	87	0	208	27	35	18	17	1.94
515001--515548	49	11.7	49	80	10	589	25	24	17	32	1.97
514996--515503	43	11.1	44	81	10	531	25	25	17	31	1.97
515107--515173	19	3.2	20	67	20	57	29	23	16	29	1.96
515001--515504	92	5.5	92	85	7	582	25	25	17	31	1.97
515458--515795	52	6.1	55	73	14	178	24	24	13	36	1.92
515561--515687	67	1.9	68	86	1	184	22	25	13	37	1.91
515476--515902	227	1.9	228	84	6	580	23	25	15	36	1.94
516264--516514	31	7.6	31	74	11	155	19	33	15	31	1.93
516264--516514	131	1.9	131	88	0	376	19	33	15	31	1.93
516523--516692	33	5.2	33	85	3	227	28	34	18	18	1.95
516692--517239	49	11.7	49	80	10	598	25	24	17	32	1.97
516802--516869	21	3.2	21	67	19	59	29	25	14	30	1.95
516692--517191	92	5.4	92	85	6	583	25	25	18	31	1.97
517149--517521	52	6.7	54	73	12	222	24	23	15	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517252--517377	67	1.9	67	86	3	182	23	24	12	38	1.90
517167--517592	226	1.9	227	86	4	619	23	24	15	36	1.94
517950--518195	36	7.5	33	74	13	172	20	33	14	31	1.92
517954--518188	130	1.8	130	90	0	380	20	33	14	31	1.93
518108--518228	36	3.4	34	77	7	118	23	34	9	32	1.88
518212--518381	33	5.2	33	85	3	227	28	34	18	18	1.95
518381--518793	49	8.7	49	78	11	450	24	25	17	31	1.97
518448--518515	21	3.2	21	63	19	50	26	29	16	27	1.97
518376--518657	92	3.1	92	94	1	467	24	26	17	31	1.97
518381--518793	141	2.9	141	86	6	516	24	25	17	31	1.97

Tables:   1   2   3   4   5   6   7