genome.fa.s317.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold317
Parameters: 2 7 7 80 10 50 1000
Length:  576627

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406862--407715	92	9.1	92	90	4	1208	30	17	26	24	1.97
406862--407715	187	4.5	184	90	4	1226	30	17	26	24	1.97
407710--407779	33	2.1	35	94	5	126	20	17	37	25	1.94
407784--408518	34	22.6	32	76	16	526	33	12	33	20	1.91
407893--407946	27	2.0	27	85	0	72	25	12	38	22	1.90
407853--408495	61	10.0	61	81	10	582	32	12	33	20	1.91
407817--408497	95	7.1	94	77	14	608	32	12	33	20	1.91
408286--408461	28	6.0	26	69	24	109	29	14	33	22	1.93
408177--408495	62	5.0	61	86	6	388	32	12	33	21	1.91
408439--408556	30	3.8	31	84	4	121	31	16	28	22	1.96
409463--409525	32	1.9	33	81	9	76	34	17	17	30	1.93
411953--411997	20	2.2	21	88	4	65	31	13	22	33	1.92
411868--412036	93	1.8	93	85	0	239	39	12	20	27	1.88
411868--412066	93	2.1	93	82	0	236	38	12	20	28	1.88
413888--414085	93	2.1	92	81	4	229	39	12	18	29	1.87
415986--416033	20	2.3	21	89	3	71	33	12	20	33	1.90
415906--416101	92	2.1	92	81	1	232	40	12	16	30	1.85
416166--416235	20	3.5	20	75	9	70	31	15	11	41	1.83
416890--416916	12	2.2	12	100	0	54	25	7	18	48	1.74
419459--419506	25	1.9	25	95	0	87	52	18	8	20	1.71
422455--422528	20	3.7	20	75	12	80	31	12	14	41	1.83
422435--422528	40	2.4	39	82	8	111	32	11	14	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425816--425994	51	3.6	51	69	17	162	38	13	16	31	1.87
425885--425912	13	2.2	13	100	0	56	39	17	14	28	1.89
425824--426014	95	2.0	95	97	0	364	39	13	15	31	1.86
425962--426027	33	2.0	33	82	5	80	42	12	15	30	1.83
426734--426835	52	2.0	52	86	3	143	38	15	21	24	1.92
426855--426988	43	3.0	43	75	8	126	32	15	26	26	1.96
427006--427301	28	10.6	27	80	8	292	18	17	31	32	1.94
427006--427294	55	5.2	54	86	5	298	18	17	30	33	1.94
426989--427294	111	2.7	111	84	6	377	19	18	30	32	1.95
443915--443946	16	2.0	16	100	0	64	37	12	25	25	1.91
456912--456977	9	7.0	9	80	14	71	83	10	1	4	0.86
456910--456976	12	5.5	13	75	16	54	85	8	1	4	0.80
456910--456976	13	5.3	12	77	13	64	85	8	1	4	0.80
458324--458402	28	2.9	28	82	1	97	29	26	18	25	1.98
458574--458931	32	11.2	32	82	4	364	28	28	17	24	1.98
458579--458974	96	4.1	96	81	4	370	29	29	17	24	1.97
464228--464471	88	2.8	87	86	3	319	32	24	7	35	1.83
465381--465431	20	2.5	20	83	0	66	41	15	9	33	1.80
466668--466724	19	2.9	19	81	2	69	43	8	8	38	1.67
467929--468146	31	6.6	31	74	16	145	18	35	15	30	1.92
467949--468200	36	7.4	34	78	11	191	20	34	13	32	1.91
467960--468200	69	3.6	67	76	10	235	20	34	13	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467932--468175	131	1.9	131	90	1	391	19	34	15	31	1.92
468184--468345	33	4.9	33	88	3	238	29	33	19	17	1.95
468353--468900	49	11.8	48	79	11	570	26	24	17	32	1.96
468353--468856	92	5.5	92	83	8	548	26	24	17	32	1.97
468348--468856	43	11.1	43	78	10	478	25	24	16	32	1.96
468399--468855	141	3.3	134	87	6	564	25	24	17	31	1.97
468810--469147	52	6.1	55	73	15	187	24	23	13	37	1.92
468834--469174	55	6.1	54	73	13	212	24	24	14	36	1.93
468913--469039	67	1.9	68	85	1	175	24	25	11	38	1.89
468980--469174	53	3.7	52	80	4	167	24	24	15	35	1.94
468831--469254	227	1.9	228	86	4	606	23	25	15	36	1.94
469640--469891	36	7.4	34	76	10	180	21	34	12	31	1.90
469620--469798	31	5.5	31	78	7	135	20	37	14	27	1.91
469624--469866	131	1.9	131	90	0	387	20	34	13	30	1.92
469651--469891	69	3.6	69	75	10	239	21	34	12	31	1.90
469879--470037	33	4.8	33	88	4	214	30	33	19	16	1.94
469880--470037	66	2.4	66	89	2	237	30	33	19	16	1.94
470055--470590	43	11.8	43	75	11	410	24	24	18	32	1.97
470057--470590	92	5.9	92	83	8	605	24	24	18	32	1.97
470055--470583	141	3.9	141	76	11	408	24	24	18	32	1.97
470544--470696	54	2.9	53	80	1	164	24	21	16	37	1.93
470646--470772	67	1.9	68	85	1	175	22	25	13	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470713--470907	53	3.7	52	78	4	158	24	25	15	34	1.94
470765--470907	55	2.7	52	76	4	151	24	25	15	34	1.94
471345--471604	31	7.9	33	72	17	152	19	33	13	33	1.91
471349--471599	131	1.9	131	86	4	355	19	34	14	31	1.92
471608--471777	33	5.2	33	83	6	220	27	33	18	20	1.96
471777--472974	49	25.7	49	80	10	1279	25	25	18	31	1.98
471844--471911	21	3.2	21	61	19	50	25	29	17	27	1.97
471823--472926	92	12.0	92	85	7	1208	25	25	18	31	1.98
471777--472974	184	6.4	180	83	8	1374	25	25	18	31	1.98
472803--473032	49	4.5	52	83	7	267	24	23	18	33	1.96
472829--473329	228	2.2	224	84	5	627	23	24	15	36	1.94
473691--473873	31	5.7	31	71	11	125	19	34	15	29	1.93
473750--473941	31	5.8	33	74	14	110	19	33	15	31	1.93
473715--473966	36	7.4	35	75	15	151	19	34	13	32	1.91
473687--473966	67	4.2	66	74	11	225	19	33	14	32	1.92
473691--473941	131	1.9	131	87	3	371	19	33	15	31	1.93
473950--474119	33	5.2	33	85	3	227	28	35	17	19	1.94
474119--474676	49	11.9	48	76	11	500	25	24	17	31	1.97
474186--474253	21	3.2	21	61	19	50	26	29	16	27	1.97
474165--474578	92	4.5	92	87	3	516	25	25	18	30	1.98
474119--474578	135	3.3	137	85	8	558	25	25	18	30	1.98
474746--474940	53	3.7	52	76	6	151	24	24	15	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474594--475020	227	1.9	228	84	4	585	23	24	15	36	1.94
475378--475637	31	7.9	33	77	14	220	18	33	15	32	1.92
475382--475632	131	1.9	131	90	1	405	19	34	15	30	1.93
475378--475657	69	4.2	68	76	13	244	19	34	14	31	1.92
475641--475810	33	5.2	33	86	6	238	28	34	18	19	1.95
475810--476357	49	11.8	48	78	10	525	25	25	18	31	1.98
475877--475944	21	3.2	21	61	19	50	25	29	17	27	1.97
475860--476309	43	9.9	43	79	9	441	25	25	19	29	1.98
475856--476309	92	5.0	92	84	5	527	25	25	18	30	1.98
475815--476349	135	3.8	140	86	5	517	25	25	18	31	1.98
475810--476309	184	2.7	183	82	7	677	25	25	18	30	1.98
475817--476366	92	5.9	93	82	7	411	25	24	18	31	1.97
476275--476631	52	6.4	54	73	15	212	24	23	15	36	1.93
476437--476631	53	3.7	52	78	4	158	24	25	15	34	1.94
476285--476711	227	1.9	228	85	5	605	23	24	15	36	1.94
477073--477323	131	1.9	131	90	0	394	20	33	15	30	1.93
477069--477348	31	8.4	33	75	12	184	20	33	13	32	1.92
477330--477468	33	4.2	33	82	3	172	28	34	17	19	1.94
477336--477464	66	2.0	66	89	3	197	30	34	18	16	1.93
477468--477978	49	10.7	49	79	9	476	25	25	17	32	1.97
477514--477879	43	8.1	43	82	7	390	25	25	17	31	1.97
477514--477879	92	4.0	87	84	8	403	25	25	17	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477833--478170	52	6.1	55	73	13	183	24	25	13	36	1.92
477851--478269	227	1.8	228	84	4	578	23	25	15	36	1.93
478055--478197	55	2.7	52	75	4	142	23	25	15	34	1.94
478643--478860	31	6.6	31	75	12	150	20	37	12	28	1.90
478639--478889	131	1.9	131	90	0	394	21	35	13	29	1.92
478674--478914	69	3.6	69	76	10	257	20	36	12	30	1.90
478905--479067	33	4.9	33	86	5	213	29	34	19	17	1.94
478903--479067	66	2.5	66	88	2	242	29	34	18	17	1.94
479067--479614	49	11.7	49	78	10	544	25	24	17	32	1.97
479117--479569	43	10.0	43	79	9	420	26	24	17	31	1.97

Tables:   1   2   3   4   5   6   7