genome.fa.s317.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold317
Parameters: 2 7 7 80 10 50 1000
Length:  576627

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518703--518821	52	2.2	55	80	4	136	25	25	14	35	1.93
518806--518932	67	1.9	68	88	1	193	23	25	12	37	1.90
518723--519147	227	1.9	228	84	4	572	23	25	15	35	1.94
519505--519783	36	8.4	34	76	12	192	20	34	13	31	1.91
519509--519758	130	1.9	130	90	0	392	20	34	14	30	1.93
519505--519783	69	4.2	67	76	9	268	20	34	13	31	1.91
519767--519936	33	5.2	33	85	3	227	28	34	18	18	1.95
519936--520483	49	11.7	49	80	11	591	25	25	17	31	1.97
519989--520435	43	9.8	43	81	10	473	24	25	18	31	1.98
519982--520435	92	5.0	92	87	5	563	24	25	18	31	1.97
519936--520483	141	3.9	141	88	5	560	25	25	17	31	1.97
520393--520730	52	6.1	54	74	13	195	24	23	14	37	1.92
520469--520757	55	5.1	55	72	15	207	24	25	13	35	1.93
520496--520622	67	1.9	68	86	1	184	23	25	12	38	1.90
520411--520837	227	1.9	228	85	4	594	23	24	15	36	1.93
521177--521430	33	7.7	33	72	11	164	20	33	14	31	1.92
521196--521430	130	1.8	130	89	0	371	20	34	14	31	1.92
521439--521608	33	5.2	33	85	3	227	28	34	18	18	1.95
521608--522020	49	8.7	49	79	11	459	24	25	18	31	1.97
521675--521742	21	3.2	21	63	19	50	26	29	16	27	1.97
521603--521884	92	3.1	92	94	1	467	24	26	17	31	1.97
521608--522020	141	2.9	141	86	6	525	24	25	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
521930--522264	52	6.0	55	74	13	186	23	25	14	36	1.93
522033--522159	67	1.9	68	86	1	184	23	25	12	38	1.90
521948--522374	227	1.9	228	84	4	585	23	25	15	36	1.94
522732--522977	36	7.5	33	76	13	199	20	34	13	31	1.91
522736--522917	31	5.7	31	77	8	143	20	36	15	27	1.93
522736--522973	130	1.8	130	90	0	386	20	34	13	30	1.92
522732--523010	67	4.2	68	75	12	231	20	34	13	31	1.91
522994--523163	33	5.2	33	85	3	227	28	34	18	18	1.95
523163--523710	49	11.7	49	80	10	607	25	25	17	31	1.97
523216--523662	43	9.8	43	82	9	489	25	25	18	30	1.98
523209--523662	92	5.0	92	88	5	581	25	25	18	31	1.97
523163--523662	184	2.7	184	85	7	685	25	25	18	31	1.97
523620--523993	52	6.7	54	73	12	224	24	24	15	36	1.94
523723--523849	67	1.9	68	86	1	184	23	25	12	38	1.90
523790--523984	53	3.7	52	78	4	158	24	25	15	34	1.94
523638--524064	227	1.9	228	86	4	612	23	24	15	36	1.94
523842--523984	55	2.7	52	76	4	151	24	25	15	34	1.94
524404--524658	31	7.8	31	78	11	201	20	34	14	31	1.92
524434--524683	36	7.4	34	79	9	212	20	34	12	31	1.91
524404--524683	69	4.2	68	76	11	267	20	35	13	31	1.91
524667--524828	33	4.9	33	81	6	195	30	31	19	18	1.96
524836--525383	49	11.7	49	78	12	566	25	25	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524903--524970	21	3.2	21	61	19	50	25	29	17	27	1.97
524886--525338	43	10.0	43	79	11	442	25	25	18	30	1.98
524886--525247	92	4.0	92	89	3	515	25	25	17	30	1.98
525038--525105	21	3.2	21	63	19	50	26	29	16	27	1.97
524824--525338	135	3.8	136	85	8	504	25	26	18	30	1.98
524842--525383	92	5.8	91	82	10	479	25	25	18	31	1.97
525293--525657	52	6.6	55	73	13	223	24	24	15	36	1.93
525396--525522	67	1.9	68	86	1	184	23	25	12	38	1.90
525311--525737	227	1.9	228	85	5	596	22	25	15	36	1.94
526077--526295	31	6.7	34	78	12	187	19	32	15	31	1.93
526304--526389	33	2.6	33	98	1	165	31	34	15	18	1.92
526597--526653	13	3.9	13	74	24	51	36	14	15	33	1.88
526577--526674	32	3.0	32	93	1	160	35	11	16	36	1.84
526716--526740	13	1.9	13	100	0	50	32	16	16	36	1.90
526728--526779	19	2.7	20	88	8	72	28	15	15	40	1.88
526642--526868	107	2.1	107	93	1	384	35	16	13	34	1.88
526856--526981	52	2.4	52	96	2	227	35	17	18	28	1.93
536936--536992	13	3.9	13	76	24	60	36	15	14	33	1.88
536936--537014	32	2.4	34	91	4	126	34	15	13	36	1.87
537793--537958	49	3.4	48	75	10	163	30	15	28	26	1.96
537737--537975	100	2.4	99	81	4	257	30	15	27	25	1.96
537787--537975	100	1.9	101	86	1	272	31	16	26	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
537931--538015	43	2.0	43	85	0	116	29	18	25	25	1.98
538105--538366	57	4.6	57	81	9	313	22	17	28	30	1.97
538037--538365	29	11.6	28	80	7	310	21	17	28	32	1.96
538724--538845	37	3.3	37	98	0	235	42	14	15	27	1.86
539891--539938	22	2.2	22	88	0	69	8	2	2	87	0.70
539897--539949	22	2.4	22	84	6	63	5	5	3	84	0.85
539890--539950	31	2.0	30	81	12	70	6	4	3	85	0.83
546190--546214	13	1.9	13	100	0	50	36	16	16	32	1.90
546255--546321	33	2.0	33	88	0	98	40	13	11	34	1.81
546277--546301	13	1.9	13	100	0	50	32	16	16	36	1.90
547048--547224	52	3.4	52	97	0	327	28	17	18	36	1.93
547048--547244	104	1.9	104	90	2	315	29	17	18	35	1.94
547233--547257	13	1.9	13	100	0	50	36	16	16	32	1.90
547298--547364	33	2.0	33	88	0	98	40	13	11	34	1.81
547320--547344	13	1.9	13	100	0	50	32	16	16	36	1.90
567071--567139	19	3.4	19	75	14	75	31	5	15	46	1.70
567828--567910	39	2.1	39	93	0	139	32	13	18	36	1.89
572326--572378	26	2.0	26	96	0	97	22	13	24	39	1.90
572830--572869	21	1.9	21	90	10	64	40	0	0	60	0.97
572857--572893	17	2.1	18	85	14	51	56	0	2	40	1.13

Tables:   1   2   3   4   5   6   7

The End!