genome.fa.s322.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold322
Parameters: 2 7 7 80 10 50 1000
Length:  1390506

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 1030 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282950--282974	13	1.9	13	100	0	50	32	16	16	36	1.90
283045--283108	33	2.0	32	87	3	92	39	18	14	28	1.90
289177--289201	13	1.9	13	100	0	50	32	16	16	36	1.90
289646--289688	20	2.0	22	86	8	63	18	46	30	4	1.69
291584--291608	13	1.9	13	100	0	50	32	16	16	36	1.90
291596--291648	20	2.6	21	82	8	65	37	16	16	28	1.91
291708--291733	13	2.0	13	100	0	52	38	15	15	30	1.88
291690--291753	33	2.0	32	90	3	101	39	20	14	26	1.90
298872--298927	19	2.9	19	75	2	58	33	19	10	35	1.87
298972--299002	13	2.4	13	94	0	53	32	12	12	41	1.81
300601--300638	12	3.2	12	88	0	58	34	0	34	31	1.58
302100--302140	20	2.0	21	95	4	75	34	17	14	34	1.90
303816--303850	15	2.3	15	90	0	52	40	2	28	28	1.71
306951--306981	16	2.0	16	93	6	55	58	0	3	38	1.15
308316--308355	20	2.0	21	95	5	73	40	12	17	30	1.86
310912--310967	20	2.8	20	89	2	78	32	16	14	37	1.88
310998--311060	33	1.9	32	87	12	92	34	12	19	33	1.89
314020--314221	52	3.9	50	80	8	208	36	8	23	31	1.85
314020--314238	51	4.2	51	80	8	201	34	9	25	31	1.87
314252--314388	52	2.6	50	84	10	168	29	10	27	31	1.91
316735--316760	13	2.0	13	100	0	52	38	15	15	30	1.88
316814--316875	19	3.6	19	75	24	82	37	19	11	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316799--316874	32	2.4	32	95	0	134	35	18	13	32	1.89
319421--319445	13	1.9	13	100	0	50	32	16	16	36	1.90
319354--319510	68	2.3	68	90	1	235	38	14	14	33	1.86
320822--320914	20	4.6	20	77	10	91	38	15	16	30	1.89
320860--320935	21	3.7	21	82	3	109	40	11	18	28	1.86
320842--320935	41	2.3	41	98	0	179	39	12	18	29	1.88
320842--320915	20	3.7	20	80	3	94	36	13	18	31	1.90
320974--320999	13	2.0	13	100	0	52	38	15	15	30	1.88
323218--323262	21	2.1	21	84	8	56	53	4	20	22	1.63
327030--327107	20	3.6	21	74	15	70	26	14	15	43	1.85
327096--327133	13	2.9	13	96	0	67	34	18	15	31	1.92
329564--329656	20	4.6	20	77	10	91	38	15	16	30	1.89
329602--329677	21	3.7	21	82	3	109	40	11	18	28	1.86
329584--329677	41	2.3	41	98	0	179	39	12	18	29	1.88
329584--329657	20	3.7	20	80	3	94	36	13	18	31	1.90
329716--329741	13	2.0	13	100	0	52	38	15	15	30	1.88
332024--332076	19	2.7	19	79	2	61	33	22	11	32	1.90
332130--332181	20	2.6	20	100	0	104	42	11	19	26	1.85
334275--334300	13	2.0	13	100	0	52	30	15	15	38	1.88
334999--335042	21	2.1	21	83	8	54	25	31	4	38	1.76
336848--336886	13	3.0	13	100	0	78	38	15	15	30	1.88
338056--338086	15	2.1	15	93	0	53	12	22	16	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339889--339933	21	2.1	21	84	8	56	22	20	4	53	1.63
350128--350169	20	2.1	20	95	0	75	14	30	9	45	1.77
356906--356931	5	5.2	5	100	0	52	80	0	19	0	0.71
359785--359905	2	60.0	2	71	14	70	42	5	5	46	1.52
361497--361569	20	3.7	19	87	7	94	27	16	19	36	1.93
361614--361671	13	4.4	13	84	4	80	32	15	17	34	1.91
361612--361665	27	2.0	27	100	0	108	29	14	22	33	1.94
368423--368537	2	57.0	2	69	14	58	41	6	6	46	1.53
370129--370201	20	3.7	19	87	7	94	27	16	19	36	1.93
370246--370303	13	4.4	13	84	4	80	32	15	17	34	1.91
370244--370297	27	2.0	27	100	0	108	29	14	22	33	1.94
377055--377173	2	59.0	2	70	14	66	42	5	5	46	1.52
378765--378837	20	3.7	19	87	7	94	27	16	19	36	1.93
378882--378939	13	4.4	13	84	4	80	32	15	17	34	1.91
378880--378933	27	2.0	27	100	0	108	29	14	22	33	1.94
387547--387604	19	3.0	19	85	9	82	32	15	15	36	1.89
387649--387679	13	2.4	13	94	0	53	35	16	12	35	1.87
388944--388985	21	2.0	21	86	13	61	40	0	0	59	0.97
391026--391082	28	2.0	28	96	0	105	36	22	10	29	1.88
396361--396428	20	3.4	20	82	13	79	41	0	1	57	1.08
398294--398320	13	2.1	13	100	0	54	29	14	14	40	1.86
398391--398443	20	2.7	19	88	11	72	37	13	18	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399497--399589	19	5.5	19	72	27	102	34	12	18	34	1.89
399514--399603	13	6.0	13	71	26	63	34	14	17	33	1.90
399497--399602	32	3.3	32	98	0	203	33	14	17	33	1.90
402040--402224	76	2.4	76	90	1	282	27	24	15	33	1.95
402255--402318	28	2.3	27	81	7	74	23	32	15	28	1.95
402303--402422	51	2.4	51	90	2	188	30	30	11	26	1.92
402406--402478	28	2.6	28	91	0	110	21	32	20	24	1.97
402255--402580	158	2.1	158	83	1	402	26	28	13	30	1.94
402461--402631	51	3.4	51	85	1	200	27	23	14	33	1.94
405887--405912	13	2.0	13	100	0	52	30	15	15	38	1.88
405867--405930	32	2.0	33	90	3	103	28	14	18	39	1.90
405867--405937	19	4.0	18	72	25	62	26	12	21	39	1.89
406609--406654	21	2.2	21	84	7	58	26	30	4	39	1.75
407789--407813	13	1.9	13	100	0	50	32	16	16	36	1.90
409248--409412	84	2.0	84	82	7	201	24	19	3	52	1.62
411465--411490	13	2.0	13	100	0	52	30	15	15	38	1.88
411445--411508	32	2.0	33	90	3	103	28	12	20	39	1.89
411445--411512	19	3.9	18	75	25	65	27	11	20	39	1.88
414561--414590	5	6.0	5	100	0	60	60	0	0	40	0.97
414560--414625	5	11.3	6	80	15	52	62	0	0	37	0.96
414757--415094	166	2.0	165	82	5	416	52	8	9	29	1.64
415071--415109	20	1.9	21	84	5	53	64	0	2	33	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418871--418896	3	8.7	3	100	0	52	34	0	0	65	0.93
430889--430922	13	2.7	13	90	4	52	0	17	0	82	0.67
431598--432055	168	2.7	167	88	3	645	45	10	13	30	1.76
431598--432121	168	3.2	164	85	5	523	45	9	13	31	1.75
433158--433593	228	1.9	228	84	2	588	27	15	14	41	1.87
435361--435388	6	4.7	6	100	0	56	64	0	0	35	0.94
435437--435520	32	2.6	31	75	12	80	57	2	2	38	1.25
435561--435620	15	3.7	15	75	20	50	61	0	0	38	0.96
435562--435627	32	2.0	34	88	11	102	62	0	0	37	0.96
435628--435667	5	8.0	5	91	8	64	60	0	0	40	0.97
436083--436119	5	7.6	5	87	6	58	56	0	0	43	0.99
436781--436892	32	3.3	32	77	17	95	57	0	0	41	1.11
437307--437388	42	2.0	42	92	0	137	35	12	30	21	1.90
439291--439315	12	2.1	12	100	0	50	84	0	8	8	0.79
442084--442148	33	2.0	33	84	6	87	33	15	15	35	1.89
442179--442232	19	2.8	20	82	5	74	35	16	14	33	1.90
443926--443985	26	2.3	26	97	0	111	35	13	10	41	1.78
445090--445413	109	2.9	110	81	6	343	41	8	11	38	1.72
446063--446422	36	10.1	36	72	9	254	35	11	19	33	1.88
446063--446161	33	2.9	33	76	10	92	33	9	21	36	1.85
446179--446412	107	2.2	108	79	3	249	34	12	19	33	1.90
446372--446467	50	1.9	50	80	4	113	39	8	13	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447657--447707	20	2.5	21	80	3	59	37	11	15	35	1.84
447732--447915	74	2.5	74	91	1	291	29	18	13	38	1.89
455926--455978	19	2.7	20	85	8	72	39	18	13	28	1.88
462139--462177	13	3.0	13	96	0	69	30	17	15	35	1.91
464739--464764	13	2.0	13	100	0	52	38	15	15	30	1.88
464721--464785	32	2.0	32	87	6	94	40	18	13	27	1.89
471907--471948	12	3.6	11	84	12	57	88	4	0	7	0.64
473497--473866	130	2.9	130	85	4	480	25	29	14	31	1.95
473773--473843	33	2.2	33	84	5	90	26	30	18	23	1.97
474082--474277	52	3.8	52	85	1	232	26	26	16	31	1.96

Tables:   1   2   3   4   5   6   7   8   9