genome.fa.s322.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold322
Parameters: 2 7 7 80 10 50 1000
Length:  1390506

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1030 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1301196--1301286	43	2.1	44	91	2	148	26	25	18	29	1.98
1301097--1301406	166	1.9	165	86	6	448	24	25	13	36	1.93
1301290--1301416	67	1.9	68	81	4	159	23	23	12	40	1.89
1302219--1302243	13	1.9	13	100	0	50	36	16	16	32	1.90
1302203--1302267	32	2.0	33	93	3	114	35	12	16	35	1.87
1302305--1302329	13	1.9	13	100	0	50	32	16	16	36	1.90
1302318--1302463	52	2.8	52	91	4	233	34	19	17	28	1.95
1305859--1305944	29	2.9	30	87	6	122	30	29	5	34	1.81
1305993--1306034	20	2.1	20	95	0	75	54	14	11	19	1.70
1308215--1308269	21	2.6	21	85	0	65	18	21	0	60	1.37
1308230--1308273	21	2.1	21	91	0	70	20	18	0	61	1.35
1310369--1310457	24	3.9	24	76	11	78	44	7	22	24	1.79
1310379--1310438	10	5.6	10	81	14	66	40	6	28	25	1.80
1313618--1313716	20	4.8	21	70	21	66	35	13	18	33	1.89
1313702--1313727	13	2.0	13	100	0	52	38	15	15	30	1.88
1316314--1316350	13	2.8	13	91	0	56	35	16	16	32	1.91
1322498--1322523	13	2.0	13	100	0	52	38	15	15	30	1.88
1322476--1322543	33	2.1	32	91	8	111	32	16	16	35	1.91
1324529--1324809	151	1.8	153	82	3	361	39	20	16	24	1.92
1325614--1325926	157	2.0	156	79	12	341	53	8	7	30	1.58
1327365--1327446	38	2.1	39	95	2	148	42	4	8	43	1.56
1329286--1329337	22	2.5	20	81	12	61	42	17	3	36	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1335779--1335827	3	16.3	3	91	0	80	30	32	0	36	1.58
1337403--1337467	33	2.0	32	85	11	87	32	16	15	35	1.91
1338004--1338042	20	1.9	21	84	5	53	20	5	7	66	1.36
1339750--1339791	19	2.2	19	83	8	50	23	7	7	61	1.47
1344351--1344418	33	2.1	32	86	2	91	32	14	17	35	1.91
1344490--1344518	13	2.2	13	100	0	58	37	13	17	31	1.89
1344504--1344554	20	2.5	20	87	0	66	33	15	15	35	1.90
1345070--1345112	20	2.0	20	82	8	50	32	25	2	39	1.69
1351356--1351425	36	2.0	35	91	2	113	48	7	10	34	1.64
1352763--1352788	13	2.0	13	100	0	52	30	15	15	38	1.88
1352827--1352903	21	3.8	20	78	3	91	28	15	11	44	1.82
1352848--1352920	20	3.6	20	81	3	92	30	17	15	36	1.91
1352827--1352920	41	2.3	41	94	0	161	28	17	13	40	1.87
1353554--1353595	21	2.0	21	100	0	84	52	19	4	23	1.65
1355389--1355426	13	2.9	13	96	0	67	31	15	18	34	1.92
1357506--1357536	15	2.1	15	93	0	53	12	22	16	48	1.80
1361598--1361623	13	2.0	13	100	0	52	30	15	15	38	1.88
1361662--1361738	21	3.8	20	77	3	82	29	15	10	44	1.80
1361683--1361755	20	3.6	20	77	3	92	32	17	12	36	1.87
1361662--1361755	41	2.3	41	94	0	161	30	17	11	40	1.85
1364127--1364187	13	5.2	13	70	22	53	37	14	16	31	1.89
1364116--1364207	33	2.8	33	83	6	98	41	13	15	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1364231--1364301	32	2.2	32	89	0	115	35	18	12	33	1.89
1365028--1366241	49	24.8	49	79	7	1083	32	17	25	25	1.97
1365028--1366241	149	8.3	147	79	7	1148	32	17	25	25	1.97
1365436--1365787	87	3.9	87	81	8	326	30	18	23	26	1.98
1365564--1365641	39	2.0	39	92	0	129	24	23	25	26	2.00
1365602--1366246	101	6.5	100	83	4	745	33	17	25	24	1.96
1365602--1366241	150	4.3	148	80	3	687	33	17	25	24	1.96
1366310--1366386	29	2.7	29	81	16	106	22	16	33	27	1.95
1366258--1366386	56	2.3	56	84	9	156	19	16	33	31	1.94
1366480--1366675	34	6.0	34	84	8	262	37	11	31	18	1.87
1366423--1366696	61	4.4	61	79	15	271	35	12	32	20	1.90
1366392--1366696	95	3.2	95	91	2	499	35	13	31	20	1.90
1366740--1367244	30	16.3	31	78	14	440	37	14	26	21	1.92
1366706--1367244	63	8.6	64	78	13	511	37	14	26	21	1.92
1366742--1367244	93	5.4	93	88	6	661	36	14	26	22	1.92
1367045--1367152	52	2.0	56	87	12	163	37	11	30	21	1.88
1367960--1367984	13	1.9	13	100	0	50	44	16	8	32	1.76
1367973--1368086	19	6.6	19	74	22	108	33	13	16	36	1.87
1367992--1368092	32	3.2	32	97	0	184	32	12	16	37	1.87
1368011--1368067	13	3.9	13	74	24	51	33	15	15	35	1.90
1382520--1382584	33	2.0	33	84	6	87	20	12	12	55	1.68
1382577--1382648	32	2.2	34	78	14	89	29	19	8	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1382702--1382779	32	2.4	32	86	0	111	20	25	12	41	1.88
1387096--1387120	13	1.9	13	100	0	50	36	16	16	32	1.90
1387074--1387140	33	2.1	33	88	2	100	32	13	17	35	1.89
1387211--1387235	13	1.9	13	100	0	50	36	16	16	32	1.90

Tables:   1   2   3   4   5   6   7   8   9

The End!